HEADER SIGNALING PROTEIN 23-JAN-09 2KE5 TITLE SOLUTION STRUCTURE AND DYNAMICS OF THE SMALL GTPASE RALB IN ITS ACTIVE TITLE 2 CONFORMATION: SIGNIFICANCE FOR EFFECTOR PROTEIN BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAL-B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 12-185; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS RAL, CANCER, SIGNALLING, G PROTEIN, GTPASE, CELL MEMBRANE, GTP- KEYWDS 2 BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, KEYWDS 3 PRENYLATION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR R.FENWICK,S.PRASANNAN,L.J.CAMPBELL,D.NIETLISPACH,K.A.EVETTS, AUTHOR 2 J.CAMONIS,H.R.MOTT,D.OWEN REVDAT 3 10-NOV-21 2KE5 1 REMARK SEQADV REVDAT 2 03-NOV-09 2KE5 1 JRNL REVDAT 1 17-FEB-09 2KE5 0 JRNL AUTH R.B.FENWICK,S.PRASANNAN,L.J.CAMPBELL,D.NIETLISPACH, JRNL AUTH 2 K.A.EVETTS,J.CAMONIS,H.R.MOTT,D.OWEN JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE SMALL GTPASE RALB IN JRNL TITL 2 ITS ACTIVE CONFORMATION: SIGNIFICANCE FOR EFFECTOR PROTEIN JRNL TITL 3 BINDING JRNL REF BIOCHEMISTRY V. 48 2192 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19166349 JRNL DOI 10.1021/BI802129D REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA 2.7, CNS 1.1 REMARK 3 AUTHORS : BOUCHER (AZARA), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000101008. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 15N] RALB-1, 0.6 REMARK 210 MM PHOSPHOAMINOPHOSPHONIC ACID- REMARK 210 GUANYLATE ESTER-2, 1 MM REMARK 210 MAGNESIUM CHLORIDE-3, 50 MM REMARK 210 SODIUM PHOSPHATE-4, 100 MM REMARK 210 SODIUM CHLORIDE-5, 0.05 % SODIUM REMARK 210 AZIDE-6, 90% H2O/10% D2O; 0.6 MM REMARK 210 [U-99% 13C; U-99% 15N] RALB-7, REMARK 210 0.6 MM PHOSPHOAMINOPHOSPHONIC REMARK 210 ACID-GUANYLATE ESTER-8, 1 MM REMARK 210 MAGNESIUM CHLORIDE-9, 50 MM REMARK 210 SODIUM PHOSPHATE-10, 100 MM REMARK 210 SODIUM CHLORIDE-11, 0.05 % REMARK 210 SODIUM AZIDE-12, 90% H2O/10% D2O; REMARK 210 0.6 MM RALB-13, 0.6 MM REMARK 210 PHOSPHOAMINOPHOSPHONIC ACID- REMARK 210 GUANYLATE ESTER-14, 1 MM REMARK 210 MAGNESIUM CHLORIDE-15, 50 MM REMARK 210 SODIUM PHOSPHATE-16, 100 MM REMARK 210 SODIUM CHLORIDE-17, 0.05 % REMARK 210 SODIUM AZIDE-18, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS 1, ARIA 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 25 -72.32 -109.23 REMARK 500 1 ASP A 42 -31.53 -144.41 REMARK 500 1 TYR A 43 107.97 62.76 REMARK 500 1 LYS A 47 -37.55 -157.57 REMARK 500 1 ALA A 48 -17.22 -164.51 REMARK 500 1 ALA A 70 -163.72 -72.97 REMARK 500 1 ALA A 77 -6.21 -140.11 REMARK 500 1 ASN A 128 -162.23 -78.97 REMARK 500 1 LYS A 129 12.23 58.46 REMARK 500 1 LEU A 132 78.33 -118.96 REMARK 500 1 GLU A 183 18.77 58.09 REMARK 500 1 ASN A 184 -70.74 -126.12 REMARK 500 2 MET A 19 98.09 -67.95 REMARK 500 2 SER A 22 -85.33 61.60 REMARK 500 2 LEU A 72 34.60 -91.79 REMARK 500 2 TYR A 75 170.24 65.16 REMARK 500 2 ALA A 77 26.25 -172.68 REMARK 500 2 LYS A 115 32.06 -87.30 REMARK 500 2 LYS A 129 16.31 57.76 REMARK 500 2 ARG A 162 40.61 34.06 REMARK 500 2 GLU A 183 178.55 61.31 REMARK 500 2 ASN A 184 -72.04 -66.69 REMARK 500 3 SER A 22 -83.71 62.11 REMARK 500 3 VAL A 25 -69.77 -93.39 REMARK 500 3 LYS A 47 -62.44 -134.55 REMARK 500 3 ALA A 48 1.64 -172.41 REMARK 500 3 ALA A 77 17.95 -169.40 REMARK 500 3 LYS A 129 19.78 54.47 REMARK 500 3 LEU A 132 79.52 -118.94 REMARK 500 3 ARG A 162 41.69 34.51 REMARK 500 3 GLU A 183 -178.84 60.99 REMARK 500 3 ASN A 184 -75.02 -147.39 REMARK 500 4 LYS A 47 -39.16 -135.69 REMARK 500 4 ALA A 48 4.02 -168.45 REMARK 500 4 GLU A 73 -86.73 59.26 REMARK 500 4 ASP A 74 125.38 -171.92 REMARK 500 4 ALA A 77 25.12 -173.70 REMARK 500 4 ASP A 119 -67.50 -106.84 REMARK 500 4 LEU A 132 78.69 -105.53 REMARK 500 4 ARG A 136 107.99 -59.72 REMARK 500 4 ARG A 162 39.29 35.89 REMARK 500 4 GLU A 183 97.81 59.67 REMARK 500 5 VAL A 25 -71.38 -73.40 REMARK 500 5 ALA A 70 -174.12 58.22 REMARK 500 5 GLU A 73 -90.06 60.45 REMARK 500 5 ALA A 77 22.52 -173.72 REMARK 500 5 LYS A 115 57.15 -118.82 REMARK 500 5 GLU A 118 99.40 54.76 REMARK 500 5 ASP A 119 -43.25 -138.11 REMARK 500 5 ARG A 162 40.44 34.96 REMARK 500 REMARK 500 THIS ENTRY HAS 502 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 28 OG REMARK 620 2 GNP A 500 O2G 170.2 REMARK 620 3 GNP A 500 O2B 81.9 88.8 REMARK 620 4 HOH A 502 O 86.7 90.0 90.1 REMARK 620 5 HOH A 503 O 93.2 90.1 89.9 179.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15230 RELATED DB: BMRB REMARK 900 1H, 13C AND 15N RESONANCE ASSIGNMENTS FOR THE SMALL GTPASE RALB IN REMARK 900 ITS ACTIVE CONFORMATION DBREF 2KE5 A 12 185 UNP P11234 RALB_HUMAN 12 185 SEQADV 2KE5 LEU A 72 UNP P11234 GLN 72 ENGINEERED MUTATION SEQRES 1 A 174 LEU ALA LEU HIS LYS VAL ILE MET VAL GLY SER GLY GLY SEQRES 2 A 174 VAL GLY LYS SER ALA LEU THR LEU GLN PHE MET TYR ASP SEQRES 3 A 174 GLU PHE VAL GLU ASP TYR GLU PRO THR LYS ALA ASP SER SEQRES 4 A 174 TYR ARG LYS LYS VAL VAL LEU ASP GLY GLU GLU VAL GLN SEQRES 5 A 174 ILE ASP ILE LEU ASP THR ALA GLY LEU GLU ASP TYR ALA SEQRES 6 A 174 ALA ILE ARG ASP ASN TYR PHE ARG SER GLY GLU GLY PHE SEQRES 7 A 174 LEU LEU VAL PHE SER ILE THR GLU HIS GLU SER PHE THR SEQRES 8 A 174 ALA THR ALA GLU PHE ARG GLU GLN ILE LEU ARG VAL LYS SEQRES 9 A 174 ALA GLU GLU ASP LYS ILE PRO LEU LEU VAL VAL GLY ASN SEQRES 10 A 174 LYS SER ASP LEU GLU GLU ARG ARG GLN VAL PRO VAL GLU SEQRES 11 A 174 GLU ALA ARG SER LYS ALA GLU GLU TRP GLY VAL GLN TYR SEQRES 12 A 174 VAL GLU THR SER ALA LYS THR ARG ALA ASN VAL ASP LYS SEQRES 13 A 174 VAL PHE PHE ASP LEU MET ARG GLU ILE ARG THR LYS LYS SEQRES 14 A 174 MET SER GLU ASN LYS HET GNP A 500 45 HET MG A 501 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *2(H2 O) HELIX 1 1 GLY A 26 ASP A 37 1 12 HELIX 2 2 ALA A 77 SER A 85 1 9 HELIX 3 3 GLU A 97 LYS A 115 1 19 HELIX 4 4 PRO A 139 GLU A 149 1 11 HELIX 5 5 ASN A 164 LYS A 180 1 17 SHEET 1 A 6 TYR A 51 VAL A 56 0 SHEET 2 A 6 GLU A 61 ASP A 68 -1 O ILE A 66 N TYR A 51 SHEET 3 A 6 LEU A 14 GLY A 21 1 N HIS A 15 O ASP A 65 SHEET 4 A 6 GLY A 88 SER A 94 1 O LEU A 90 N ILE A 18 SHEET 5 A 6 LEU A 123 ASN A 128 1 O ASN A 128 N PHE A 93 SHEET 6 A 6 TYR A 154 GLU A 156 1 O VAL A 155 N GLY A 127 LINK OG SER A 28 MG MG A 501 1555 1555 2.46 LINK O2G GNP A 500 MG MG A 501 1555 1555 2.30 LINK O2B GNP A 500 MG MG A 501 1555 1555 2.29 LINK MG MG A 501 O HOH A 502 1555 1555 2.30 LINK MG MG A 501 O HOH A 503 1555 1555 2.30 SITE 1 AC1 15 GLY A 23 GLY A 24 VAL A 25 GLY A 26 SITE 2 AC1 15 LYS A 27 SER A 28 LEU A 30 PHE A 39 SITE 3 AC1 15 TYR A 43 ALA A 70 GLY A 127 ASN A 128 SITE 4 AC1 15 LYS A 129 ASP A 131 LYS A 160 SITE 1 AC2 2 LYS A 27 SER A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1