data_2KE8 # _entry.id 2KE8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KE8 pdb_00002ke8 10.2210/pdb2ke8/pdb RCSB RCSB101011 ? ? WWPDB D_1000101011 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KE8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-01-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 15860 BMRB 'NMR data related to NMR solutions structure of modified DNA containing imidazole nucleosides at acidic, neutral and basic pH' unspecified 2K67 PDB 'NMR solutions structure of modified DNA containing imidazole nucleosides at acidic pH' unspecified 2K68 PDB 'NMR solutions structure of modified DNA containing imidazole nucleosides at neutral pH' unspecified 2K69 PDB 'NMR solutions structure of modified DNA containing imidazole nucleosides at basic pH' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Johannsen, S.' 1 'Duepre, N.' 2 'Boehme, D.' 3 'Mueller, J.' 4 'Sigel, R.K.O.' 5 # _citation.id primary _citation.title 'Solution structure of a DNA double helix with consecutive metal-mediated base pairs.' _citation.journal_abbrev Nat.Chem. _citation.journal_volume 2 _citation.page_first 229 _citation.page_last 234 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1755-4330 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21124482 _citation.pdbx_database_id_DOI 10.1038/nchem.512 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Johannsen, S.' 1 ? primary 'Megger, N.' 2 ? primary 'Bohme, D.' 3 ? primary 'Sigel, R.K.' 4 ? primary 'Muller, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*AP*AP*TP*TP*TP*(D33)P*(D33)P*(D33)P*AP*AP*AP*TP*TP*AP*A)-3') ; 5015.311 2 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DA)(DA)(DT)(DT)(DT)(D33)(D33)(D33)(DA)(DA)(DA)(DT)(DT)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTAATTTNNNAAATTAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SILVER ION' _pdbx_entity_nonpoly.comp_id AG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 D33 n 1 9 D33 n 1 10 D33 n 1 11 DA n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 D33 'DNA linking' . '1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-imidazole' ? 'C8 H13 N2 O6 P' 264.172 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 D33 8 8 8 D33 D33 A . n A 1 9 D33 9 9 9 D33 D33 A . n A 1 10 D33 10 10 10 D33 D33 A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DA 13 13 13 DA DA A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DA 16 16 16 DA DA A . n A 1 17 DA 17 17 17 DA DA A . n B 1 1 DT 1 18 18 DT DT B . n B 1 2 DT 2 19 19 DT DT B . n B 1 3 DA 3 20 20 DA DA B . n B 1 4 DA 4 21 21 DA DA B . n B 1 5 DT 5 22 22 DT DT B . n B 1 6 DT 6 23 23 DT DT B . n B 1 7 DT 7 24 24 DT DT B . n B 1 8 D33 8 25 25 D33 D33 B . n B 1 9 D33 9 26 26 D33 D33 B . n B 1 10 D33 10 27 27 D33 D33 B . n B 1 11 DA 11 28 28 DA DA B . n B 1 12 DA 12 29 29 DA DA B . n B 1 13 DA 13 30 30 DA DA B . n B 1 14 DT 14 31 31 DT DT B . n B 1 15 DT 15 32 32 DT DT B . n B 1 16 DA 16 33 33 DA DA B . n B 1 17 DA 17 34 34 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 35 35 AG AG A . D 2 AG 1 36 36 AG AG A . E 2 AG 1 37 37 AG AG A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KE8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KE8 _struct.title 'NMR solution structure of metal-modified DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KE8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, artificial nucleobase, imidazole nucleoside, Ag+' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KE8 _struct_ref.pdbx_db_accession 2KE8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code TTAATTTXXXAAATTAA _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KE8 A 1 ? 17 ? 2KE8 1 ? 17 ? 1 17 2 1 2KE8 B 1 ? 17 ? 2KE8 18 ? 34 ? 18 34 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 7 "O3'" ? ? ? 1_555 A D33 8 P ? ? A DT 7 A D33 8 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A D33 8 "O3'" ? ? ? 1_555 A D33 9 P ? ? A D33 8 A D33 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? A D33 9 "O3'" ? ? ? 1_555 A D33 10 P ? ? A D33 9 A D33 10 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? A D33 10 "O3'" ? ? ? 1_555 A DA 11 P ? ? A D33 10 A DA 11 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale5 covale both ? B DT 7 "O3'" ? ? ? 1_555 B D33 8 P ? ? B DT 24 B D33 25 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale both ? B D33 8 "O3'" ? ? ? 1_555 B D33 9 P ? ? B D33 25 B D33 26 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale7 covale both ? B D33 9 "O3'" ? ? ? 1_555 B D33 10 P ? ? B D33 26 B D33 27 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale both ? B D33 10 "O3'" ? ? ? 1_555 B DA 11 P ? ? B D33 27 B DA 28 1_555 ? ? ? ? ? ? ? 1.616 ? ? metalc1 metalc ? ? A D33 8 N3 ? ? ? 1_555 C AG . AG ? ? A D33 8 A AG 35 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc2 metalc ? ? A D33 9 N3 ? ? ? 1_555 D AG . AG ? ? A D33 9 A AG 36 1_555 ? ? ? ? ? ? ? 2.119 ? ? metalc3 metalc ? ? A D33 10 N3 ? ? ? 1_555 E AG . AG ? ? A D33 10 A AG 37 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc4 metalc ? ? C AG . AG ? ? ? 1_555 B D33 10 N3 ? ? A AG 35 B D33 27 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc5 metalc ? ? D AG . AG ? ? ? 1_555 B D33 9 N3 ? ? A AG 36 B D33 26 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc6 metalc ? ? E AG . AG ? ? ? 1_555 B D33 8 N3 ? ? A AG 37 B D33 25 1_555 ? ? ? ? ? ? ? 2.124 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 17 N1 ? ? A DT 1 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 17 N6 ? ? A DT 1 B DA 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 16 N1 ? ? A DT 2 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 16 N6 ? ? A DT 2 B DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 15 N3 ? ? A DA 3 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 15 O4 ? ? A DA 3 B DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 14 N3 ? ? A DA 4 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 14 O4 ? ? A DA 4 B DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 13 N1 ? ? A DT 5 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 5 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 6 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 6 B DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 7 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 7 B DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 11 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 11 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 12 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 12 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 13 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 13 B DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 14 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 14 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 15 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 15 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 16 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 16 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 17 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 17 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A D33 8 ? A D33 8 ? 1_555 AG ? C AG . ? A AG 35 ? 1_555 N3 ? B D33 10 ? B D33 27 ? 1_555 177.6 ? 2 N3 ? A D33 9 ? A D33 9 ? 1_555 AG ? D AG . ? A AG 36 ? 1_555 N3 ? B D33 9 ? B D33 26 ? 1_555 179.1 ? 3 N3 ? A D33 10 ? A D33 10 ? 1_555 AG ? E AG . ? A AG 37 ? 1_555 N3 ? B D33 8 ? B D33 25 ? 1_555 177.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 35 ? 2 'BINDING SITE FOR RESIDUE AG A 35' AC2 Software A AG 36 ? 2 'BINDING SITE FOR RESIDUE AG A 36' AC3 Software A AG 37 ? 2 'BINDING SITE FOR RESIDUE AG A 37' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 D33 A 8 ? D33 A 8 . ? 1_555 ? 2 AC1 2 D33 B 10 ? D33 B 27 . ? 1_555 ? 3 AC2 2 D33 A 9 ? D33 A 9 . ? 1_555 ? 4 AC2 2 D33 B 9 ? D33 B 26 . ? 1_555 ? 5 AC3 2 D33 A 10 ? D33 A 10 . ? 1_555 ? 6 AC3 2 D33 B 8 ? D33 B 25 . ? 1_555 ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KE8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 1.06 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.34 _pdbx_nmr_ensemble_rms.entry_id 2KE8 _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KE8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.3-0.5 mM DNA (34-MER)-1, 120 mM sodium perchlorate-2, 0.9-1.5 mM SILVER ION-3, 100% D2O' 1 '100% D2O' '0.3-0.5 mM DNA (34-MER)-4, 120 mM sodium perchlorate-5, 0.9-1.5 mM SILVER ION-6, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'DNA (34-MER)-1' ? 0.3-0.5 mM ? 1 'sodium perchlorate-2' 120 ? mM ? 1 'SILVER ION-3' ? 0.9-1.5 mM ? 1 'DNA (34-MER)-4' ? 0.3-0.5 mM ? 2 'sodium perchlorate-5' 120 ? mM ? 2 'SILVER ION-6' ? 0.9-1.5 mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.12 7.2 ambient ? 298 K 2 0.12 7.2 ambient ? 278 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-13C HSQC' 1 4 1 '2D 1H-15N HSQC' 1 5 1 '1D 31P' 2 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KE8 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 848 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 366 _pdbx_nmr_constraints.NOE_long_range_total_count 15 _pdbx_nmr_constraints.NOE_medium_range_total_count 25 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 442 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2KE8 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' processing TopSpin '1.3, 2.0, 2.1' 1 Goddard 'chemical shift assignment' Sparky 3.1 2 Goddard 'data analysis' Sparky 3.1 3 Goddard 'peak picking' Sparky 3.1 4 'Guntert, Braun and Wuthrich' 'structure solution' DYANA 1.5 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.15 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.15 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 D33 C4 C Y N 2 D33 C5 C Y N 3 D33 C2 C Y N 4 D33 N1 N Y N 5 D33 P P N N 6 D33 OP1 O N N 7 D33 OP2 O N N 8 D33 "O5'" O N N 9 D33 "C5'" C N N 10 D33 "C4'" C N R 11 D33 "O4'" O N N 12 D33 "C1'" C N R 13 D33 N3 N Y N 14 D33 "C2'" C N N 15 D33 "C3'" C N S 16 D33 "O3'" O N N 17 D33 "H15'" H N N 18 D33 "H25'" H N N 19 D33 "H4'" H N N 20 D33 "H1'" H N N 21 D33 H55 H N N 22 D33 H22 H N N 23 D33 H44 H N N 24 D33 "H22'" H N N 25 D33 "H12'" H N N 26 D33 "H3'" H N N 27 D33 HOP2 H N N 28 D33 "HO3'" H N N 29 D33 OP3 O N N 30 D33 HOP3 H N N 31 DA OP3 O N N 32 DA P P N N 33 DA OP1 O N N 34 DA OP2 O N N 35 DA "O5'" O N N 36 DA "C5'" C N N 37 DA "C4'" C N R 38 DA "O4'" O N N 39 DA "C3'" C N S 40 DA "O3'" O N N 41 DA "C2'" C N N 42 DA "C1'" C N R 43 DA N9 N Y N 44 DA C8 C Y N 45 DA N7 N Y N 46 DA C5 C Y N 47 DA C6 C Y N 48 DA N6 N N N 49 DA N1 N Y N 50 DA C2 C Y N 51 DA N3 N Y N 52 DA C4 C Y N 53 DA HOP3 H N N 54 DA HOP2 H N N 55 DA "H5'" H N N 56 DA "H5''" H N N 57 DA "H4'" H N N 58 DA "H3'" H N N 59 DA "HO3'" H N N 60 DA "H2'" H N N 61 DA "H2''" H N N 62 DA "H1'" H N N 63 DA H8 H N N 64 DA H61 H N N 65 DA H62 H N N 66 DA H2 H N N 67 DT OP3 O N N 68 DT P P N N 69 DT OP1 O N N 70 DT OP2 O N N 71 DT "O5'" O N N 72 DT "C5'" C N N 73 DT "C4'" C N R 74 DT "O4'" O N N 75 DT "C3'" C N S 76 DT "O3'" O N N 77 DT "C2'" C N N 78 DT "C1'" C N R 79 DT N1 N N N 80 DT C2 C N N 81 DT O2 O N N 82 DT N3 N N N 83 DT C4 C N N 84 DT O4 O N N 85 DT C5 C N N 86 DT C7 C N N 87 DT C6 C N N 88 DT HOP3 H N N 89 DT HOP2 H N N 90 DT "H5'" H N N 91 DT "H5''" H N N 92 DT "H4'" H N N 93 DT "H3'" H N N 94 DT "HO3'" H N N 95 DT "H2'" H N N 96 DT "H2''" H N N 97 DT "H1'" H N N 98 DT H3 H N N 99 DT H71 H N N 100 DT H72 H N N 101 DT H73 H N N 102 DT H6 H N N 103 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D33 C4 H44 sing N N 1 D33 C5 C4 doub Y N 2 D33 C2 N3 doub Y N 3 D33 N1 C5 sing Y N 4 D33 N1 C2 sing Y N 5 D33 P "O5'" sing N N 6 D33 P OP2 sing N N 7 D33 OP1 P doub N N 8 D33 OP2 HOP2 sing N N 9 D33 "C5'" "O5'" sing N N 10 D33 "C5'" "C4'" sing N N 11 D33 "C5'" "H25'" sing N N 12 D33 "C4'" "O4'" sing N N 13 D33 "C4'" "C3'" sing N N 14 D33 "O4'" "C1'" sing N N 15 D33 "C1'" N1 sing N N 16 D33 "C1'" "C2'" sing N N 17 D33 N3 C4 sing Y N 18 D33 "C2'" "H22'" sing N N 19 D33 "C2'" "H12'" sing N N 20 D33 "C3'" "C2'" sing N N 21 D33 "C3'" "H3'" sing N N 22 D33 "O3'" "C3'" sing N N 23 D33 "O3'" "HO3'" sing N N 24 D33 "H15'" "C5'" sing N N 25 D33 "H4'" "C4'" sing N N 26 D33 "H1'" "C1'" sing N N 27 D33 H55 C5 sing N N 28 D33 H22 C2 sing N N 29 D33 P OP3 sing N N 30 D33 OP3 HOP3 sing N N 31 DA OP3 P sing N N 32 DA OP3 HOP3 sing N N 33 DA P OP1 doub N N 34 DA P OP2 sing N N 35 DA P "O5'" sing N N 36 DA OP2 HOP2 sing N N 37 DA "O5'" "C5'" sing N N 38 DA "C5'" "C4'" sing N N 39 DA "C5'" "H5'" sing N N 40 DA "C5'" "H5''" sing N N 41 DA "C4'" "O4'" sing N N 42 DA "C4'" "C3'" sing N N 43 DA "C4'" "H4'" sing N N 44 DA "O4'" "C1'" sing N N 45 DA "C3'" "O3'" sing N N 46 DA "C3'" "C2'" sing N N 47 DA "C3'" "H3'" sing N N 48 DA "O3'" "HO3'" sing N N 49 DA "C2'" "C1'" sing N N 50 DA "C2'" "H2'" sing N N 51 DA "C2'" "H2''" sing N N 52 DA "C1'" N9 sing N N 53 DA "C1'" "H1'" sing N N 54 DA N9 C8 sing Y N 55 DA N9 C4 sing Y N 56 DA C8 N7 doub Y N 57 DA C8 H8 sing N N 58 DA N7 C5 sing Y N 59 DA C5 C6 sing Y N 60 DA C5 C4 doub Y N 61 DA C6 N6 sing N N 62 DA C6 N1 doub Y N 63 DA N6 H61 sing N N 64 DA N6 H62 sing N N 65 DA N1 C2 sing Y N 66 DA C2 N3 doub Y N 67 DA C2 H2 sing N N 68 DA N3 C4 sing Y N 69 DT OP3 P sing N N 70 DT OP3 HOP3 sing N N 71 DT P OP1 doub N N 72 DT P OP2 sing N N 73 DT P "O5'" sing N N 74 DT OP2 HOP2 sing N N 75 DT "O5'" "C5'" sing N N 76 DT "C5'" "C4'" sing N N 77 DT "C5'" "H5'" sing N N 78 DT "C5'" "H5''" sing N N 79 DT "C4'" "O4'" sing N N 80 DT "C4'" "C3'" sing N N 81 DT "C4'" "H4'" sing N N 82 DT "O4'" "C1'" sing N N 83 DT "C3'" "O3'" sing N N 84 DT "C3'" "C2'" sing N N 85 DT "C3'" "H3'" sing N N 86 DT "O3'" "HO3'" sing N N 87 DT "C2'" "C1'" sing N N 88 DT "C2'" "H2'" sing N N 89 DT "C2'" "H2''" sing N N 90 DT "C1'" N1 sing N N 91 DT "C1'" "H1'" sing N N 92 DT N1 C2 sing N N 93 DT N1 C6 sing N N 94 DT C2 O2 doub N N 95 DT C2 N3 sing N N 96 DT N3 C4 sing N N 97 DT N3 H3 sing N N 98 DT C4 O4 doub N N 99 DT C4 C5 sing N N 100 DT C5 C7 sing N N 101 DT C5 C6 doub N N 102 DT C7 H71 sing N N 103 DT C7 H72 sing N N 104 DT C7 H73 sing N N 105 DT C6 H6 sing N N 106 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KE8 'b-form double helix' 2KE8 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 17 1_555 -0.389 -0.084 0.088 -2.527 -7.755 2.110 1 A_DT1:DA34_B A 1 ? B 34 ? 20 1 1 A DT 2 1_555 B DA 16 1_555 -0.125 -0.212 -0.274 -1.107 -17.275 4.022 2 A_DT2:DA33_B A 2 ? B 33 ? 20 1 1 A DA 3 1_555 B DT 15 1_555 0.126 -0.209 0.178 -2.918 -11.114 -1.153 3 A_DA3:DT32_B A 3 ? B 32 ? 20 1 1 A DA 4 1_555 B DT 14 1_555 0.138 -0.140 -0.144 -4.120 -11.599 0.817 4 A_DA4:DT31_B A 4 ? B 31 ? 20 1 1 A DT 5 1_555 B DA 13 1_555 -0.545 -0.169 -0.022 -3.736 -7.230 -2.846 5 A_DT5:DA30_B A 5 ? B 30 ? 20 1 1 A DT 6 1_555 B DA 12 1_555 -0.428 -0.221 -0.030 -2.378 -12.735 -2.585 6 A_DT6:DA29_B A 6 ? B 29 ? 20 1 1 A DT 7 1_555 B DA 11 1_555 -0.376 -0.085 -0.119 -2.027 -11.301 -1.476 7 A_DT7:DA28_B A 7 ? B 28 ? 20 1 1 A DA 11 1_555 B DT 7 1_555 0.342 -0.087 -0.164 1.545 -11.046 -1.206 8 A_DA11:DT24_B A 11 ? B 24 ? 20 1 1 A DA 12 1_555 B DT 6 1_555 0.447 -0.207 -0.097 1.063 -11.729 -2.458 9 A_DA12:DT23_B A 12 ? B 23 ? 20 1 1 A DA 13 1_555 B DT 5 1_555 0.546 -0.147 -0.049 3.836 -7.247 -2.523 10 A_DA13:DT22_B A 13 ? B 22 ? 20 1 1 A DT 14 1_555 B DA 4 1_555 -0.169 -0.126 -0.169 3.978 -11.110 0.791 11 A_DT14:DA21_B A 14 ? B 21 ? 20 1 1 A DT 15 1_555 B DA 3 1_555 -0.126 -0.208 0.182 2.172 -10.524 -1.088 12 A_DT15:DA20_B A 15 ? B 20 ? 20 1 1 A DA 16 1_555 B DT 2 1_555 0.115 -0.226 -0.263 1.382 -17.296 3.709 13 A_DA16:DT19_B A 16 ? B 19 ? 20 1 1 A DA 17 1_555 B DT 1 1_555 0.411 -0.094 0.108 1.691 -6.810 2.083 14 A_DA17:DT18_B A 17 ? B 18 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 17 1_555 A DT 2 1_555 B DA 16 1_555 -0.126 -0.044 3.500 1.579 -5.351 36.226 0.716 0.432 3.463 -8.543 -2.520 36.639 1 AA_DT1DT2:DA33DA34_BB A 1 ? B 34 ? A 2 ? B 33 ? 1 A DT 2 1_555 B DA 16 1_555 A DA 3 1_555 B DT 15 1_555 -0.095 -0.519 3.423 -6.419 -3.038 36.057 -0.386 -0.774 3.420 -4.850 10.248 36.727 2 AA_DT2DA3:DT32DA33_BB A 2 ? B 33 ? A 3 ? B 32 ? 1 A DA 3 1_555 B DT 15 1_555 A DA 4 1_555 B DT 14 1_555 -0.072 -0.351 3.261 2.919 -0.047 35.636 -0.565 0.536 3.245 -0.077 -4.759 35.751 3 AA_DA3DA4:DT31DT32_BB A 3 ? B 32 ? A 4 ? B 31 ? 1 A DA 4 1_555 B DT 14 1_555 A DT 5 1_555 B DA 13 1_555 0.040 -0.698 3.233 -1.555 3.640 34.298 -1.727 -0.302 3.139 6.147 2.626 34.519 4 AA_DA4DT5:DA30DT31_BB A 4 ? B 31 ? A 5 ? B 30 ? 1 A DT 5 1_555 B DA 13 1_555 A DT 6 1_555 B DA 12 1_555 -0.155 -0.113 3.341 0.023 3.526 35.371 -0.711 0.257 3.315 5.785 -0.037 35.540 5 AA_DT5DT6:DA29DA30_BB A 5 ? B 30 ? A 6 ? B 29 ? 1 A DT 6 1_555 B DA 12 1_555 A DT 7 1_555 B DA 11 1_555 -0.271 -0.394 3.321 0.338 8.000 32.674 -1.992 0.524 3.136 13.961 -0.591 33.615 6 AA_DT6DT7:DA28DA29_BB A 6 ? B 29 ? A 7 ? B 28 ? 1 A DA 11 1_555 B DT 7 1_555 A DA 12 1_555 B DT 6 1_555 0.269 -0.377 3.341 -0.465 8.374 32.799 -2.012 -0.537 3.148 14.536 0.807 33.826 7 AA_DA11DA12:DT23DT24_BB A 11 ? B 24 ? A 12 ? B 23 ? 1 A DA 12 1_555 B DT 6 1_555 A DA 13 1_555 B DT 5 1_555 0.153 -0.104 3.287 -0.257 3.286 35.276 -0.655 -0.289 3.263 5.408 0.423 35.425 8 AA_DA12DA13:DT22DT23_BB A 12 ? B 23 ? A 13 ? B 22 ? 1 A DA 13 1_555 B DT 5 1_555 A DT 14 1_555 B DA 4 1_555 -0.049 -0.683 3.261 1.854 3.511 34.176 -1.694 0.369 3.170 5.949 -3.142 34.399 9 AA_DA13DT14:DA21DT22_BB A 13 ? B 22 ? A 14 ? B 21 ? 1 A DT 14 1_555 B DA 4 1_555 A DT 15 1_555 B DA 3 1_555 0.085 -0.351 3.265 -3.107 0.675 35.731 -0.665 -0.581 3.239 1.097 5.051 35.867 10 AA_DT14DT15:DA20DA21_BB A 14 ? B 21 ? A 15 ? B 20 ? 1 A DT 15 1_555 B DA 3 1_555 A DA 16 1_555 B DT 2 1_555 0.057 -0.524 3.395 6.145 -3.198 35.965 -0.374 0.794 3.391 -5.120 -9.840 36.604 11 AA_DT15DA16:DT19DA20_BB A 15 ? B 20 ? A 16 ? B 19 ? 1 A DA 16 1_555 B DT 2 1_555 A DA 17 1_555 B DT 1 1_555 0.136 -0.056 3.520 -2.031 -5.281 36.444 0.681 -0.511 3.481 -8.382 3.223 36.866 12 AA_DA16DA17:DT18DT19_BB A 16 ? B 19 ? A 17 ? B 18 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 700 Bruker AVANCE 1 'Bruker Avance' 400 Bruker AV-2 2 'Bruker AV-2' # _atom_sites.entry_id 2KE8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol AG C H N O P # loop_