data_2KHE # _entry.id 2KHE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KHE pdb_00002khe 10.2210/pdb2khe/pdb RCSB RCSB101123 ? ? WWPDB D_1000101123 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001365.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KHE _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-04-03 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Kawazoe, M.' 2 'Kaminishi, T.' 3 'Takemoto, C.' 4 'Muto, Y.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Kawazoe, M.' 2 ? primary 'Kaminishi, T.' 3 ? primary 'Takemoto, C.' 4 ? primary 'Muto, Y.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Toxin-like protein' _entity.formula_weight 10745.428 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation R84A _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'toxin RelE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGYRIEFDPRAEKELEKLDREVARRILRFLRERVATLEDPRSLGEPLRGPELGRFWKYRVGDYRLICHIQDREATVLVLR VGHARDVYR ; _entity_poly.pdbx_seq_one_letter_code_can ;MGYRIEFDPRAEKELEKLDREVARRILRFLRERVATLEDPRSLGEPLRGPELGRFWKYRVGDYRLICHIQDREATVLVLR VGHARDVYR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001365.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 TYR n 1 4 ARG n 1 5 ILE n 1 6 GLU n 1 7 PHE n 1 8 ASP n 1 9 PRO n 1 10 ARG n 1 11 ALA n 1 12 GLU n 1 13 LYS n 1 14 GLU n 1 15 LEU n 1 16 GLU n 1 17 LYS n 1 18 LEU n 1 19 ASP n 1 20 ARG n 1 21 GLU n 1 22 VAL n 1 23 ALA n 1 24 ARG n 1 25 ARG n 1 26 ILE n 1 27 LEU n 1 28 ARG n 1 29 PHE n 1 30 LEU n 1 31 ARG n 1 32 GLU n 1 33 ARG n 1 34 VAL n 1 35 ALA n 1 36 THR n 1 37 LEU n 1 38 GLU n 1 39 ASP n 1 40 PRO n 1 41 ARG n 1 42 SER n 1 43 LEU n 1 44 GLY n 1 45 GLU n 1 46 PRO n 1 47 LEU n 1 48 ARG n 1 49 GLY n 1 50 PRO n 1 51 GLU n 1 52 LEU n 1 53 GLY n 1 54 ARG n 1 55 PHE n 1 56 TRP n 1 57 LYS n 1 58 TYR n 1 59 ARG n 1 60 VAL n 1 61 GLY n 1 62 ASP n 1 63 TYR n 1 64 ARG n 1 65 LEU n 1 66 ILE n 1 67 CYS n 1 68 HIS n 1 69 ILE n 1 70 GLN n 1 71 ASP n 1 72 ARG n 1 73 GLU n 1 74 ALA n 1 75 THR n 1 76 VAL n 1 77 LEU n 1 78 VAL n 1 79 LEU n 1 80 ARG n 1 81 VAL n 1 82 GLY n 1 83 HIS n 1 84 ALA n 1 85 ARG n 1 86 ASP n 1 87 VAL n 1 88 TYR n 1 89 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pET11a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SGM1_THET8 _struct_ref.pdbx_db_accession Q5SGM1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGYRIEFDPRAEKELEKLDREVARRILRFLRERVATLEDPRSLGEPLRGPELGRFWKYRVGDYRLICHIQDREATVLVLR VGHRRDVYR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KHE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SGM1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 89 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2KHE _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 84 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5SGM1 _struct_ref_seq_dif.db_mon_id ARG _struct_ref_seq_dif.pdbx_seq_db_seq_num 84 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 84 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.4mM [U-100% 13C; U-100% 15N] protein-1, 20mM [U-2H] d-Tris-HCl-2, 100mM sodium chloride-3, 5mM [U-2H] d-DTT-4, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KHE _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KHE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KHE _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR 3.5 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 20060702 2 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 3 'Kobayashi, N.' 'data analysis' KUJIRA 0.9820 4 'Yokochi, M' collection NMRPipe 20060702 5 'Yokochi, M' 'data analysis' NMRPipe 20060702 6 'Yokochi, M' 'chemical shift assignment' NMRPipe 20060702 7 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.0.17 8 Goddard collection Sparky ? 9 Goddard 'data analysis' Sparky ? 10 Goddard 'chemical shift assignment' Sparky ? 11 Goddard 'structure solution' Sparky ? 12 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.0.17 13 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KHE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KHE _struct.title 'Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KHE _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;RelE, toxin-antitoxin, RNase, Plasmid, HYDROLASE, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 10 ? LYS A 17 ? ARG A 10 LYS A 17 1 ? 8 HELX_P HELX_P2 2 ASP A 19 ? LEU A 37 ? ASP A 19 LEU A 37 1 ? 19 HELX_P HELX_P3 3 ASP A 71 ? GLU A 73 ? ASP A 71 GLU A 73 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? PHE A 7 ? ARG A 4 PHE A 7 A 2 THR A 75 ? HIS A 83 ? THR A 75 HIS A 83 A 3 TYR A 63 ? GLN A 70 ? TYR A 63 GLN A 70 A 4 TRP A 56 ? VAL A 60 ? TRP A 56 VAL A 60 A 5 GLY A 44 ? PRO A 46 ? GLY A 44 PRO A 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 6 ? N GLU A 6 O VAL A 76 ? O VAL A 76 A 2 3 O LEU A 79 ? O LEU A 79 N ILE A 66 ? N ILE A 66 A 3 4 O LEU A 65 ? O LEU A 65 N TYR A 58 ? N TYR A 58 A 4 5 O LYS A 57 ? O LYS A 57 N GLU A 45 ? N GLU A 45 # _atom_sites.entry_id 2KHE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 TYR 88 88 88 TYR TYR A . n A 1 89 ARG 89 89 89 ARG ARG A . n # _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center RSGI _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 0.4 ? mM '[U-100% 13C; U-100% 15N]' 1 d-Tris-HCl-2 20 ? mM '[U-2H]' 1 'sodium chloride-3' 100 ? mM ? 1 d-DTT-4 5 ? mM '[U-2H]' 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 33 ? ? -68.81 -72.34 2 1 LEU A 47 ? ? -57.67 171.43 3 1 ARG A 54 ? ? -61.23 77.32 4 1 ALA A 74 ? ? 34.17 53.60 5 2 LEU A 18 ? ? -59.04 170.61 6 2 ARG A 33 ? ? -64.37 -70.91 7 2 ARG A 41 ? ? -100.25 44.35 8 2 GLU A 51 ? ? -75.81 -71.25 9 2 LEU A 52 ? ? -45.40 156.25 10 2 ASP A 86 ? ? -71.28 -74.80 11 3 LEU A 18 ? ? -58.48 172.75 12 3 GLU A 32 ? ? -115.43 -73.10 13 3 ARG A 33 ? ? -56.54 -72.21 14 3 LEU A 47 ? ? -82.75 43.57 15 3 ARG A 48 ? ? -52.18 105.45 16 3 ALA A 84 ? ? -35.90 -70.24 17 3 ASP A 86 ? ? -50.43 -70.72 18 3 TYR A 88 ? ? -38.20 155.16 19 4 LEU A 18 ? ? -53.98 172.09 20 4 ARG A 33 ? ? -61.92 -72.21 21 4 LEU A 37 ? ? -51.95 106.16 22 4 ARG A 41 ? ? -92.56 45.55 23 4 ASP A 86 ? ? -93.06 -74.83 24 5 LEU A 18 ? ? -47.69 174.25 25 5 ARG A 33 ? ? -64.73 -72.22 26 5 GLU A 38 ? ? -38.27 -39.65 27 5 ALA A 74 ? ? 35.87 42.86 28 5 VAL A 87 ? ? -34.13 -73.84 29 6 ARG A 33 ? ? -72.88 -71.14 30 6 ARG A 85 ? ? -39.05 -34.41 31 6 ASP A 86 ? ? -76.68 -71.93 32 6 TYR A 88 ? ? -44.40 157.39 33 7 LEU A 18 ? ? -52.92 173.90 34 7 ARG A 33 ? ? -61.31 -71.34 35 7 ARG A 41 ? ? -102.94 47.35 36 7 ALA A 74 ? ? 37.29 40.45 37 7 HIS A 83 ? ? -47.10 159.70 38 7 ALA A 84 ? ? -82.54 37.82 39 7 ARG A 85 ? ? -124.76 -61.35 40 8 GLU A 12 ? ? -35.90 -37.57 41 8 LEU A 18 ? ? -56.06 171.88 42 8 GLU A 32 ? ? -106.72 -60.97 43 8 ARG A 33 ? ? -67.07 -72.67 44 8 LEU A 37 ? ? -35.76 121.68 45 8 ARG A 41 ? ? -92.08 46.24 46 8 LEU A 43 ? ? -100.14 -71.12 47 8 ALA A 74 ? ? 38.79 53.01 48 9 ARG A 33 ? ? -62.56 -71.16 49 9 LEU A 37 ? ? -36.62 122.50 50 9 ARG A 41 ? ? -89.73 46.59 51 9 LEU A 43 ? ? -99.47 33.02 52 9 LEU A 52 ? ? -77.97 -75.01 53 9 ALA A 74 ? ? 36.93 52.78 54 10 LEU A 18 ? ? -49.96 175.47 55 10 ARG A 33 ? ? -62.46 -70.86 56 10 LEU A 37 ? ? -51.32 106.47 57 10 GLU A 38 ? ? -38.37 -37.37 58 10 ARG A 41 ? ? -100.52 51.80 59 10 ARG A 54 ? ? -102.89 65.87 60 10 ALA A 74 ? ? 34.56 52.09 61 10 TYR A 88 ? ? -35.97 146.81 62 11 GLU A 32 ? ? -114.56 -74.18 63 11 PRO A 40 ? ? -69.79 3.36 64 11 ARG A 41 ? ? -107.14 44.50 65 11 LEU A 47 ? ? -66.06 93.80 66 11 ARG A 54 ? ? -100.37 40.87 67 12 LEU A 18 ? ? -57.48 177.04 68 12 GLU A 32 ? ? -116.04 -70.89 69 12 ARG A 33 ? ? -57.17 -71.53 70 12 ARG A 41 ? ? -85.73 40.25 71 12 LEU A 52 ? ? -118.40 -70.18 72 12 ALA A 74 ? ? 37.49 53.33 73 12 VAL A 87 ? ? -35.17 -32.03 74 13 LEU A 18 ? ? -51.79 178.76 75 13 ARG A 20 ? ? -35.47 -38.36 76 13 GLU A 32 ? ? -108.66 -72.75 77 13 ARG A 33 ? ? -54.17 -73.09 78 13 ARG A 41 ? ? -83.39 37.31 79 13 ALA A 84 ? ? -34.78 -33.55 80 13 VAL A 87 ? ? -37.26 124.98 81 14 LEU A 18 ? ? -54.95 171.80 82 14 ARG A 41 ? ? -90.95 41.49 83 14 PRO A 46 ? ? -69.81 -168.46 84 14 HIS A 83 ? ? -49.39 163.42 85 15 ASP A 8 ? ? -47.72 158.57 86 15 ARG A 33 ? ? -68.18 -71.15 87 15 LEU A 37 ? ? -35.03 103.78 88 15 GLU A 38 ? ? -37.95 -30.99 89 15 ARG A 41 ? ? -86.01 35.78 90 15 ARG A 54 ? ? -98.15 39.39 91 15 LEU A 79 ? ? -130.95 -50.92 92 15 ALA A 84 ? ? -42.28 -70.48 93 15 ASP A 86 ? ? -76.14 -70.96 94 16 LEU A 18 ? ? -52.43 172.09 95 16 GLU A 32 ? ? -110.16 -70.71 96 16 ARG A 33 ? ? -53.18 -73.25 97 16 GLU A 38 ? ? -36.87 -37.33 98 16 GLU A 51 ? ? -91.94 -61.28 99 16 LEU A 52 ? ? -35.17 141.79 100 16 ALA A 74 ? ? 37.76 46.37 101 16 HIS A 83 ? ? -49.62 159.05 102 17 ASP A 19 ? ? -48.07 160.88 103 17 GLU A 32 ? ? -115.60 -70.45 104 17 ARG A 33 ? ? -56.90 -72.99 105 17 ARG A 41 ? ? -85.05 39.44 106 17 PHE A 55 ? ? -43.30 159.85 107 17 HIS A 83 ? ? -46.94 160.69 108 18 LEU A 18 ? ? -58.74 173.52 109 18 GLU A 32 ? ? -111.05 -73.24 110 18 ARG A 33 ? ? -54.38 -73.54 111 18 PHE A 55 ? ? -37.11 138.97 112 18 ALA A 74 ? ? 39.40 50.78 113 18 TYR A 88 ? ? -37.27 116.45 114 19 LEU A 18 ? ? -58.54 178.70 115 19 GLU A 32 ? ? -117.94 -74.40 116 19 ARG A 33 ? ? -51.57 -72.45 117 19 ARG A 41 ? ? -93.46 37.53 118 19 GLU A 51 ? ? -95.04 43.73 119 19 ALA A 74 ? ? 39.96 48.78 120 19 HIS A 83 ? ? -48.91 156.49 121 20 ASP A 8 ? ? -47.36 158.71 122 20 GLU A 32 ? ? -118.99 -74.99 123 20 GLU A 51 ? ? -171.46 112.37 124 20 ALA A 74 ? ? 34.36 50.55 125 20 LEU A 79 ? ? -130.47 -44.16 #