data_2KHQ # _entry.id 2KHQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KHQ pdb_00002khq 10.2210/pdb2khq/pdb RCSB RCSB101135 ? ? WWPDB D_1000101135 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id SyR103B _pdbx_database_related.db_name TargetDB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KHQ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-04-10 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eletsky, A.' 1 'Mills, J.L.' 2 'Hua, J.' 3 'Belote, R.L.' 4 'Ciccosanti, C.' 5 'Jiang, M.' 6 'Nair, R.' 7 'Rost, B.' 8 'Acton, T.B.' 9 'Xiao, R.' 10 'Swapna, G.V.T.' 11 'Everett, J.K.' 12 'Montelione, G.T.' 13 'Szyperski, T.' 14 'Northeast Structural Genomics Consortium (NESG)' 15 # _citation.id primary _citation.title ;Solution NMR structure of a phage integrase SSP1947 fragment 59-159 from Staphylococcus saprophyticus ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eletsky, A.' 1 ? primary 'Mills, J.L.' 2 ? primary 'Hua, J.' 3 ? primary 'Belote, R.' 4 ? primary 'Ciccosanti, C.' 5 ? primary 'Jiang, M.' 6 ? primary 'Nair, R.' 7 ? primary 'Rost, B.' 8 ? primary 'Acton, T.B.' 9 ? primary 'Xiao, R.' 10 ? primary 'Swapna, G.V.T.' 11 ? primary 'Everett, J.K.' 12 ? primary 'Montelione, G.T.' 13 ? primary 'Szyperski, T.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Integrase _entity.formula_weight 13529.219 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 59-159' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFD DAIHEGYVIKNPTYKAELHASVLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFD DAIHEGYVIKNPTYKAELHASVLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier SyR103B # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 THR n 1 4 PHE n 1 5 ALA n 1 6 ASP n 1 7 TYR n 1 8 PHE n 1 9 TYR n 1 10 GLN n 1 11 TRP n 1 12 TYR n 1 13 GLU n 1 14 VAL n 1 15 ASN n 1 16 LYS n 1 17 LEU n 1 18 PRO n 1 19 HIS n 1 20 VAL n 1 21 SER n 1 22 GLU n 1 23 SER n 1 24 THR n 1 25 LYS n 1 26 ARG n 1 27 HIS n 1 28 TYR n 1 29 GLU n 1 30 SER n 1 31 ALA n 1 32 TYR n 1 33 LYS n 1 34 HIS n 1 35 ILE n 1 36 LYS n 1 37 ASP n 1 38 HIS n 1 39 PHE n 1 40 ARG n 1 41 HIS n 1 42 LYS n 1 43 LEU n 1 44 LEU n 1 45 LYS n 1 46 ASP n 1 47 ILE n 1 48 LYS n 1 49 ARG n 1 50 THR n 1 51 GLU n 1 52 TYR n 1 53 GLN n 1 54 LYS n 1 55 PHE n 1 56 LEU n 1 57 ASN n 1 58 GLU n 1 59 TYR n 1 60 GLY n 1 61 LEU n 1 62 THR n 1 63 HIS n 1 64 SER n 1 65 TYR n 1 66 GLU n 1 67 THR n 1 68 ILE n 1 69 ARG n 1 70 LYS n 1 71 LEU n 1 72 ASN n 1 73 SER n 1 74 TYR n 1 75 ILE n 1 76 ARG n 1 77 ASN n 1 78 ALA n 1 79 PHE n 1 80 ASP n 1 81 ASP n 1 82 ALA n 1 83 ILE n 1 84 HIS n 1 85 GLU n 1 86 GLY n 1 87 TYR n 1 88 VAL n 1 89 ILE n 1 90 LYS n 1 91 ASN n 1 92 PRO n 1 93 THR n 1 94 TYR n 1 95 LYS n 1 96 ALA n 1 97 GLU n 1 98 LEU n 1 99 HIS n 1 100 ALA n 1 101 SER n 1 102 VAL n 1 103 LEU n 1 104 GLU n 1 105 HIS n 1 106 HIS n 1 107 HIS n 1 108 HIS n 1 109 HIS n 1 110 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SSP1947 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 15305 / DSM 20229' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 342451 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21-23C' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q49VW8_STAS1 _struct_ref.pdbx_db_accession Q49VW8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD AIHEGYVIKNPTYKAELHASV ; _struct_ref.pdbx_align_begin 59 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KHQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q49VW8 _struct_ref_seq.db_align_beg 59 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KHQ MET A 1 ? UNP Q49VW8 ? ? 'expression tag' 1 1 1 2KHQ LEU A 103 ? UNP Q49VW8 ? ? 'expression tag' 103 2 1 2KHQ GLU A 104 ? UNP Q49VW8 ? ? 'expression tag' 104 3 1 2KHQ HIS A 105 ? UNP Q49VW8 ? ? 'expression tag' 105 4 1 2KHQ HIS A 106 ? UNP Q49VW8 ? ? 'expression tag' 106 5 1 2KHQ HIS A 107 ? UNP Q49VW8 ? ? 'expression tag' 107 6 1 2KHQ HIS A 108 ? UNP Q49VW8 ? ? 'expression tag' 108 7 1 2KHQ HIS A 109 ? UNP Q49VW8 ? ? 'expression tag' 109 8 1 2KHQ HIS A 110 ? UNP Q49VW8 ? ? 'expression tag' 110 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C CT-HSQC aliphatic' 1 4 1 '2D 1H-13C CT-HSQC aromatic' 1 5 1 '3D 1H-15N,13C NOESY' 1 6 1 '3D 1H-13C NOESY' 1 7 1 '3D HNCO' 1 8 1 '3D CBCA(CO)NH' 1 9 1 '3D HNCACB' 1 10 1 '3D HN(CA)CO' 1 11 1 '3D HBHA(CO)NH' 1 12 1 '3D HCCH-COSY aliphatic' 1 13 1 '3D HCCH-TOCSY aliphatic' 1 14 1 '3D HCCH-COSY aromatic' 1 15 1 '2D 1H-15N LR-HSQC' 1 16 2 '2D 1H-13C CT-HSQC methyl' 1 17 1 '2D MEXICO' 1 18 1 '2D CLEANEX' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.215 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.69 mM [U-100% 13C; U-100% 15N] syr103b_protein, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 50 uM DSS, 0.02 % sodium azide, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.6 mM [U-5% 13C; U-100% 15N] syr103b_protein, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 50 uM DSS, 0.02 % sodium azide, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 750 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KHQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Structure determination was performed iteratively with CYANA v2.1 using NOE-based constraints, PHI and PSI dihedral angle constraints from TALOS, hydrogen bond constraints based on preliminary structures and CLEANEX/MEXICO data. The 20 conformers out of 100 with the lowest target function were further refined by simulated annealing in explicit water bath using the program CNS with OPLSX force field. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KHQ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.32 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KHQ _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VnmrJ 2.1B 1 Guntert processing PROSA 6.0.2 2 'Keller and Wuthrich' 'data analysis' CARA 1.8.4 3 'Keller and Wuthrich' 'chemical shift assignment' CARA 1.8.4 4 'Keller and Wuthrich' 'peak picking' CARA 1.8.4 5 'Wishart and Sykes' 'data analysis' CSI 2.0 6 'Shen, Cornilescu, Delaglio and Bax' 'data analysis' TALOS 2007.068.09.07 7 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 8 'Huang, Tejero, Powers and Montelione' 'structure validation' AutoStructure 2.1.1 9 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.2.1 10 'Bhattacharya and Montelione' 'structure validation' PSVS 1.3 11 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KHQ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KHQ _struct.title ;Solution NMR structure of a phage integrase SSP1947 fragment 59-159 from Staphylococcus saprophyticus, Northeast Structural Genomics Consortium Target SyR103B ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KHQ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;all-alpha, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, DNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? LYS A 16 ? THR A 3 LYS A 16 1 ? 14 HELX_P HELX_P2 2 LEU A 17 ? VAL A 20 ? LEU A 17 VAL A 20 5 ? 4 HELX_P HELX_P3 3 SER A 21 ? PHE A 39 ? SER A 21 PHE A 39 1 ? 19 HELX_P HELX_P4 4 LEU A 43 ? ILE A 47 ? LEU A 43 ILE A 47 5 ? 5 HELX_P HELX_P5 5 LYS A 48 ? HIS A 63 ? LYS A 48 HIS A 63 1 ? 16 HELX_P HELX_P6 6 SER A 64 ? GLU A 85 ? SER A 64 GLU A 85 1 ? 22 HELX_P HELX_P7 7 ASN A 91 ? ALA A 96 ? ASN A 91 ALA A 96 5 ? 6 HELX_P HELX_P8 8 ALA A 100 ? GLU A 104 ? ALA A 100 GLU A 104 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2KHQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 HIS 109 109 109 HIS HIS A . n A 1 110 HIS 110 110 110 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.01 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2KHQ _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id syr103b_protein-1 0.69 ? mM '[U-100% 13C; U-100% 15N]' 1 MES-2 20 ? mM ? 1 'sodium chloride-3' 200 ? mM ? 1 'calcium chloride-4' 5 ? mM ? 1 DSS-5 50 ? uM ? 1 'sodium azide-6' 0.02 ? % ? 1 syr103b_protein-7 0.6 ? mM '[U-5% 13C; U-100% 15N]' 2 MES-8 20 ? mM ? 2 'sodium chloride-9' 200 ? mM ? 2 'calcium chloride-10' 5 ? mM ? 2 DSS-11 50 ? uM ? 2 'sodium azide-12' 0.02 ? % ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KHQ _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 180 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 2177 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 408 _pdbx_nmr_constraints.NOE_long_range_total_count 648 _pdbx_nmr_constraints.NOE_medium_range_total_count 622 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 499 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 59 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 59 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HB3 A GLU 97 ? ? HD2 A HIS 99 ? ? 1.21 2 1 HZ1 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.58 3 3 HZ1 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.60 4 4 HZ2 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.52 5 12 HZ1 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.56 6 12 HG1 A THR 3 ? ? OD1 A ASP 6 ? ? 1.60 7 13 HD1 A PHE 39 ? ? HD2 A LYS 42 ? ? 1.32 8 13 HZ1 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.56 9 16 HZ3 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.57 10 20 HD1 A PHE 39 ? ? HD2 A LYS 42 ? ? 1.27 11 20 HZ1 A LYS 42 ? ? OD2 A ASP 46 ? ? 1.55 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 39 ? ? -101.30 77.37 2 1 LYS A 95 ? ? -106.97 41.97 3 1 GLU A 104 ? ? -62.80 95.29 4 2 THR A 62 ? ? -141.41 18.22 5 2 ALA A 96 ? ? -78.07 47.22 6 3 HIS A 19 ? ? -130.93 -56.66 7 4 HIS A 19 ? ? -123.41 -51.05 8 4 ILE A 47 ? ? -67.59 98.82 9 4 TYR A 94 ? ? -87.48 -78.04 10 4 LEU A 98 ? ? -84.51 43.30 11 6 ASN A 15 ? ? -101.84 -60.80 12 6 PHE A 39 ? ? -96.87 58.32 13 6 HIS A 106 ? ? -83.93 -75.52 14 6 HIS A 107 ? ? 173.44 154.91 15 7 PHE A 39 ? ? -96.60 51.22 16 7 HIS A 106 ? ? 166.81 141.75 17 8 ASN A 15 ? ? -110.97 -73.01 18 8 PHE A 39 ? ? -107.59 70.49 19 8 TYR A 87 ? ? -89.91 -70.12 20 8 LYS A 90 ? ? -163.62 -168.33 21 10 ASN A 15 ? ? -124.52 -55.08 22 10 VAL A 88 ? ? -135.86 -158.83 23 10 ASN A 91 ? ? -171.68 139.41 24 10 HIS A 108 ? ? -170.29 138.30 25 11 TYR A 94 ? ? -143.48 -62.44 26 11 SER A 101 ? ? -145.39 -64.57 27 11 LEU A 103 ? ? -118.08 -158.12 28 12 LEU A 17 ? ? -151.40 -61.95 29 12 HIS A 41 ? ? -156.24 57.76 30 13 ASN A 15 ? ? -108.39 -73.83 31 13 ARG A 40 ? ? -97.65 -63.06 32 13 LEU A 98 ? ? 59.73 79.31 33 14 ASN A 15 ? ? -101.78 -77.38 34 14 PRO A 92 ? ? -68.47 -149.91 35 14 THR A 93 ? ? 54.06 17.45 36 14 HIS A 109 ? ? 69.80 159.82 37 15 ASN A 15 ? ? -108.29 -72.25 38 15 VAL A 102 ? ? -141.66 -35.89 39 16 ILE A 89 ? ? -76.53 -164.16 40 16 ALA A 100 ? ? -66.73 98.27 41 16 HIS A 109 ? ? -164.30 -82.11 42 17 LYS A 95 ? ? 74.62 -6.61 43 19 HIS A 19 ? ? -121.62 -50.51 44 19 PHE A 39 ? ? -92.55 52.07 45 19 ILE A 89 ? ? -71.96 -168.33 46 19 LYS A 90 ? ? -83.13 39.88 47 19 ASN A 91 ? ? 70.10 131.20 48 19 THR A 93 ? ? -79.13 34.65 49 19 LYS A 95 ? ? -108.95 42.89 50 19 HIS A 106 ? ? -120.03 -65.45 51 20 ASN A 15 ? ? -106.79 -65.68 52 20 LEU A 17 ? ? -150.00 -59.67 53 20 VAL A 102 ? ? -141.93 -36.35 #