data_2KKE # _entry.id 2KKE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KKE pdb_00002kke 10.2210/pdb2kke/pdb RCSB RCSB101229 ? ? BMRB 16357 ? ? WWPDB D_1000101229 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 16357 BMRB . unspecified TR5 TargetDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KKE _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-06-18 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Swapna, G.V.T.' 1 'Gunsalus, X.' 2 'Huang, L.' 3 'Xiao, K.' 4 'Everett, J.K.' 5 'Acton, T.B.' 6 'Montelione, G.T.' 7 'Northeast Structural Genomics Consortium (NESG)' 8 # _citation.id primary _citation.title ;NMR Solution Structure of a putative uncharacterized protein from Methanobacterium thermoautotrophicum, Northeast Structural Genomics Consortium Target:TR5 ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Swapna, G.V.T.' 1 ? primary 'Gunsalus, X.' 2 ? primary 'Huang, L.' 3 ? primary 'Xiao, K.' 4 ? primary 'Everett, J.K.' 5 ? primary 'Acton, T.B.' 6 ? primary 'Montelione, G.T.' 7 ? # _cell.entry_id 2KKE _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KKE _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Uncharacterized protein' _entity.formula_weight 5972.941 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MVGRRPGGGLKDTKPVVVRLYPDEIEALKSRVPANTSMSAYIRRIILNHLEDE _entity_poly.pdbx_seq_one_letter_code_can MVGRRPGGGLKDTKPVVVRLYPDEIEALKSRVPANTSMSAYIRRIILNHLEDE _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier TR5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLY n 1 4 ARG n 1 5 ARG n 1 6 PRO n 1 7 GLY n 1 8 GLY n 1 9 GLY n 1 10 LEU n 1 11 LYS n 1 12 ASP n 1 13 THR n 1 14 LYS n 1 15 PRO n 1 16 VAL n 1 17 VAL n 1 18 VAL n 1 19 ARG n 1 20 LEU n 1 21 TYR n 1 22 PRO n 1 23 ASP n 1 24 GLU n 1 25 ILE n 1 26 GLU n 1 27 ALA n 1 28 LEU n 1 29 LYS n 1 30 SER n 1 31 ARG n 1 32 VAL n 1 33 PRO n 1 34 ALA n 1 35 ASN n 1 36 THR n 1 37 SER n 1 38 MET n 1 39 SER n 1 40 ALA n 1 41 TYR n 1 42 ILE n 1 43 ARG n 1 44 ARG n 1 45 ILE n 1 46 ILE n 1 47 LEU n 1 48 ASN n 1 49 HIS n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MTH467, MTH_467' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanothermobacter thermautotrophicus str. Delta H' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 187420 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET15b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O26567_METTH _struct_ref.pdbx_db_accession O26567 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MVGRRPGGGLKDTKPVVVRLYPDEIEALKSRVPANTSMSAYIRRIILNHLEDD _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KKE A 1 ? 53 ? O26567 1 ? 53 ? 1 53 2 1 2KKE B 1 ? 53 ? O26567 1 ? 53 ? 201 253 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KKE GLU A 53 ? UNP O26567 ASP 53 'SEE REMARK 999' 53 1 2 2KKE GLU B 53 ? UNP O26567 ASP 53 'SEE REMARK 999' 253 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HBHA(CO)NH' 1 6 1 '3D HCCH-TOCSY' 1 7 1 '3D HNCO' 1 8 1 '3D 1H-13C NOESY' 1 9 1 '3D 1H-15N NOESY' 1 10 3 '3D- X-filtered NOESY' 1 11 2 '2D 1H-15N HSQC' 1 12 2 '2D 1H-13C HSQC' 1 13 2 '2D HNOE' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '300 mM NaCl' _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.4 mM [U-100% 13C; U-100% 15N] TR5, 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '0.95 mM [U-10% 13C; U-100% 15N] TR5, 95% H2O/5% D2O' 2 '95% H2O/5% D2O' '0.4 mM [U-10% 13C; U-100% 15N] + unlabeled TR5 protein TR5, 95% H2O/5% D2O' 3 '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 500 Varian UNITY 2 'Varian Unity' # _pdbx_nmr_refine.entry_id 2KKE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Initial NOESY assignments for the monomer were made using AutoStructure and the solution structure of the dimer was obtained using CYANA-2.1. Constraints for the dimer interface were obtained from the x-filtered NOESY data and slow exchanging amides from H/D exchange. 100 structures were calculated and 20 best conformers were then refined in a shell of water using CNS. Initial dihedral angle constraints were obtained from TALOS. Final structure quality factors determined using PSVS software: ordered residues are defined as (10-53,212-236,238-251). (a)RMSD(ordered residues) all Backbone atoms: 0.7A; all heavy atoms: 1.0A. (b) Ramchandran statistics for all ordered residues: Most favoured region: 93.1%; Additionally allowed region: 6.6%; Generously allowed region 0.1% and disallowed region: 0.2%. (c) Procheck scores for all ordered residues (Raw/Z) phi-psi -0.11/-0.12; All: -0.07/-0.41; (d) MolProbity clash score (Raw/Z): 16.97/-1.39. (e) RPF scores for the goodness of fit to NOESY data: Recall :0.913; Precision:0.849; F-measure:0.88; Final DP score :0.703 ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2KKE _pdbx_nmr_details.text ;The structure was determined using triple resonance NMR spectroscopy. Automated backbone assignments were made using AutoAssign software. Sidechain assignments were completed manually. The oligomeric state was confirmed to be a dimer from sedimentation-equilibrium analysis (Kd =0.3uM) and static light scattering experiment that reported 90% of the protein in a dimer with a molecular weight of 15.03kD. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KKE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KKE _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.2.1 1 'Guntert, Mumenthaler and Wuthrich' 'geometry optimization' CYANA 2.1 2 'Brunger, Adams, Clore, Gros, Nilges and Read' 'geometry optimization' CNS 2.0.6 3 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 2.0.6 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KKE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KKE _struct.title ;Solution NMR Structure of a dimeric protein of unknown function from Methanobacterium thermoautotrophicum, Northeast Structural Genomics Consortium Target TR5 ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KKE _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown function' _struct_keywords.text ;Protein NMR, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), Target TR5, PSI-2, Protein Structure Initiative, Methanothermobacter thermautotrophicus, O26567_METTH, Structural Genomics, Northeast Structural Genomics Consortium, NESG, Unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 21 ? SER A 30 ? TYR A 21 SER A 30 1 ? 10 HELX_P HELX_P2 2 SER A 37 ? ASP A 52 ? SER A 37 ASP A 52 1 ? 16 HELX_P HELX_P3 3 TYR B 21 ? LYS B 29 ? TYR B 221 LYS B 229 1 ? 9 HELX_P HELX_P4 4 SER B 37 ? GLU B 51 ? SER B 237 GLU B 251 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 14 ? LEU A 20 ? LYS A 14 LEU A 20 A 2 LYS B 14 ? LEU B 20 ? LYS B 214 LEU B 220 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 20 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 20 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 14 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 214 # _atom_sites.entry_id 2KKE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLU 53 53 53 GLU GLU A . n B 1 1 MET 1 201 201 MET MET B . n B 1 2 VAL 2 202 202 VAL VAL B . n B 1 3 GLY 3 203 203 GLY GLY B . n B 1 4 ARG 4 204 204 ARG ARG B . n B 1 5 ARG 5 205 205 ARG ARG B . n B 1 6 PRO 6 206 206 PRO PRO B . n B 1 7 GLY 7 207 207 GLY GLY B . n B 1 8 GLY 8 208 208 GLY GLY B . n B 1 9 GLY 9 209 209 GLY GLY B . n B 1 10 LEU 10 210 210 LEU LEU B . n B 1 11 LYS 11 211 211 LYS LYS B . n B 1 12 ASP 12 212 212 ASP ASP B . n B 1 13 THR 13 213 213 THR THR B . n B 1 14 LYS 14 214 214 LYS LYS B . n B 1 15 PRO 15 215 215 PRO PRO B . n B 1 16 VAL 16 216 216 VAL VAL B . n B 1 17 VAL 17 217 217 VAL VAL B . n B 1 18 VAL 18 218 218 VAL VAL B . n B 1 19 ARG 19 219 219 ARG ARG B . n B 1 20 LEU 20 220 220 LEU LEU B . n B 1 21 TYR 21 221 221 TYR TYR B . n B 1 22 PRO 22 222 222 PRO PRO B . n B 1 23 ASP 23 223 223 ASP ASP B . n B 1 24 GLU 24 224 224 GLU GLU B . n B 1 25 ILE 25 225 225 ILE ILE B . n B 1 26 GLU 26 226 226 GLU GLU B . n B 1 27 ALA 27 227 227 ALA ALA B . n B 1 28 LEU 28 228 228 LEU LEU B . n B 1 29 LYS 29 229 229 LYS LYS B . n B 1 30 SER 30 230 230 SER SER B . n B 1 31 ARG 31 231 231 ARG ARG B . n B 1 32 VAL 32 232 232 VAL VAL B . n B 1 33 PRO 33 233 233 PRO PRO B . n B 1 34 ALA 34 234 234 ALA ALA B . n B 1 35 ASN 35 235 235 ASN ASN B . n B 1 36 THR 36 236 236 THR THR B . n B 1 37 SER 37 237 237 SER SER B . n B 1 38 MET 38 238 238 MET MET B . n B 1 39 SER 39 239 239 SER SER B . n B 1 40 ALA 40 240 240 ALA ALA B . n B 1 41 TYR 41 241 241 TYR TYR B . n B 1 42 ILE 42 242 242 ILE ILE B . n B 1 43 ARG 43 243 243 ARG ARG B . n B 1 44 ARG 44 244 244 ARG ARG B . n B 1 45 ILE 45 245 245 ILE ILE B . n B 1 46 ILE 46 246 246 ILE ILE B . n B 1 47 LEU 47 247 247 LEU LEU B . n B 1 48 ASN 48 248 248 ASN ASN B . n B 1 49 HIS 49 249 249 HIS HIS B . n B 1 50 LEU 50 250 250 LEU LEU B . n B 1 51 GLU 51 251 251 GLU GLU B . n B 1 52 ASP 52 252 252 ASP ASP B . n B 1 53 GLU 53 253 253 GLU GLU B . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.sequence_details ;NMR ANALYSIS SHOWED THAT THE RESIDUE AT 53 AND 253 IS A GLU AND NOT AN ASP. THE DATABASE HAS TO BE CORRECTED FOR THIS. GLU IS CORRECT. ; _pdbx_entry_details.entry_id 2KKE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id TR5-1-1 0.4 ? mM '[U-100% 13C; U-100% 15N]' 1 TR5-2-2 0.95 ? mM '[U-10% 13C; U-100% 15N]' 2 TR5-3-3 0.4 ? mM '[U-10% 13C; U-100% 15N] + unlabeled TR5 protein' 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 11 ? ? -142.40 18.96 2 1 ARG B 205 ? ? 64.75 81.20 3 1 LEU B 210 ? ? -148.36 -65.19 4 1 LYS B 211 ? ? -97.74 35.93 5 2 ARG B 205 ? ? 64.94 85.04 6 2 LEU B 210 ? ? -150.20 -64.60 7 2 LYS B 211 ? ? -83.96 32.53 8 2 ASP B 212 ? ? -77.50 21.30 9 3 PRO A 6 ? ? -43.60 154.16 10 3 ARG B 205 ? ? 61.62 82.97 11 3 PRO B 206 ? ? -63.72 -79.10 12 3 LEU B 210 ? ? -132.96 -76.77 13 3 THR B 236 ? ? -69.94 98.34 14 3 ASN B 248 ? ? -79.96 37.48 15 3 HIS B 249 ? ? -144.34 -40.91 16 4 PRO A 6 ? ? -44.63 154.46 17 4 LYS A 11 ? ? -97.22 32.08 18 4 ARG A 31 ? ? -147.56 -28.76 19 4 ASP A 52 ? ? 174.75 -51.39 20 4 LEU B 210 ? ? -142.53 -70.95 21 5 ARG B 204 ? ? 70.12 166.92 22 5 ALA B 234 ? ? -74.77 20.87 23 5 ASP B 252 ? ? -133.29 -53.42 24 6 ARG B 204 ? ? -113.66 -164.49 25 6 LEU B 210 ? ? -123.71 -101.59 26 6 SER B 230 ? ? -76.45 48.88 27 6 ARG B 231 ? ? 177.96 -31.05 28 6 ASP B 252 ? ? -88.28 -82.95 29 7 ARG B 204 ? ? -107.25 -169.21 30 7 LEU B 210 ? ? -102.84 -86.83 31 7 MET B 238 ? ? 48.09 -81.07 32 7 ASP B 252 ? ? -126.52 -67.98 33 8 ARG A 4 ? ? -120.33 -161.02 34 8 LYS B 211 ? ? -145.44 23.92 35 8 ASP B 252 ? ? -115.72 -71.35 36 9 ASP A 12 ? ? -60.91 -80.35 37 9 LEU B 210 ? ? -102.88 -72.77 38 9 SER B 237 ? ? 72.09 -174.95 39 9 MET B 238 ? ? -83.40 -70.51 40 9 ASP B 252 ? ? -108.44 -75.43 41 10 LEU B 210 ? ? -117.82 -84.60 42 10 ASP B 252 ? ? -127.07 -75.06 43 11 LEU A 10 ? ? -106.50 -76.63 44 11 ASP A 52 ? ? -83.48 -84.60 45 11 MET B 238 ? ? 46.52 -80.54 46 12 LYS A 11 ? ? -157.21 23.07 47 12 ASN A 48 ? ? -72.49 21.21 48 12 ASP B 212 ? ? -168.15 -55.40 49 13 PRO A 6 ? ? -68.57 -167.70 50 13 VAL B 202 ? ? -66.93 4.98 51 13 LYS B 211 ? ? -104.63 43.84 52 13 ASP B 252 ? ? -137.97 -72.53 53 14 PRO A 6 ? ? -79.67 -165.03 54 14 LEU A 10 ? ? -61.37 -72.12 55 14 VAL B 202 ? ? -140.16 27.35 56 14 LYS B 211 ? ? -97.04 36.56 57 15 ARG A 5 ? ? 65.64 97.41 58 15 LEU A 10 ? ? -103.96 -65.19 59 15 LYS A 29 ? ? -65.26 1.32 60 15 ARG B 205 ? ? 65.62 105.73 61 15 ASP B 252 ? ? -159.18 -59.50 62 16 PRO A 6 ? ? -77.80 -159.44 63 16 LEU A 10 ? ? -127.62 -69.25 64 16 LYS A 11 ? ? -148.01 24.13 65 16 LEU B 210 ? ? -95.22 -69.88 66 16 LYS B 229 ? ? -66.60 0.03 67 17 ARG A 5 ? ? 64.07 97.57 68 17 PRO A 6 ? ? -68.11 -172.84 69 17 LEU A 10 ? ? -58.18 -80.08 70 17 ASN A 35 ? ? -67.58 -71.07 71 17 ARG B 205 ? ? 51.11 86.00 72 18 ARG A 5 ? ? 60.65 93.33 73 18 ASP A 12 ? ? -89.87 33.49 74 18 ARG B 205 ? ? 69.50 94.00 75 18 ASN B 248 ? ? -66.30 4.71 76 18 ASP B 252 ? ? -104.13 -69.21 77 19 ARG A 4 ? ? -171.75 -178.97 78 19 ARG A 5 ? ? 75.63 95.93 79 19 MET A 38 ? ? 37.67 -74.55 80 19 VAL B 202 ? ? -144.51 18.73 81 19 LEU B 210 ? ? -109.71 -75.58 82 19 LEU B 228 ? ? -61.99 -70.43 83 19 ALA B 234 ? ? -68.75 4.32 84 20 LEU A 10 ? ? -139.28 -75.32 85 20 ARG B 205 ? ? 67.75 91.19 86 20 PRO B 206 ? ? -81.66 -71.19 87 20 LEU B 210 ? ? -99.66 -62.15 88 20 ASP B 252 ? ? -105.14 -60.08 #