data_2KP3 # _entry.id 2KP3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KP3 pdb_00002kp3 10.2210/pdb2kp3/pdb RCSB RCSB101396 ? ? WWPDB D_1000101396 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KP3 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gonzalez, C.' 1 'Martn-Pintado, N.' 2 'Watts, J.' 3 'Gomez-Pinto, I.' 4 'Dhama, M.' 5 'Orozco, M.' 6 'Schwartzentruber, J.' 7 'Portella, G.' 8 # _citation.id primary _citation.title ;Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 2498 _citation.page_last 2511 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20071751 _citation.pdbx_database_id_DOI 10.1093/nar/gkp1225 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Watts, J.K.' 1 ? primary 'Martin-Pintado, N.' 2 ? primary 'Gomez-Pinto, I.' 3 ? primary 'Schwartzentruber, J.' 4 ? primary 'Portella, G.' 5 ? primary 'Orozco, M.' 6 ? primary 'Gonzalez, C.' 7 ? primary 'Damha, M.J.' 8 ? # _cell.entry_id 2KP3 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KP3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O)P*(UAR)P*(GAO)P*(GAO))-3') ; 3201.957 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') ; 3121.908 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GAO)(CAR)(UAR)(A5O)(UAR)(A5O)(A5O)(UAR)(GAO)(GAO)' GCUAUAAUGG A ? 2 polyribonucleotide no no CCAUUAUAGC CCAUUAUAGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GAO n 1 2 CAR n 1 3 UAR n 1 4 A5O n 1 5 UAR n 1 6 A5O n 1 7 A5O n 1 8 UAR n 1 9 GAO n 1 10 GAO n 2 1 C n 2 2 C n 2 3 A n 2 4 U n 2 5 U n 2 6 A n 2 7 U n 2 8 A n 2 9 G n 2 10 C n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2KP3 2KP3 1 1 GCUAUAAUGG ? 2 PDB 2KP3 2KP3 2 1 CCAUUAUAGC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KP3 A 1 ? 10 ? 2KP3 1 ? 10 ? 1 10 2 2 2KP3 B 1 ? 10 ? 2KP3 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A5O 'RNA linking' n ;ADENINE ARABINOSE-5'-PHOSPHATE ; ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CAR 'RNA linking' n ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GAO 'RNA linking' n ;GUANINE ARABINOSE-5'-PHOSPHATE ; ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UAR 'RNA linking' n ;URACIL ARABINOSE-5'-PHOSPHATE ; ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.8 mM ANA/RNA hybrid duplex-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Advance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Advance' # _pdbx_nmr_refine.entry_id 2KP3 _pdbx_nmr_refine.method 'molecular dynamics, matrix relaxation' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KP3 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KP3 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber ? 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'data analysis' Amber ? 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' Amber ? 3 Goddard refinement Amber ? 4 Goddard 'data analysis' Amber ? 5 Goddard 'structure solution' Amber ? 6 'Koradi, Billeter and Wuthrich' refinement Amber ? 7 'Koradi, Billeter and Wuthrich' 'data analysis' Amber ? 8 'Koradi, Billeter and Wuthrich' 'structure solution' Amber ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KP3 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KP3 _struct.title 'Structure of ANA-RNA hybrid duplex' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KP3 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'ANA, arabinonucleic acid, nucleic acid structure, NMR/MD/TI, hybrid duplex, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GAO 1 "O3'" ? ? ? 1_555 A CAR 2 P ? ? A GAO 1 A CAR 2 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A CAR 2 "O3'" ? ? ? 1_555 A UAR 3 P ? ? A CAR 2 A UAR 3 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale3 covale both ? A UAR 3 "O3'" ? ? ? 1_555 A A5O 4 P ? ? A UAR 3 A A5O 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale one ? A A5O 4 "O3'" ? ? ? 1_555 A UAR 5 P ? ? A A5O 4 A UAR 5 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? A UAR 5 "O3'" ? ? ? 1_555 A A5O 6 P ? ? A UAR 5 A A5O 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale one ? A A5O 6 "O3'" ? ? ? 1_555 A A5O 7 P ? ? A A5O 6 A A5O 7 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale7 covale one ? A A5O 7 "O3'" ? ? ? 1_555 A UAR 8 P ? ? A A5O 7 A UAR 8 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale8 covale both ? A UAR 8 "O3'" ? ? ? 1_555 A GAO 9 P ? ? A UAR 8 A GAO 9 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale9 covale both ? A GAO 9 "O3'" ? ? ? 1_555 A GAO 10 P ? ? A GAO 9 A GAO 10 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? A GAO 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A GAO 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GAO 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A GAO 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GAO 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A GAO 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CAR 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A CAR 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CAR 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A CAR 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CAR 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A CAR 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A UAR 3 N3 ? ? ? 1_555 B A 8 N1 ? ? A UAR 3 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A UAR 3 O4 ? ? ? 1_555 B A 8 N6 ? ? A UAR 3 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A5O 4 N1 ? ? ? 1_555 B U 7 N3 ? ? A A5O 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A5O 4 N6 ? ? ? 1_555 B U 7 O4 ? ? A A5O 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A UAR 5 N3 ? ? ? 1_555 B A 6 N1 ? ? A UAR 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A UAR 5 O4 ? ? ? 1_555 B A 6 N6 ? ? A UAR 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A5O 6 N1 ? ? ? 1_555 B U 5 N3 ? ? A A5O 6 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A5O 6 N6 ? ? ? 1_555 B U 5 O4 ? ? A A5O 6 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A5O 7 N1 ? ? ? 1_555 B U 4 N3 ? ? A A5O 7 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A5O 7 N6 ? ? ? 1_555 B U 4 O4 ? ? A A5O 7 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A UAR 8 N3 ? ? ? 1_555 B A 3 N1 ? ? A UAR 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A UAR 8 O4 ? ? ? 1_555 B A 3 N6 ? ? A UAR 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A GAO 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A GAO 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A GAO 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A GAO 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A GAO 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A GAO 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A GAO 10 N1 ? ? ? 1_555 B C 1 N3 ? ? A GAO 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A GAO 10 N2 ? ? ? 1_555 B C 1 O2 ? ? A GAO 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A GAO 10 O6 ? ? ? 1_555 B C 1 N4 ? ? A GAO 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2KP3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GAO 1 1 1 GAO GAO A . n A 1 2 CAR 2 2 2 CAR CAR A . n A 1 3 UAR 3 3 3 UAR UAR A . n A 1 4 A5O 4 4 4 A5O A5O A . n A 1 5 UAR 5 5 5 UAR UAR A . n A 1 6 A5O 6 6 6 A5O A5O A . n A 1 7 A5O 7 7 7 A5O A5O A . n A 1 8 UAR 8 8 8 UAR UAR A . n A 1 9 GAO 9 9 9 GAO GAO A . n A 1 10 GAO 10 10 10 GAO GAO A . n B 2 1 C 1 11 11 C C B . n B 2 2 C 2 12 12 C C B . n B 2 3 A 3 13 13 A A B . n B 2 4 U 4 14 14 U U B . n B 2 5 U 5 15 15 U U B . n B 2 6 A 6 16 16 A A B . n B 2 7 U 7 17 17 U U B . n B 2 8 A 8 18 18 A A B . n B 2 9 G 9 19 19 G G B . n B 2 10 C 10 20 20 C C B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GAO 1 A GAO 1 ? G ;GUANINE ARABINOSE-5'-PHOSPHATE ; 2 A CAR 2 A CAR 2 ? DC ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; 3 A UAR 3 A UAR 3 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 4 A A5O 4 A A5O 4 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 5 A UAR 5 A UAR 5 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 6 A A5O 6 A A5O 6 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 7 A A5O 7 A A5O 7 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 8 A UAR 8 A UAR 8 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 9 A GAO 9 A GAO 9 ? G ;GUANINE ARABINOSE-5'-PHOSPHATE ; 10 A GAO 10 A GAO 10 ? G ;GUANINE ARABINOSE-5'-PHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_nmr_exptl_sample.component 'ANA/RNA hybrid duplex-1' _pdbx_nmr_exptl_sample.concentration 0.8 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 10 _pdbx_validate_close_contact.auth_atom_id_1 "HO5'" _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 C _pdbx_validate_close_contact.auth_seq_id_1 11 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 12 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.58 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.900 1.420 0.480 0.010 N 2 2 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.926 1.420 0.506 0.010 N 3 3 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.933 1.420 0.513 0.010 N 4 4 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.898 1.420 0.478 0.010 N 5 5 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.914 1.420 0.494 0.010 N 6 6 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.879 1.420 0.459 0.010 N 7 7 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.907 1.420 0.487 0.010 N 8 8 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.921 1.420 0.501 0.010 N 9 9 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.922 1.420 0.502 0.010 N 10 10 "C2'" B C 11 ? ? "O2'" B C 11 ? ? 1.912 1.420 0.492 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.46 108.50 5.96 0.70 N 2 1 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 131.84 110.60 21.24 3.00 N 3 1 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 83.92 113.30 -29.38 2.90 N 4 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.40 108.50 4.90 0.70 N 5 1 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.56 108.50 5.06 0.70 N 6 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.40 118.60 -4.20 0.60 N 7 1 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.33 108.50 5.83 0.70 N 8 1 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.71 108.50 5.21 0.70 N 9 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.43 118.60 -4.17 0.60 N 10 1 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.32 108.50 4.82 0.70 N 11 1 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.35 108.50 4.85 0.70 N 12 1 N1 B G 19 ? ? C6 B G 19 ? ? O6 B G 19 ? ? 116.24 119.90 -3.66 0.60 N 13 2 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 116.35 108.50 7.85 0.70 N 14 2 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 128.91 110.60 18.31 3.00 N 15 2 N1 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 122.80 118.90 3.90 0.60 N 16 2 N3 B C 11 ? ? C2 B C 11 ? ? O2 B C 11 ? ? 117.50 121.90 -4.40 0.70 N 17 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.55 108.50 5.05 0.70 N 18 2 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.67 117.00 -3.33 0.50 N 19 2 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.37 118.60 -5.23 0.60 N 20 2 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 112.87 108.50 4.37 0.70 N 21 2 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.58 108.50 5.08 0.70 N 22 2 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.93 117.00 -3.07 0.50 N 23 2 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.31 117.70 3.61 0.50 N 24 2 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.26 118.60 -5.34 0.60 N 25 2 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 114.89 108.50 6.39 0.70 N 26 2 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.42 117.00 -3.58 0.50 N 27 2 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.07 117.70 3.37 0.50 N 28 2 C6 B A 18 ? ? C5 B A 18 ? ? N7 B A 18 ? ? 136.51 132.30 4.21 0.70 N 29 2 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.19 118.60 -4.41 0.60 N 30 2 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 114.36 108.50 5.86 0.70 N 31 3 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.04 108.50 6.54 0.70 N 32 3 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 84.90 113.30 -28.40 2.90 N 33 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.52 108.50 5.02 0.70 N 34 3 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.73 108.50 4.23 0.70 N 35 3 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.91 118.60 -4.69 0.60 N 36 3 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.51 108.50 5.01 0.70 N 37 3 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.74 108.50 5.24 0.70 N 38 3 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.93 118.60 -4.67 0.60 N 39 3 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.60 108.50 5.10 0.70 N 40 3 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.09 108.50 4.59 0.70 N 41 3 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.85 117.70 3.15 0.50 N 42 3 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 113.64 108.50 5.14 0.70 N 43 4 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.72 108.50 6.22 0.70 N 44 4 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 129.80 110.60 19.20 3.00 N 45 4 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 82.14 113.30 -31.16 2.90 N 46 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.38 108.50 4.88 0.70 N 47 4 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.81 108.50 5.31 0.70 N 48 4 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.12 118.60 -4.48 0.60 N 49 4 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.79 108.50 5.29 0.70 N 50 4 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.36 108.50 5.86 0.70 N 51 4 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.39 118.60 -4.21 0.60 N 52 4 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.96 108.50 5.46 0.70 N 53 4 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.86 108.50 5.36 0.70 N 54 4 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 55 4 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 112.87 108.50 4.37 0.70 N 56 5 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.75 108.50 6.25 0.70 N 57 5 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 129.07 110.60 18.47 3.00 N 58 5 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 84.82 113.30 -28.48 2.90 N 59 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.15 108.50 4.65 0.70 N 60 5 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.44 108.50 4.94 0.70 N 61 5 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.58 117.00 -3.42 0.50 N 62 5 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.78 118.60 -4.82 0.60 N 63 5 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.33 108.50 5.83 0.70 N 64 5 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.01 108.50 4.51 0.70 N 65 5 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.98 118.60 -3.62 0.60 N 66 5 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.20 108.50 4.70 0.70 N 67 5 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 68 5 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.99 117.70 3.29 0.50 N 69 5 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.97 118.60 -3.63 0.60 N 70 5 N1 B G 19 ? ? C6 B G 19 ? ? O6 B G 19 ? ? 116.24 119.90 -3.66 0.60 N 71 5 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 113.19 108.50 4.69 0.70 N 72 6 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.70 108.50 6.20 0.70 N 73 6 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 128.86 110.60 18.26 3.00 N 74 6 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 79.54 113.30 -33.76 2.90 N 75 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.09 108.50 4.59 0.70 N 76 6 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.22 108.50 5.72 0.70 N 77 6 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.64 118.60 -3.96 0.60 N 78 6 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.88 108.50 6.38 0.70 N 79 6 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.88 108.50 5.38 0.70 N 80 6 "O4'" B A 16 ? ? "C1'" B A 16 ? ? N9 B A 16 ? ? 112.71 108.50 4.21 0.70 N 81 6 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.83 118.60 -3.77 0.60 N 82 6 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 114.39 108.50 5.89 0.70 N 83 6 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 112.96 108.50 4.46 0.70 N 84 6 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.72 117.70 3.02 0.50 N 85 6 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 112.79 108.50 4.29 0.70 N 86 7 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.33 108.50 5.83 0.70 N 87 7 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 132.64 110.60 22.04 3.00 N 88 7 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 88.61 113.30 -24.69 2.90 N 89 7 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 114.31 108.50 5.81 0.70 N 90 7 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.92 108.50 5.42 0.70 N 91 7 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.35 118.60 -4.25 0.60 N 92 7 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.60 108.50 5.10 0.70 N 93 7 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.91 118.60 -3.69 0.60 N 94 7 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.63 108.50 5.13 0.70 N 95 7 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.43 108.50 4.93 0.70 N 96 7 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.71 117.00 -3.29 0.50 N 97 7 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.91 117.70 3.21 0.50 N 98 7 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.55 118.60 -4.05 0.60 N 99 7 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 113.71 108.50 5.21 0.70 N 100 8 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.63 108.50 7.13 0.70 N 101 8 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 133.72 110.60 23.12 3.00 N 102 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 114.03 108.50 5.53 0.70 N 103 8 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.48 108.50 4.98 0.70 N 104 8 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.78 117.00 -3.22 0.50 N 105 8 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.85 118.60 -4.75 0.60 N 106 8 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.75 108.50 5.25 0.70 N 107 8 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.05 108.50 4.55 0.70 N 108 8 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.23 118.60 -4.37 0.60 N 109 8 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.02 117.70 3.32 0.50 N 110 8 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 112.91 108.50 4.41 0.70 N 111 9 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.97 108.50 6.47 0.70 N 112 9 "C1'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 130.91 110.60 20.31 3.00 N 113 9 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 88.93 113.30 -24.37 2.90 N 114 9 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 114.19 108.50 5.69 0.70 N 115 9 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.01 108.50 5.51 0.70 N 116 9 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.69 117.00 -3.31 0.50 N 117 9 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 112.88 118.60 -5.72 0.60 N 118 9 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.27 108.50 5.77 0.70 N 119 9 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.55 108.50 6.05 0.70 N 120 9 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 114.43 108.50 5.93 0.70 N 121 9 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.76 117.70 3.06 0.50 N 122 10 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.70 108.50 6.20 0.70 N 123 10 "C3'" B C 11 ? ? "C2'" B C 11 ? ? "O2'" B C 11 ? ? 83.63 113.30 -29.67 2.90 N 124 10 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.35 108.50 4.85 0.70 N 125 10 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.75 117.00 -3.25 0.50 N 126 10 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.18 118.60 -5.42 0.60 N 127 10 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.88 108.50 5.38 0.70 N 128 10 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.24 108.50 5.74 0.70 N 129 10 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.00 118.60 -4.60 0.60 N 130 10 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 112.83 108.50 4.33 0.70 N 131 10 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.20 117.70 3.50 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A B 13 ? ? 0.082 'SIDE CHAIN' 2 1 U B 15 ? ? 0.083 'SIDE CHAIN' 3 1 A B 16 ? ? 0.055 'SIDE CHAIN' 4 1 U B 17 ? ? 0.076 'SIDE CHAIN' 5 2 C B 12 ? ? 0.063 'SIDE CHAIN' 6 2 A B 13 ? ? 0.086 'SIDE CHAIN' 7 2 U B 15 ? ? 0.081 'SIDE CHAIN' 8 2 U B 17 ? ? 0.065 'SIDE CHAIN' 9 3 C B 12 ? ? 0.066 'SIDE CHAIN' 10 3 A B 13 ? ? 0.082 'SIDE CHAIN' 11 3 U B 15 ? ? 0.081 'SIDE CHAIN' 12 4 A B 13 ? ? 0.091 'SIDE CHAIN' 13 5 C B 12 ? ? 0.069 'SIDE CHAIN' 14 5 A B 13 ? ? 0.084 'SIDE CHAIN' 15 6 A B 13 ? ? 0.064 'SIDE CHAIN' 16 6 U B 17 ? ? 0.068 'SIDE CHAIN' 17 7 A B 13 ? ? 0.070 'SIDE CHAIN' 18 7 U B 14 ? ? 0.061 'SIDE CHAIN' 19 7 U B 15 ? ? 0.087 'SIDE CHAIN' 20 8 A B 13 ? ? 0.093 'SIDE CHAIN' 21 8 U B 15 ? ? 0.080 'SIDE CHAIN' 22 9 U B 15 ? ? 0.061 'SIDE CHAIN' 23 9 U B 17 ? ? 0.067 'SIDE CHAIN' 24 10 A B 13 ? ? 0.075 'SIDE CHAIN' 25 10 U B 14 ? ? 0.067 'SIDE CHAIN' 26 10 U B 15 ? ? 0.111 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 2KP3 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GAO 1 1_555 B C 10 1_555 -0.555 -0.156 0.229 24.989 2.020 -2.359 1 A_GAO1:C20_B A 1 ? B 20 ? 19 1 1 A CAR 2 1_555 B G 9 1_555 0.280 -0.093 -0.137 15.673 -14.878 3.402 2 A_CAR2:G19_B A 2 ? B 19 ? 19 1 1 A UAR 3 1_555 B A 8 1_555 -0.100 -0.048 0.013 -1.319 -7.163 -3.052 3 A_UAR3:A18_B A 3 ? B 18 ? 20 1 1 A A5O 4 1_555 B U 7 1_555 0.234 -0.079 0.055 -3.434 -17.045 -3.662 4 A_A5O4:U17_B A 4 ? B 17 ? 20 1 1 A UAR 5 1_555 B A 6 1_555 -0.200 -0.088 0.362 -3.523 -11.457 -0.123 5 A_UAR5:A16_B A 5 ? B 16 ? 20 1 1 A A5O 6 1_555 B U 5 1_555 0.022 -0.061 0.002 -5.736 -6.667 -1.791 6 A_A5O6:U15_B A 6 ? B 15 ? 20 1 1 A A5O 7 1_555 B U 4 1_555 0.318 -0.076 0.030 4.341 -18.357 0.193 7 A_A5O7:U14_B A 7 ? B 14 ? 20 1 1 A UAR 8 1_555 B A 3 1_555 -0.262 -0.091 0.210 -2.690 -16.842 0.199 8 A_UAR8:A13_B A 8 ? B 13 ? 20 1 1 A GAO 9 1_555 B C 2 1_555 -0.055 -0.131 0.161 -7.272 -11.117 0.080 9 A_GAO9:C12_B A 9 ? B 12 ? 19 1 1 A GAO 10 1_555 B C 1 1_555 -0.122 -0.170 0.210 -11.002 -10.618 -0.912 10 A_GAO10:C11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GAO 1 1_555 B C 10 1_555 A CAR 2 1_555 B G 9 1_555 0.359 -1.561 3.533 -1.713 5.475 33.890 -3.533 -0.886 3.227 9.310 2.912 34.358 1 AA_GAO1CAR2:G19C20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A CAR 2 1_555 B G 9 1_555 A UAR 3 1_555 B A 8 1_555 -0.852 -1.746 3.530 -2.310 6.509 31.327 -4.375 1.112 3.165 11.874 4.214 32.061 2 AA_CAR2UAR3:A18G19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A UAR 3 1_555 B A 8 1_555 A A5O 4 1_555 B U 7 1_555 0.062 -1.159 3.150 0.933 7.375 29.247 -3.611 0.057 2.782 14.316 -1.811 30.157 3 AA_UAR3A5O4:U17A18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A A5O 4 1_555 B U 7 1_555 A UAR 5 1_555 B A 6 1_555 -0.135 -1.302 3.146 -5.507 -1.938 36.309 -1.806 -0.519 3.194 -3.086 8.767 36.759 4 AA_A5O4UAR5:A16U17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A UAR 5 1_555 B A 6 1_555 A A5O 6 1_555 B U 5 1_555 -0.375 -1.116 3.158 0.754 1.245 34.606 -2.057 0.740 3.108 2.092 -1.266 34.636 5 AA_UAR5A5O6:U15A16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A A5O 6 1_555 B U 5 1_555 A A5O 7 1_555 B U 4 1_555 0.008 -1.052 3.025 -0.840 -3.775 34.039 -1.227 -0.139 3.119 -6.424 1.429 34.251 6 AA_A5O6A5O7:U14U15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A A5O 7 1_555 B U 4 1_555 A UAR 8 1_555 B A 3 1_555 0.161 -1.583 3.288 -4.795 -2.580 28.334 -2.590 -1.417 3.343 -5.209 9.683 28.842 7 AA_A5O7UAR8:A13U14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A UAR 8 1_555 B A 3 1_555 A GAO 9 1_555 B C 2 1_555 0.344 -1.358 3.266 -1.697 6.392 33.748 -3.255 -0.836 2.947 10.881 2.889 34.371 8 AA_UAR8GAO9:C12A13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A GAO 9 1_555 B C 2 1_555 A GAO 10 1_555 B C 1 1_555 -0.270 -1.364 3.314 -1.691 3.180 37.762 -2.505 0.200 3.202 4.900 2.606 37.927 9 AA_GAO9GAO10:C11C12_BB A 9 ? B 12 ? A 10 ? B 11 ? #