data_2KP4 # _entry.id 2KP4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KP4 pdb_00002kp4 10.2210/pdb2kp4/pdb RCSB RCSB101397 ? ? WWPDB D_1000101397 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KP4 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gonzalez, C.' 1 'Martin-Pintado, N.' 2 'Watts, J.' 3 'Gomez-Pinto, I.' 4 'Dhama, M.' 5 'Orozco, M.' 6 'Schwartzentruber, J.' 7 'Portella, G.' 8 # _citation.id primary _citation.title ;Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 38 _citation.page_first 2498 _citation.page_last 2511 _citation.year 2010 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20071751 _citation.pdbx_database_id_DOI 10.1093/nar/gkp1225 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Watts, J.K.' 1 ? primary 'Martin-Pintado, N.' 2 ? primary 'Gomez-Pinto, I.' 3 ? primary 'Schwartzentruber, J.' 4 ? primary 'Portella, G.' 5 ? primary 'Orozco, M.' 6 ? primary 'Gonzalez, C.' 7 ? primary 'Damha, M.J.' 8 ? # _cell.entry_id 2KP4 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KP4 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(GFL)P*(CFL)P*(TAF)P*(A5L)P*(TAF)P*(A5L)P*(A5L)P*(TAF)P*(GFL)P*(GFL))-3') ; 3263.947 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3') ; 3121.908 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(GFL)(CFL)(TAF)(A5L)(TAF)(A5L)(A5L)(TAF)(GFL)(GFL)' GCTATAATGG A ? 2 polyribonucleotide no no CCAUUAUAGC CCAUUAUAGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GFL n 1 2 CFL n 1 3 TAF n 1 4 A5L n 1 5 TAF n 1 6 A5L n 1 7 A5L n 1 8 TAF n 1 9 GFL n 1 10 GFL n 2 1 C n 2 2 C n 2 3 A n 2 4 U n 2 5 U n 2 6 A n 2 7 U n 2 8 A n 2 9 G n 2 10 C n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2KP4 2KP4 1 ? ? ? 2 PDB 2KP4 2KP4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KP4 A 1 ? 10 ? 2KP4 1 ? 10 ? 1 10 2 2 2KP4 B 1 ? 10 ? 2KP4 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A5L 'DNA linking' n '9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-9H-purin-6-amine' ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL ADENINE-5'-PHOSPHATE ; 'C10 H13 F N5 O6 P' 349.212 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GFL 'DNA linking' n '2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE' "2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H13 F N5 O7 P' 365.212 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.8 mM FANA/RNA-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Advance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Advance' # _pdbx_nmr_refine.entry_id 2KP4 _pdbx_nmr_refine.method 'molecular dynamics, matrix relaxation' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KP4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KP4 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber ? 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'peak picking' Amber ? 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' Amber ? 3 Goddard refinement Amber ? 4 Goddard 'peak picking' Amber ? 5 Goddard 'structure solution' Amber ? 6 'Koradi, Billeter and Wuthrich' refinement Amber ? 7 'Koradi, Billeter and Wuthrich' 'peak picking' Amber ? 8 'Koradi, Billeter and Wuthrich' 'structure solution' Amber ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KP4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KP4 _struct.title ;Structure of 2'F-ANA/RNA hybrid duplex ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KP4 _struct_keywords.pdbx_keywords DNA/RNA _struct_keywords.text '2-deoxy-2-fluoro-D-arabinose, FANA, nucleic acid structure, NMR/MD/TI, hybrid duplex, DNA-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A GFL 1 "O3'" ? ? ? 1_555 A CFL 2 P ? ? A GFL 1 A CFL 2 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale2 covale one ? A CFL 2 "O3'" ? ? ? 1_555 A TAF 3 P ? ? A CFL 2 A TAF 3 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale3 covale one ? A TAF 3 "O3'" ? ? ? 1_555 A A5L 4 P ? ? A TAF 3 A A5L 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale one ? A A5L 4 "O3'" ? ? ? 1_555 A TAF 5 P ? ? A A5L 4 A TAF 5 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale5 covale one ? A TAF 5 "O3'" ? ? ? 1_555 A A5L 6 P ? ? A TAF 5 A A5L 6 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale6 covale one ? A A5L 6 "O3'" ? ? ? 1_555 A A5L 7 P ? ? A A5L 6 A A5L 7 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale7 covale one ? A A5L 7 "O3'" ? ? ? 1_555 A TAF 8 P ? ? A A5L 7 A TAF 8 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale8 covale one ? A TAF 8 "O3'" ? ? ? 1_555 A GFL 9 P ? ? A TAF 8 A GFL 9 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale9 covale one ? A GFL 9 "O3'" ? ? ? 1_555 A GFL 10 P ? ? A GFL 9 A GFL 10 1_555 ? ? ? ? ? ? ? 1.622 ? ? hydrog1 hydrog ? ? A GFL 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A GFL 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GFL 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A GFL 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GFL 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A GFL 1 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CFL 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A CFL 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CFL 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A CFL 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CFL 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A CFL 2 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A TAF 3 N3 ? ? ? 1_555 B A 8 N1 ? ? A TAF 3 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A TAF 3 O4 ? ? ? 1_555 B A 8 N6 ? ? A TAF 3 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A5L 4 N1 ? ? ? 1_555 B U 7 N3 ? ? A A5L 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A5L 4 N6 ? ? ? 1_555 B U 7 O4 ? ? A A5L 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A TAF 5 N3 ? ? ? 1_555 B A 6 N1 ? ? A TAF 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A TAF 5 O4 ? ? ? 1_555 B A 6 N6 ? ? A TAF 5 B A 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A5L 6 N1 ? ? ? 1_555 B U 5 N3 ? ? A A5L 6 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A5L 6 N6 ? ? ? 1_555 B U 5 O4 ? ? A A5L 6 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A5L 7 N1 ? ? ? 1_555 B U 4 N3 ? ? A A5L 7 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A5L 7 N6 ? ? ? 1_555 B U 4 O4 ? ? A A5L 7 B U 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TAF 8 N3 ? ? ? 1_555 B A 3 N1 ? ? A TAF 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TAF 8 O4 ? ? ? 1_555 B A 3 N6 ? ? A TAF 8 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A GFL 9 N1 ? ? ? 1_555 B C 2 N3 ? ? A GFL 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A GFL 9 N2 ? ? ? 1_555 B C 2 O2 ? ? A GFL 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A GFL 9 O6 ? ? ? 1_555 B C 2 N4 ? ? A GFL 9 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A GFL 10 N1 ? ? ? 1_555 B C 1 N3 ? ? A GFL 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A GFL 10 N2 ? ? ? 1_555 B C 1 O2 ? ? A GFL 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A GFL 10 O6 ? ? ? 1_555 B C 1 N4 ? ? A GFL 10 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2KP4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GFL 1 1 1 GFL GFL A . n A 1 2 CFL 2 2 2 CFL CFL A . n A 1 3 TAF 3 3 3 TAF TAF A . n A 1 4 A5L 4 4 4 A5L A5L A . n A 1 5 TAF 5 5 5 TAF TAF A . n A 1 6 A5L 6 6 6 A5L A5L A . n A 1 7 A5L 7 7 7 A5L A5L A . n A 1 8 TAF 8 8 8 TAF TAF A . n A 1 9 GFL 9 9 9 GFL GFL A . n A 1 10 GFL 10 10 10 GFL GFL A . n B 2 1 C 1 11 11 C C B . n B 2 2 C 2 12 12 C C B . n B 2 3 A 3 13 13 A A B . n B 2 4 U 4 14 14 U U B . n B 2 5 U 5 15 15 U U B . n B 2 6 A 6 16 16 A A B . n B 2 7 U 7 17 17 U U B . n B 2 8 A 8 18 18 A A B . n B 2 9 G 9 19 19 G G B . n B 2 10 C 10 20 20 C C B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GFL 1 A GFL 1 ? DG ? 2 A CFL 2 A CFL 2 ? DC ? 3 A TAF 3 A TAF 3 ? DT ? 4 A A5L 4 A A5L 4 ? DA ? 5 A TAF 5 A TAF 5 ? DT ? 6 A A5L 6 A A5L 6 ? DA ? 7 A A5L 7 A A5L 7 ? DA ? 8 A TAF 8 A TAF 8 ? DT ? 9 A GFL 9 A GFL 9 ? DG ? 10 A GFL 10 A GFL 10 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_nmr_exptl_sample.component FANA/RNA-1 _pdbx_nmr_exptl_sample.concentration 0.8 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 "HO2'" B U 14 ? ? "O5'" B U 15 ? ? 1.48 2 6 "HO2'" B U 14 ? ? "O5'" B U 15 ? ? 1.48 3 7 "HO2'" B U 14 ? ? "O5'" B U 15 ? ? 1.48 4 9 "HO2'" B U 14 ? ? "O5'" B U 15 ? ? 1.51 5 10 "HO2'" B U 14 ? ? "O5'" B U 15 ? ? 1.48 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.03 108.50 5.53 0.70 N 2 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.15 108.50 4.65 0.70 N 3 1 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.22 108.50 4.72 0.70 N 4 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.31 118.60 -4.29 0.60 N 5 1 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.39 108.50 4.89 0.70 N 6 1 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.22 108.50 5.72 0.70 N 7 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.48 118.60 -5.12 0.60 N 8 1 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.39 108.50 4.89 0.70 N 9 1 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 114.32 108.50 5.82 0.70 N 10 1 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.82 118.60 -3.78 0.60 N 11 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 114.05 108.50 5.55 0.70 N 12 2 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.79 108.50 6.29 0.70 N 13 2 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.87 118.60 -4.73 0.60 N 14 2 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.03 108.50 5.53 0.70 N 15 2 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 115.26 108.50 6.76 0.70 N 16 2 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.66 118.60 -4.94 0.60 N 17 2 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.37 108.50 4.87 0.70 N 18 2 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.39 108.50 4.89 0.70 N 19 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.39 108.50 4.89 0.70 N 20 3 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.85 108.50 5.35 0.70 N 21 3 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.79 118.60 -4.81 0.60 N 22 3 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 113.42 108.50 4.92 0.70 N 23 3 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.27 108.50 5.77 0.70 N 24 3 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.70 118.60 -4.90 0.60 N 25 3 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 112.88 108.50 4.38 0.70 N 26 4 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 114.80 108.50 6.30 0.70 N 27 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.10 108.50 4.60 0.70 N 28 4 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.81 108.50 5.31 0.70 N 29 4 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.89 117.00 -3.11 0.50 N 30 4 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.20 118.60 -5.40 0.60 N 31 4 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 119.47 108.50 10.97 0.70 N 32 4 "O4'" B A 16 ? ? "C1'" B A 16 ? ? N9 B A 16 ? ? 113.45 108.50 4.95 0.70 N 33 4 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.45 118.60 -5.15 0.60 N 34 4 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.02 108.50 4.52 0.70 N 35 4 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.73 117.70 3.03 0.50 N 36 5 "C3'" A GFL 9 ? ? "O3'" A GFL 9 ? ? P A GFL 10 ? ? 127.23 119.70 7.53 1.20 Y 37 5 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.42 108.50 4.92 0.70 N 38 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 114.00 108.50 5.50 0.70 N 39 5 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.22 108.50 5.72 0.70 N 40 5 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.63 118.60 -4.97 0.60 N 41 5 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 112.99 108.50 4.49 0.70 N 42 5 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 114.03 108.50 5.53 0.70 N 43 5 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.54 118.60 -5.06 0.60 N 44 5 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.14 108.50 4.64 0.70 N 45 5 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.79 118.60 -3.81 0.60 N 46 6 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.91 108.50 4.41 0.70 N 47 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.12 108.50 4.62 0.70 N 48 6 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.05 108.50 4.55 0.70 N 49 6 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.79 117.00 -3.21 0.50 N 50 6 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.57 118.60 -5.03 0.60 N 51 6 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 119.24 108.50 10.74 0.70 N 52 6 "O4'" B A 16 ? ? "C1'" B A 16 ? ? N9 B A 16 ? ? 114.24 108.50 5.74 0.70 N 53 6 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.88 117.00 -3.12 0.50 N 54 6 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.32 118.60 -5.28 0.60 N 55 6 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.94 108.50 5.44 0.70 N 56 6 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.56 108.50 5.06 0.70 N 57 7 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.81 108.50 5.31 0.70 N 58 7 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.79 117.00 -3.21 0.50 N 59 7 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.36 118.60 -5.24 0.60 N 60 7 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 119.52 108.50 11.02 0.70 N 61 7 "O4'" B A 16 ? ? "C1'" B A 16 ? ? N9 B A 16 ? ? 113.66 108.50 5.16 0.70 N 62 7 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.69 118.60 -4.91 0.60 N 63 7 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.31 108.50 4.81 0.70 N 64 7 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.88 118.60 -3.72 0.60 N 65 7 "O4'" B G 19 ? ? "C1'" B G 19 ? ? N9 B G 19 ? ? 113.64 108.50 5.14 0.70 N 66 8 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.76 108.50 4.26 0.70 N 67 8 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.14 108.50 5.64 0.70 N 68 8 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.20 118.60 -4.40 0.60 N 69 8 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 114.11 108.50 5.61 0.70 N 70 8 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 115.02 108.50 6.52 0.70 N 71 8 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.75 118.60 -4.85 0.60 N 72 8 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 120.82 117.70 3.12 0.50 N 73 8 "O4'" B G 19 ? ? "C1'" B G 19 ? ? N9 B G 19 ? ? 113.32 108.50 4.82 0.70 N 74 9 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.49 108.50 4.99 0.70 N 75 9 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 114.28 108.50 5.78 0.70 N 76 9 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.87 117.00 -3.13 0.50 N 77 9 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.26 118.60 -5.34 0.60 N 78 9 "C3'" B U 14 ? ? "O3'" B U 14 ? ? P B U 15 ? ? 127.53 119.70 7.83 1.20 Y 79 9 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 118.33 108.50 9.83 0.70 N 80 9 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.81 117.00 -3.19 0.50 N 81 9 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.09 118.60 -5.51 0.60 N 82 9 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.48 108.50 4.98 0.70 N 83 9 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.27 108.50 4.77 0.70 N 84 9 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 114.41 118.60 -4.19 0.60 N 85 10 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.71 108.50 4.21 0.70 N 86 10 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.66 117.00 -3.34 0.50 N 87 10 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.33 118.60 -5.27 0.60 N 88 10 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 119.91 108.50 11.41 0.70 N 89 10 "O4'" B A 16 ? ? "C1'" B A 16 ? ? N9 B A 16 ? ? 113.77 108.50 5.27 0.70 N 90 10 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.81 117.00 -3.19 0.50 N 91 10 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.29 118.60 -5.31 0.60 N 92 10 "O4'" B U 17 ? ? "C1'" B U 17 ? ? N1 B U 17 ? ? 113.21 108.50 4.71 0.70 N 93 10 "O4'" B A 18 ? ? "C1'" B A 18 ? ? N9 B A 18 ? ? 113.09 108.50 4.59 0.70 N 94 10 "O4'" B G 19 ? ? "C1'" B G 19 ? ? N9 B G 19 ? ? 113.24 108.50 4.74 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 A B 18 ? ? 0.062 'SIDE CHAIN' 2 2 G B 19 ? ? 0.063 'SIDE CHAIN' 3 3 G B 19 ? ? 0.053 'SIDE CHAIN' 4 4 U B 14 ? ? 0.064 'SIDE CHAIN' 5 4 A B 16 ? ? 0.075 'SIDE CHAIN' 6 5 U B 14 ? ? 0.073 'SIDE CHAIN' 7 5 G B 19 ? ? 0.054 'SIDE CHAIN' 8 6 C B 12 ? ? 0.086 'SIDE CHAIN' 9 6 U B 14 ? ? 0.065 'SIDE CHAIN' 10 6 A B 16 ? ? 0.064 'SIDE CHAIN' 11 6 G B 19 ? ? 0.051 'SIDE CHAIN' 12 7 U B 14 ? ? 0.072 'SIDE CHAIN' 13 8 A B 16 ? ? 0.080 'SIDE CHAIN' 14 9 U B 14 ? ? 0.082 'SIDE CHAIN' 15 9 A B 16 ? ? 0.058 'SIDE CHAIN' 16 9 U B 17 ? ? 0.070 'SIDE CHAIN' 17 9 G B 19 ? ? 0.073 'SIDE CHAIN' 18 10 A B 16 ? ? 0.066 'SIDE CHAIN' 19 10 G B 19 ? ? 0.054 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 2KP4 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GFL 1 1_555 B C 10 1_555 -0.273 -0.177 -0.084 3.029 0.129 -1.386 1 A_GFL1:C20_B A 1 ? B 20 ? 19 1 1 A CFL 2 1_555 B G 9 1_555 0.163 -0.160 0.533 -6.679 -1.423 0.692 2 A_CFL2:G19_B A 2 ? B 19 ? 19 1 1 A TAF 3 1_555 B A 8 1_555 -0.031 -0.004 -0.008 17.515 -7.047 -3.571 3 A_TAF3:A18_B A 3 ? B 18 ? 20 1 1 A A5L 4 1_555 B U 7 1_555 0.269 -0.104 -0.040 14.599 -18.466 -0.020 4 A_A5L4:U17_B A 4 ? B 17 ? 20 1 1 A TAF 5 1_555 B A 6 1_555 -0.115 -0.051 -0.028 12.328 -23.473 5.373 5 A_TAF5:A16_B A 5 ? B 16 ? 20 1 1 A A5L 6 1_555 B U 5 1_555 -0.008 -0.094 -0.093 -6.613 -8.347 2.853 6 A_A5L6:U15_B A 6 ? B 15 ? 20 1 1 A A5L 7 1_555 B U 4 1_555 0.269 -0.093 -0.280 5.626 -14.101 -0.974 7 A_A5L7:U14_B A 7 ? B 14 ? 20 1 1 A TAF 8 1_555 B A 3 1_555 -0.187 -0.113 -0.220 8.179 -17.605 3.162 8 A_TAF8:A13_B A 8 ? B 13 ? 20 1 1 A GFL 9 1_555 B C 2 1_555 -0.003 -0.111 0.108 4.086 -9.809 -0.077 9 A_GFL9:C12_B A 9 ? B 12 ? 19 1 1 A GFL 10 1_555 B C 1 1_555 -0.623 -0.251 -0.351 -15.376 -23.325 3.112 10 A_GFL10:C11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GFL 1 1_555 B C 10 1_555 A CFL 2 1_555 B G 9 1_555 -0.219 -1.409 3.609 -6.698 7.162 29.582 -4.080 -0.952 3.163 13.565 12.687 31.131 1 AA_GFL1CFL2:G19C20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A CFL 2 1_555 B G 9 1_555 A TAF 3 1_555 B A 8 1_555 0.091 -1.012 2.873 1.669 -5.644 29.958 -0.904 0.128 3.010 -10.788 -3.190 30.517 2 AA_CFL2TAF3:A18G19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A TAF 3 1_555 B A 8 1_555 A A5L 4 1_555 B U 7 1_555 -0.251 -1.407 3.237 -2.326 9.822 29.092 -4.433 0.052 2.645 18.852 4.465 30.758 3 AA_TAF3A5L4:U17A18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A A5L 4 1_555 B U 7 1_555 A TAF 5 1_555 B A 6 1_555 0.984 -1.628 3.276 -2.866 -1.828 30.462 -2.719 -2.427 3.262 -3.466 5.433 30.647 4 AA_A5L4TAF5:A16U17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A TAF 5 1_555 B A 6 1_555 A A5L 6 1_555 B U 5 1_555 -0.363 -1.811 3.528 -2.544 17.944 29.660 -5.631 0.242 2.141 31.612 4.481 34.653 5 AA_TAF5A5L6:U15A16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A A5L 6 1_555 B U 5 1_555 A A5L 7 1_555 B U 4 1_555 -0.491 -1.274 3.097 0.170 -0.752 28.846 -2.398 1.021 3.125 -1.508 -0.341 28.856 6 AA_A5L6A5L7:U14U15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A A5L 7 1_555 B U 4 1_555 A TAF 8 1_555 B A 3 1_555 0.755 -1.418 3.206 -2.164 0.414 28.674 -2.945 -1.989 3.122 0.834 4.361 28.757 7 AA_A5L7TAF8:A13U14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A TAF 8 1_555 B A 3 1_555 A GFL 9 1_555 B C 2 1_555 -0.413 -1.428 3.462 -4.195 13.657 26.515 -5.468 -0.037 2.481 27.393 8.414 30.058 8 AA_TAF8GFL9:C12A13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A GFL 9 1_555 B C 2 1_555 A GFL 10 1_555 B C 1 1_555 -0.183 -1.764 3.740 2.002 9.262 33.434 -4.478 0.636 3.139 15.711 -3.396 34.714 9 AA_GFL9GFL10:C11C12_BB A 9 ? B 12 ? A 10 ? B 11 ? #