data_2KP8 # _entry.id 2KP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KP8 pdb_00002kp8 10.2210/pdb2kp8/pdb RCSB RCSB101401 ? ? WWPDB D_1000101401 ? ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KP8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Olejniczak, E.T.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Non-peptide entry inhibitors of HIV-1 that target the gp41 coiled coil pocket.' _citation.journal_abbrev Bioorg.Med.Chem.Lett. _citation.journal_volume 20 _citation.page_first 612 _citation.page_last 617 _citation.year 2010 _citation.journal_id_ASTM BMCLE8 _citation.country UK _citation.journal_id_ISSN 1464-3405 _citation.journal_id_CSD 1127 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20004576 _citation.pdbx_database_id_DOI 10.1016/j.bmcl.2009.11.076 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stewart, K.D.' 1 ? primary 'Huth, J.R.' 2 ? primary 'Ng, T.I.' 3 ? primary 'McDaniel, K.' 4 ? primary 'Hutchinson, R.N.' 5 ? primary 'Stoll, V.S.' 6 ? primary 'Mendoza, R.R.' 7 ? primary 'Matayoshi, E.D.' 8 ? primary 'Carrick, R.' 9 ? primary 'Mo, H.' 10 ? primary 'Severin, J.' 11 ? primary 'Walter, K.' 12 ? primary 'Richardson, P.L.' 13 ? primary 'Barrett, L.W.' 14 ? primary 'Meadows, R.' 15 ? primary 'Anderson, S.' 16 ? primary 'Kohlbrenner, W.' 17 ? primary 'Maring, C.' 18 ? primary 'Kempf, D.J.' 19 ? primary 'Molla, A.' 20 ? primary 'Olejniczak, E.T.' 21 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Model peptide' 8159.135 3 ? ? ? ? 2 non-polymer syn ;5-{[(4'-methoxybiphenyl-4-yl)methyl][(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}benzene-1,2,4-tricarboxylic acid ; 579.596 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TSLIHSLIEESQNQQEKNEQELLELDGDGPQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVE _entity_poly.pdbx_seq_one_letter_code_can TSLIHSLIEESQNQQEKNEQELLELDGDGPQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVE _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 LEU n 1 4 ILE n 1 5 HIS n 1 6 SER n 1 7 LEU n 1 8 ILE n 1 9 GLU n 1 10 GLU n 1 11 SER n 1 12 GLN n 1 13 ASN n 1 14 GLN n 1 15 GLN n 1 16 GLU n 1 17 LYS n 1 18 ASN n 1 19 GLU n 1 20 GLN n 1 21 GLU n 1 22 LEU n 1 23 LEU n 1 24 GLU n 1 25 LEU n 1 26 ASP n 1 27 GLY n 1 28 ASP n 1 29 GLY n 1 30 PRO n 1 31 GLN n 1 32 LEU n 1 33 LEU n 1 34 SER n 1 35 GLY n 1 36 ILE n 1 37 VAL n 1 38 GLN n 1 39 GLN n 1 40 GLN n 1 41 ASN n 1 42 ASN n 1 43 LEU n 1 44 LEU n 1 45 ARG n 1 46 ALA n 1 47 ILE n 1 48 GLU n 1 49 ALA n 1 50 GLN n 1 51 GLN n 1 52 HIS n 1 53 LEU n 1 54 LEU n 1 55 GLN n 1 56 LEU n 1 57 THR n 1 58 VAL n 1 59 TRP n 1 60 GLY n 1 61 ILE n 1 62 LYS n 1 63 GLN n 1 64 LEU n 1 65 GLN n 1 66 ALA n 1 67 ARG n 1 68 ILE n 1 69 LEU n 1 70 ALA n 1 71 VAL n 1 72 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KP8 _struct_ref.pdbx_db_accession 2KP8 _struct_ref.entity_id 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KP8 A 1 ? 72 ? 2KP8 1 ? 72 ? 1 72 2 1 2KP8 B 1 ? 72 ? 2KP8 101 ? 172 ? 101 172 3 1 2KP8 C 1 ? 72 ? 2KP8 201 ? 272 ? 201 272 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XIG non-polymer . ;5-{[(4'-methoxybiphenyl-4-yl)methyl][(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}benzene-1,2,4-tricarboxylic acid ; ? 'C34 H29 N O8' 579.596 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HBHA(CO)NH' 1 6 1 '3D HCCH-TOCSY' 1 7 1 '3D 1H-15N NOESY' 1 8 1 '3D 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 25 _pdbx_nmr_exptl_sample_conditions.pH 8.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-100% 13C; U-100% 15N] peptide, 6 mM 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-15N]-vlI methyl13C peptide, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker DRX 1 'Bruker DRX' 600 Bruker DRX 2 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2KP8 _pdbx_nmr_refine.method 'simulated annealing, Final minimization step' _pdbx_nmr_refine.details 'using xplor, using schrodinger' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2KP8 _pdbx_nmr_details.text 'edited filtered Noesy experiments' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KP8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KP8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, A.T. et al.' 'geometry optimization' X-PLOR ? 1 'Brunger, A.T. et al.' refinement X-PLOR ? 2 'Cornilescu, G. et al.' 'data analysis' TALOS ? 3 Schrodinger 'geometry optimization' Schrodinger ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KP8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KP8 _struct.title 'Ligand bound to a model peptide that mimics the open fusogenic form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KP8 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'protein/ligand, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 3 ? LEU A 25 ? LEU A 3 LEU A 25 1 ? 23 HELX_P HELX_P2 2 LEU A 32 ? LEU A 69 ? LEU A 32 LEU A 69 1 ? 38 HELX_P HELX_P3 3 THR B 1 ? LEU B 23 ? THR B 101 LEU B 123 1 ? 23 HELX_P HELX_P4 4 LEU B 32 ? LEU B 69 ? LEU B 132 LEU B 169 1 ? 38 HELX_P HELX_P5 5 THR C 1 ? LEU C 25 ? THR C 201 LEU C 225 1 ? 25 HELX_P HELX_P6 6 LEU C 32 ? ILE C 68 ? LEU C 232 ILE C 268 1 ? 37 HELX_P HELX_P7 7 LEU C 69 ? VAL C 71 ? LEU C 269 VAL C 271 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id XIG _struct_site.pdbx_auth_seq_id 999 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE XIG B 999' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 56 ? LEU A 56 . ? 1_555 ? 2 AC1 10 LEU A 64 ? LEU A 64 . ? 1_555 ? 3 AC1 10 ARG A 67 ? ARG A 67 . ? 1_555 ? 4 AC1 10 THR B 1 ? THR B 101 . ? 1_555 ? 5 AC1 10 SER B 2 ? SER B 102 . ? 1_555 ? 6 AC1 10 LEU B 3 ? LEU B 103 . ? 1_555 ? 7 AC1 10 VAL B 58 ? VAL B 158 . ? 1_555 ? 8 AC1 10 TRP B 59 ? TRP B 159 . ? 1_555 ? 9 AC1 10 LYS B 62 ? LYS B 162 . ? 1_555 ? 10 AC1 10 GLN B 65 ? GLN B 165 . ? 1_555 ? # _atom_sites.entry_id 2KP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n B 1 1 THR 1 101 101 THR THR B . n B 1 2 SER 2 102 102 SER SER B . n B 1 3 LEU 3 103 103 LEU LEU B . n B 1 4 ILE 4 104 104 ILE ILE B . n B 1 5 HIS 5 105 105 HIS HIS B . n B 1 6 SER 6 106 106 SER SER B . n B 1 7 LEU 7 107 107 LEU LEU B . n B 1 8 ILE 8 108 108 ILE ILE B . n B 1 9 GLU 9 109 109 GLU GLU B . n B 1 10 GLU 10 110 110 GLU GLU B . n B 1 11 SER 11 111 111 SER SER B . n B 1 12 GLN 12 112 112 GLN GLN B . n B 1 13 ASN 13 113 113 ASN ASN B . n B 1 14 GLN 14 114 114 GLN GLN B . n B 1 15 GLN 15 115 115 GLN GLN B . n B 1 16 GLU 16 116 116 GLU GLU B . n B 1 17 LYS 17 117 117 LYS LYS B . n B 1 18 ASN 18 118 118 ASN ASN B . n B 1 19 GLU 19 119 119 GLU GLU B . n B 1 20 GLN 20 120 120 GLN GLN B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 LEU 22 122 122 LEU LEU B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 GLU 24 124 124 GLU GLU B . n B 1 25 LEU 25 125 125 LEU LEU B . n B 1 26 ASP 26 126 126 ASP ASP B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ASP 28 128 128 ASP ASP B . n B 1 29 GLY 29 129 129 GLY GLY B . n B 1 30 PRO 30 130 130 PRO PRO B . n B 1 31 GLN 31 131 131 GLN GLN B . n B 1 32 LEU 32 132 132 LEU LEU B . n B 1 33 LEU 33 133 133 LEU LEU B . n B 1 34 SER 34 134 134 SER SER B . n B 1 35 GLY 35 135 135 GLY GLY B . n B 1 36 ILE 36 136 136 ILE ILE B . n B 1 37 VAL 37 137 137 VAL VAL B . n B 1 38 GLN 38 138 138 GLN GLN B . n B 1 39 GLN 39 139 139 GLN GLN B . n B 1 40 GLN 40 140 140 GLN GLN B . n B 1 41 ASN 41 141 141 ASN ASN B . n B 1 42 ASN 42 142 142 ASN ASN B . n B 1 43 LEU 43 143 143 LEU LEU B . n B 1 44 LEU 44 144 144 LEU LEU B . n B 1 45 ARG 45 145 145 ARG ARG B . n B 1 46 ALA 46 146 146 ALA ALA B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLU 48 148 148 GLU GLU B . n B 1 49 ALA 49 149 149 ALA ALA B . n B 1 50 GLN 50 150 150 GLN GLN B . n B 1 51 GLN 51 151 151 GLN GLN B . n B 1 52 HIS 52 152 152 HIS HIS B . n B 1 53 LEU 53 153 153 LEU LEU B . n B 1 54 LEU 54 154 154 LEU LEU B . n B 1 55 GLN 55 155 155 GLN GLN B . n B 1 56 LEU 56 156 156 LEU LEU B . n B 1 57 THR 57 157 157 THR THR B . n B 1 58 VAL 58 158 158 VAL VAL B . n B 1 59 TRP 59 159 159 TRP TRP B . n B 1 60 GLY 60 160 160 GLY GLY B . n B 1 61 ILE 61 161 161 ILE ILE B . n B 1 62 LYS 62 162 162 LYS LYS B . n B 1 63 GLN 63 163 163 GLN GLN B . n B 1 64 LEU 64 164 164 LEU LEU B . n B 1 65 GLN 65 165 165 GLN GLN B . n B 1 66 ALA 66 166 166 ALA ALA B . n B 1 67 ARG 67 167 167 ARG ARG B . n B 1 68 ILE 68 168 168 ILE ILE B . n B 1 69 LEU 69 169 169 LEU LEU B . n B 1 70 ALA 70 170 170 ALA ALA B . n B 1 71 VAL 71 171 171 VAL VAL B . n B 1 72 GLU 72 172 172 GLU GLU B . n C 1 1 THR 1 201 201 THR THR C . n C 1 2 SER 2 202 202 SER SER C . n C 1 3 LEU 3 203 203 LEU LEU C . n C 1 4 ILE 4 204 204 ILE ILE C . n C 1 5 HIS 5 205 205 HIS HIS C . n C 1 6 SER 6 206 206 SER SER C . n C 1 7 LEU 7 207 207 LEU LEU C . n C 1 8 ILE 8 208 208 ILE ILE C . n C 1 9 GLU 9 209 209 GLU GLU C . n C 1 10 GLU 10 210 210 GLU GLU C . n C 1 11 SER 11 211 211 SER SER C . n C 1 12 GLN 12 212 212 GLN GLN C . n C 1 13 ASN 13 213 213 ASN ASN C . n C 1 14 GLN 14 214 214 GLN GLN C . n C 1 15 GLN 15 215 215 GLN GLN C . n C 1 16 GLU 16 216 216 GLU GLU C . n C 1 17 LYS 17 217 217 LYS LYS C . n C 1 18 ASN 18 218 218 ASN ASN C . n C 1 19 GLU 19 219 219 GLU GLU C . n C 1 20 GLN 20 220 220 GLN GLN C . n C 1 21 GLU 21 221 221 GLU GLU C . n C 1 22 LEU 22 222 222 LEU LEU C . n C 1 23 LEU 23 223 223 LEU LEU C . n C 1 24 GLU 24 224 224 GLU GLU C . n C 1 25 LEU 25 225 225 LEU LEU C . n C 1 26 ASP 26 226 226 ASP ASP C . n C 1 27 GLY 27 227 227 GLY GLY C . n C 1 28 ASP 28 228 228 ASP ASP C . n C 1 29 GLY 29 229 229 GLY GLY C . n C 1 30 PRO 30 230 230 PRO PRO C . n C 1 31 GLN 31 231 231 GLN GLN C . n C 1 32 LEU 32 232 232 LEU LEU C . n C 1 33 LEU 33 233 233 LEU LEU C . n C 1 34 SER 34 234 234 SER SER C . n C 1 35 GLY 35 235 235 GLY GLY C . n C 1 36 ILE 36 236 236 ILE ILE C . n C 1 37 VAL 37 237 237 VAL VAL C . n C 1 38 GLN 38 238 238 GLN GLN C . n C 1 39 GLN 39 239 239 GLN GLN C . n C 1 40 GLN 40 240 240 GLN GLN C . n C 1 41 ASN 41 241 241 ASN ASN C . n C 1 42 ASN 42 242 242 ASN ASN C . n C 1 43 LEU 43 243 243 LEU LEU C . n C 1 44 LEU 44 244 244 LEU LEU C . n C 1 45 ARG 45 245 245 ARG ARG C . n C 1 46 ALA 46 246 246 ALA ALA C . n C 1 47 ILE 47 247 247 ILE ILE C . n C 1 48 GLU 48 248 248 GLU GLU C . n C 1 49 ALA 49 249 249 ALA ALA C . n C 1 50 GLN 50 250 250 GLN GLN C . n C 1 51 GLN 51 251 251 GLN GLN C . n C 1 52 HIS 52 252 252 HIS HIS C . n C 1 53 LEU 53 253 253 LEU LEU C . n C 1 54 LEU 54 254 254 LEU LEU C . n C 1 55 GLN 55 255 255 GLN GLN C . n C 1 56 LEU 56 256 256 LEU LEU C . n C 1 57 THR 57 257 257 THR THR C . n C 1 58 VAL 58 258 258 VAL VAL C . n C 1 59 TRP 59 259 259 TRP TRP C . n C 1 60 GLY 60 260 260 GLY GLY C . n C 1 61 ILE 61 261 261 ILE ILE C . n C 1 62 LYS 62 262 262 LYS LYS C . n C 1 63 GLN 63 263 263 GLN GLN C . n C 1 64 LEU 64 264 264 LEU LEU C . n C 1 65 GLN 65 265 265 GLN GLN C . n C 1 66 ALA 66 266 266 ALA ALA C . n C 1 67 ARG 67 267 267 ARG ARG C . n C 1 68 ILE 68 268 268 ILE ILE C . n C 1 69 LEU 69 269 269 LEU LEU C . n C 1 70 ALA 70 270 270 ALA ALA C . n C 1 71 VAL 71 271 271 VAL VAL C . n C 1 72 GLU 72 272 272 GLU GLU C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id XIG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id XIG _pdbx_nonpoly_scheme.auth_mon_id XIG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2023-07-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list 4 3 'Structure model' struct_site 5 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 6 4 'Structure model' '_citation.journal_volume' 7 4 'Structure model' '_citation.page_first' 8 4 'Structure model' '_citation.page_last' 9 4 'Structure model' '_citation.year' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id peptide 1 ? mM '[U-100% 13C; U-100% 15N]' 1 '3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE' 6 ? mM ? 1 peptide 1 ? mM '[U-15N]-vlI methyl13C' 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HH21 A ARG 67 ? ? OE1 B GLU 172 ? ? 1.55 2 2 OE1 A GLU 72 ? ? HH11 C ARG 267 ? ? 1.57 3 2 HH12 A ARG 45 ? ? OE2 B GLU 110 ? ? 1.57 4 2 HZ1 B LYS 162 ? ? O31 B XIG 999 ? ? 1.59 5 2 HZ2 B LYS 117 ? ? OE1 B GLU 121 ? ? 1.59 6 4 HH21 A ARG 67 ? ? OE1 B GLU 172 ? ? 1.53 7 4 HH12 A ARG 45 ? ? OE2 B GLU 110 ? ? 1.56 8 4 HZ3 C LYS 217 ? ? OE2 C GLU 221 ? ? 1.58 9 4 HZ2 B LYS 117 ? ? OE1 B GLU 121 ? ? 1.59 10 5 HH21 C ARG 245 ? ? OE1 C GLU 248 ? ? 1.52 11 5 HH11 B ARG 167 ? ? OE2 C GLU 272 ? ? 1.57 12 5 OE2 A GLU 72 ? ? HE C ARG 267 ? ? 1.58 13 5 OE1 A GLU 72 ? ? HH21 C ARG 267 ? ? 1.59 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD C GLU 272 ? ? OE1 C GLU 272 ? ? 1.359 1.252 0.107 0.011 N 2 4 CD C GLU 272 ? ? OE1 C GLU 272 ? ? 1.359 1.252 0.107 0.011 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 2 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 245 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 245 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 245 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.62 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.68 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 56.41 -137.54 2 1 LEU A 3 ? ? -91.48 -62.27 3 1 LEU A 25 ? ? -99.33 51.04 4 1 VAL A 71 ? ? -130.01 -33.85 5 1 ASP B 126 ? ? -65.04 63.80 6 1 LEU B 154 ? ? -85.03 48.61 7 1 GLN B 155 ? ? -147.11 -46.29 8 1 ASP C 226 ? ? -62.10 87.46 9 1 GLN C 231 ? ? 70.76 -60.42 10 2 SER A 2 ? ? 85.07 151.67 11 2 LEU A 25 ? ? -94.54 45.95 12 2 LEU B 123 ? ? -69.00 1.23 13 2 ASP B 126 ? ? -62.55 64.19 14 3 SER A 2 ? ? 86.79 151.88 15 3 LEU A 25 ? ? -93.61 31.06 16 3 SER B 102 ? ? -35.04 -74.54 17 3 ASP B 126 ? ? -65.77 61.98 18 3 ASP C 228 ? ? -168.24 -151.31 19 3 GLN C 231 ? ? -63.66 8.59 20 4 SER A 2 ? ? 66.50 -63.51 21 4 LEU A 3 ? ? -161.21 -63.62 22 4 LEU A 25 ? ? -95.52 50.82 23 4 ASP B 126 ? ? -64.98 63.94 24 4 LEU C 225 ? ? -148.84 35.26 25 4 GLN C 231 ? ? 74.76 -60.74 26 5 SER A 2 ? ? 78.27 117.47 27 5 LEU A 25 ? ? -87.26 48.26 28 5 ASP C 228 ? ? -145.01 -141.13 29 5 GLN C 231 ? ? 77.36 -55.40 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;5-{[(4'-methoxybiphenyl-4-yl)methyl][(1S)-1,2,3,4-tetrahydronaphthalen-1-yl]carbamoyl}benzene-1,2,4-tricarboxylic acid ; _pdbx_entity_nonpoly.comp_id XIG #