HEADER DNA BINDING PROTEIN 30-MAR-10 2KW3 TITLE HETEROTRIMERIC INTERACTION BETWEEN RFX5 AND RFXAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN RFX5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-90; COMPND 5 SYNONYM: REGULATORY FACTOR X 5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: REGULATORY FACTOR X-ASSOCIATED PROTEIN; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: UNP RESIDUES 214-271; COMPND 11 SYNONYM: RFX-ASSOCIATED PROTEIN, RFX DNA-BINDING COMPLEX 36 KDA COMPND 12 SUBUNIT; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RFX5; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: RFXAP KEYWDS MHCII, RFX5, RFXAP, ENHANCEOSOME, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.M.LAIRD,L.L.BRIGGS,J.M.BOSS,M.F.SUMMERS,C.W.GARVIE REVDAT 1 25-AUG-10 2KW3 0 JRNL AUTH K.M.LAIRD,L.L.BRIGGS,J.M.BOSS,M.F.SUMMERS,C.W.GARVIE JRNL TITL SOLUTION STRUCTURE OF THE HETEROTRIMERIC COMPLEX BETWEEN JRNL TITL 2 RFX5 AND RFXAP REVEALS MOLECULAR DETAILS ASSOCIATED WITH JRNL TITL 3 MHCII GENE EXPRESSION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KW3 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB101645. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 15N] RFX5 AND RFXAP- REMARK 210 1, 1 MM [U-98% 13C; U-98% 15N] REMARK 210 RFX5 AND RFXAP-2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D HN(CO) REMARK 210 CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, TOPSPIN, REMARK 210 PROCHECKNMR, NMRVIEW, NMRDRAW REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 37 147.33 -178.18 REMARK 500 1 TYR A 65 -73.07 -98.11 REMARK 500 1 SER A 70 99.53 63.20 REMARK 500 1 PRO A 72 79.83 -69.77 REMARK 500 1 SER A 78 66.98 62.84 REMARK 500 1 GLU A 80 80.20 52.45 REMARK 500 1 SER A 82 -72.22 -144.58 REMARK 500 1 SER A 85 103.65 -173.80 REMARK 500 1 ASN A 86 -41.86 -166.45 REMARK 500 1 GLU A 88 -71.89 -165.99 REMARK 500 1 TYR A 89 131.63 -173.41 REMARK 500 1 ALA B 24 178.44 63.81 REMARK 500 1 GLU B 26 74.65 -150.20 REMARK 500 1 THR B 28 173.79 58.57 REMARK 500 1 THR B 37 140.46 -178.14 REMARK 500 1 SER B 70 26.55 -163.09 REMARK 500 1 THR B 73 -71.63 -51.76 REMARK 500 1 THR B 74 71.27 60.92 REMARK 500 1 SER B 78 78.03 57.85 REMARK 500 1 SER B 79 50.84 -94.22 REMARK 500 1 SER B 82 91.52 -179.35 REMARK 500 1 THR B 83 -73.49 -90.11 REMARK 500 1 LEU B 84 -66.35 -179.14 REMARK 500 1 SER B 85 96.15 63.17 REMARK 500 1 ASN B 86 111.27 -174.18 REMARK 500 1 GLU B 88 88.25 -163.81 REMARK 500 1 TYR B 89 -73.59 -157.95 REMARK 500 1 THR C 214 171.35 -54.68 REMARK 500 1 PRO C 221 79.44 -69.79 REMARK 500 1 ARG C 223 80.99 63.19 REMARK 500 1 LEU C 238 -67.62 72.38 REMARK 500 1 LEU C 239 -75.76 -105.62 REMARK 500 1 ARG C 240 50.58 178.43 REMARK 500 1 LEU C 260 99.76 60.91 REMARK 500 1 GLN C 266 89.91 61.79 REMARK 500 1 PRO C 268 -175.89 -69.73 REMARK 500 1 SER C 271 179.65 59.97 REMARK 500 2 ALA A 24 -41.14 -172.75 REMARK 500 2 THR A 37 54.82 179.74 REMARK 500 2 ILE A 38 152.71 64.92 REMARK 500 2 SER A 57 104.61 -51.82 REMARK 500 2 THR A 73 -43.35 -177.17 REMARK 500 2 SER A 78 -67.20 -175.35 REMARK 500 2 SER A 79 75.23 62.73 REMARK 500 2 SER A 82 71.38 -174.97 REMARK 500 2 THR A 83 84.23 -166.28 REMARK 500 2 SER A 85 165.84 63.14 REMARK 500 2 ASN A 86 74.76 -170.37 REMARK 500 2 GLU A 87 46.67 -155.39 REMARK 500 2 PRO B 27 -171.31 -69.68 REMARK 500 REMARK 500 THIS ENTRY HAS 611 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KW3 A 24 90 UNP P48382 RFX5_HUMAN 24 90 DBREF 2KW3 B 24 90 UNP P48382 RFX5_HUMAN 24 90 DBREF 2KW3 C 214 272 UNP O00287 RFXAP_HUMAN 214 272 SEQADV 2KW3 GLY A 23 UNP P48382 EXPRESSION TAG SEQADV 2KW3 GLY B 23 UNP P48382 EXPRESSION TAG SEQADV 2KW3 GLY C 211 UNP O00287 EXPRESSION TAG SEQADV 2KW3 HIS C 212 UNP O00287 EXPRESSION TAG SEQADV 2KW3 GLY C 213 UNP O00287 EXPRESSION TAG SEQRES 1 A 68 GLY ALA GLY GLU PRO THR THR LEU LEU GLN ARG LEU ARG SEQRES 2 A 68 GLY THR ILE SER LYS ALA VAL GLN ASN LYS VAL GLU GLY SEQRES 3 A 68 ILE LEU GLN ASP VAL GLN LYS PHE SER ASP ASN ASP LYS SEQRES 4 A 68 LEU TYR LEU TYR LEU GLN LEU PRO SER GLY PRO THR THR SEQRES 5 A 68 GLY ASP LYS SER SER GLU PRO SER THR LEU SER ASN GLU SEQRES 6 A 68 GLU TYR MET SEQRES 1 B 68 GLY ALA GLY GLU PRO THR THR LEU LEU GLN ARG LEU ARG SEQRES 2 B 68 GLY THR ILE SER LYS ALA VAL GLN ASN LYS VAL GLU GLY SEQRES 3 B 68 ILE LEU GLN ASP VAL GLN LYS PHE SER ASP ASN ASP LYS SEQRES 4 B 68 LEU TYR LEU TYR LEU GLN LEU PRO SER GLY PRO THR THR SEQRES 5 B 68 GLY ASP LYS SER SER GLU PRO SER THR LEU SER ASN GLU SEQRES 6 B 68 GLU TYR MET SEQRES 1 C 62 GLY HIS GLY THR GLY SER PHE GLY ASP ARG PRO ALA ARG SEQRES 2 C 62 PRO THR LEU LEU GLU GLN VAL LEU ASN GLN LYS ARG LEU SEQRES 3 C 62 SER LEU LEU ARG SER PRO GLU VAL VAL GLN PHE LEU GLN SEQRES 4 C 62 LYS GLN GLN GLN LEU LEU ASN GLN GLN VAL LEU GLU GLN SEQRES 5 C 62 ARG GLN GLN GLN PHE PRO GLY THR SER MET HELIX 1 1 THR A 29 THR A 37 1 9 HELIX 2 2 SER A 39 LYS A 55 1 17 HELIX 3 3 SER A 57 GLN A 67 1 11 HELIX 4 4 THR A 73 SER A 79 1 7 HELIX 5 5 THR B 29 GLY B 36 1 8 HELIX 6 6 SER B 39 LYS B 55 1 17 HELIX 7 7 ASP B 58 GLN B 67 1 10 HELIX 8 8 THR B 73 SER B 79 1 7 HELIX 9 9 THR C 225 LEU C 238 1 14 HELIX 10 10 SER C 241 VAL C 259 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1