HEADER PROTEIN BINDING 04-MAY-10 2KXF TITLE SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FBP-INTERACTING TITLE 2 REPRESSOR (FIR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(U)-BINDING-SPLICING FACTOR PUF60; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 119-314; COMPND 5 SYNONYM: 60 KDA POLY(U)-BINDING-SPLICING FACTOR, FUSE-BINDING COMPND 6 PROTEIN-INTERACTING REPRESSOR, FBP-INTERACTING REPRESSOR, SIAH- COMPND 7 BINDING PROTEIN 1, SIAH-BP1, RO-BINDING PROTEIN 1, ROBP1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM-30 KEYWDS RRM, RNA BINDING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.CUKIER,A.RAMOS,D.HOLLINGWORTH,I.DIAZ-MORENO,G.KELLY REVDAT 2 18-DEC-19 2KXF 1 JRNL REMARK SEQADV REVDAT 1 18-AUG-10 2KXF 0 JRNL AUTH C.D.CUKIER,D.HOLLINGWORTH,S.R.MARTIN,G.KELLY,I.DIAZ-MORENO, JRNL AUTH 2 A.RAMOS JRNL TITL MOLECULAR BASIS OF FIR-MEDIATED C-MYC TRANSCRIPTIONAL JRNL TITL 2 CONTROL. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1058 2010 JRNL REFN ESSN 1545-9985 JRNL PMID 20711187 JRNL DOI 10.1038/NSMB.1883 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.4 MM [U-15N] ENTITY-1, 10 REMARK 210 MM TRIS-HCL PH 8.0-2, 50 MM REMARK 210 SODIUM CHLORIDE-3, 2 MM TCEP-4, REMARK 210 90% H2O/10% D2O; 0.3-0.4 MM [U- REMARK 210 13C; U-15N] ENTITY-5, 10 MM TRIS- REMARK 210 HCL PH 8.0-6, 50 MM SODIUM REMARK 210 CHLORIDE-7, 2 MM TCEP-8, 90% H2O/ REMARK 210 10% D2O; 0.3-0.4 MM [U-13C; U- REMARK 210 15N; U70%-2H] ENTITY-9, 10 MM REMARK 210 TRIS-HCL PH 8.0-10, 50 MM SODIUM REMARK 210 CHLORIDE-11, 2 MM TCEP-12, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HN(COCA)CB; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCO; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 13C NOESY OPTIMISED FOR REMARK 210 AROMATICS; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, SPARKY, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 236 OE2 GLU A 256 1.54 REMARK 500 OD1 ASP A 243 HG1 THR A 245 1.59 REMARK 500 O TYR A 115 H GLY A 186 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 100 -62.82 73.37 REMARK 500 1 SER A 118 -66.69 76.35 REMARK 500 1 ILE A 119 -91.57 61.88 REMARK 500 1 TYR A 120 140.01 165.94 REMARK 500 1 GLU A 122 -51.98 -174.53 REMARK 500 1 ASN A 174 44.38 -89.11 REMARK 500 1 SER A 175 -73.87 -115.59 REMARK 500 1 LEU A 178 162.15 63.84 REMARK 500 1 SER A 189 39.82 -77.20 REMARK 500 1 ASN A 190 28.09 45.20 REMARK 500 1 ALA A 296 24.12 -141.81 REMARK 500 2 GLU A 122 -43.34 -165.67 REMARK 500 2 MET A 150 -22.86 74.19 REMARK 500 2 SER A 175 -73.58 -72.32 REMARK 500 2 LEU A 178 127.40 67.56 REMARK 500 2 LEU A 292 13.09 -169.42 REMARK 500 2 ALA A 296 -69.83 -147.23 REMARK 500 3 TYR A 120 140.88 74.55 REMARK 500 3 GLU A 122 -54.10 -159.58 REMARK 500 3 SER A 147 166.37 68.17 REMARK 500 3 SER A 175 -73.49 -102.49 REMARK 500 3 ARG A 187 134.60 -178.07 REMARK 500 3 SER A 237 145.37 -172.24 REMARK 500 3 THR A 245 48.16 -157.78 REMARK 500 3 PRO A 289 76.05 -68.39 REMARK 500 3 THR A 294 76.88 61.85 REMARK 500 4 GLN A 105 28.94 -78.82 REMARK 500 4 GLU A 122 -37.75 -158.46 REMARK 500 4 SER A 175 -72.81 -101.31 REMARK 500 4 ALA A 296 -99.04 60.12 REMARK 500 5 MET A 101 -32.41 -131.10 REMARK 500 5 ARG A 104 76.16 -114.73 REMARK 500 5 GLN A 105 82.39 54.35 REMARK 500 5 TYR A 120 139.28 76.04 REMARK 500 5 GLU A 122 -35.04 -163.59 REMARK 500 5 ASP A 146 104.56 -172.16 REMARK 500 5 LYS A 153 -169.14 -112.62 REMARK 500 5 ASN A 174 23.26 -79.81 REMARK 500 5 SER A 175 -73.35 -114.59 REMARK 500 5 LEU A 178 -83.99 60.13 REMARK 500 5 ASN A 182 76.43 61.54 REMARK 500 5 PHE A 208 -169.96 -109.14 REMARK 500 5 SER A 237 141.91 -170.34 REMARK 500 5 THR A 245 62.20 -162.93 REMARK 500 5 LYS A 250 -80.60 -77.06 REMARK 500 6 ALA A 102 -71.24 -115.68 REMARK 500 6 ARG A 104 -84.58 64.75 REMARK 500 6 GLU A 122 -36.62 178.54 REMARK 500 6 LYS A 153 62.12 36.98 REMARK 500 6 ASN A 174 32.50 -83.61 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KXH RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FIR IN THE REMARK 900 COMPLEX WITH FBP NBOX PEPTIDE DBREF 2KXF A 102 297 UNP Q9UHX1 PUF60_HUMAN 119 314 SEQADV 2KXF GLY A 99 UNP Q9UHX1 EXPRESSION TAG SEQADV 2KXF ALA A 100 UNP Q9UHX1 EXPRESSION TAG SEQADV 2KXF MET A 101 UNP Q9UHX1 EXPRESSION TAG SEQRES 1 A 199 GLY ALA MET ALA GLN ARG GLN ARG ALA LEU ALA ILE MET SEQRES 2 A 199 CYS ARG VAL TYR VAL GLY SER ILE TYR TYR GLU LEU GLY SEQRES 3 A 199 GLU ASP THR ILE ARG GLN ALA PHE ALA PRO PHE GLY PRO SEQRES 4 A 199 ILE LYS SER ILE ASP MET SER TRP ASP SER VAL THR MET SEQRES 5 A 199 LYS HIS LYS GLY PHE ALA PHE VAL GLU TYR GLU VAL PRO SEQRES 6 A 199 GLU ALA ALA GLN LEU ALA LEU GLU GLN MET ASN SER VAL SEQRES 7 A 199 MET LEU GLY GLY ARG ASN ILE LYS VAL GLY ARG PRO SER SEQRES 8 A 199 ASN ILE GLY GLN ALA GLN PRO ILE ILE ASP GLN LEU ALA SEQRES 9 A 199 GLU GLU ALA ARG ALA PHE ASN ARG ILE TYR VAL ALA SER SEQRES 10 A 199 VAL HIS GLN ASP LEU SER ASP ASP ASP ILE LYS SER VAL SEQRES 11 A 199 PHE GLU ALA PHE GLY LYS ILE LYS SER CYS THR LEU ALA SEQRES 12 A 199 ARG ASP PRO THR THR GLY LYS HIS LYS GLY TYR GLY PHE SEQRES 13 A 199 ILE GLU TYR GLU LYS ALA GLN SER SER GLN ASP ALA VAL SEQRES 14 A 199 SER SER MET ASN LEU PHE ASP LEU GLY GLY GLN TYR LEU SEQRES 15 A 199 ARG VAL GLY LYS ALA VAL THR PRO PRO MET PRO LEU LEU SEQRES 16 A 199 THR PRO ALA THR HELIX 1 1 ARG A 104 CYS A 112 1 9 HELIX 2 2 GLY A 124 ALA A 133 1 10 HELIX 3 3 VAL A 162 MET A 173 1 12 HELIX 4 4 GLN A 193 ASN A 209 1 17 HELIX 5 5 SER A 221 ALA A 231 1 11 HELIX 6 6 LYS A 259 MET A 270 1 12 SHEET 1 A 4 ILE A 138 MET A 143 0 SHEET 2 A 4 PHE A 155 TYR A 160 -1 O GLU A 159 N SER A 140 SHEET 3 A 4 ARG A 113 GLY A 117 -1 N VAL A 116 O ALA A 156 SHEET 4 A 4 LYS A 184 VAL A 185 -1 O LYS A 184 N GLY A 117 SHEET 1 B 5 ILE A 235 ARG A 242 0 SHEET 2 B 5 HIS A 249 TYR A 257 -1 O GLU A 256 N LYS A 236 SHEET 3 B 5 ARG A 210 ALA A 214 -1 N ILE A 211 O ILE A 255 SHEET 4 B 5 TYR A 279 LYS A 284 -1 O GLY A 283 N TYR A 212 SHEET 5 B 5 PHE A 273 ASP A 274 -1 N PHE A 273 O LEU A 280 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1