data_2KXZ # _entry.id 2KXZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KXZ pdb_00002kxz 10.2210/pdb2kxz/pdb RCSB RCSB101713 ? ? WWPDB D_1000101713 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2KY0 unspecified . PDB 2KY1 unspecified . PDB 2KY2 unspecified . BMRB 16950 unspecified . BMRB 16951 unspecified . BMRB 16952 unspecified . BMRB 16953 unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KXZ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-05-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hammond, N.B.' 1 'Kennedy, S.D.' 2 'Turner, D.H.' 3 # _citation.id primary _citation.title ;RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 49 _citation.page_first 5817 _citation.page_last 5827 _citation.year 2010 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20481618 _citation.pdbx_database_id_DOI 10.1021/bi100332r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hammond, N.B.' 1 ? primary 'Tolbert, B.S.' 2 ? primary 'Kierzek, R.' 3 ? primary 'Turner, D.H.' 4 ? primary 'Kennedy, S.D.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'" _entity.formula_weight 3530.178 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GACAAGUGUCA _entity_poly.pdbx_seq_one_letter_code_can GACAAGUGUCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 A n 1 3 C n 1 4 A n 1 5 A n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 C n 1 11 A n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KXZ _struct_ref.pdbx_db_accession 2KXZ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GACAAGUGUCA _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KXZ A 1 ? 11 ? 2KXZ 1 ? 11 ? 1 11 2 1 2KXZ B 1 ? 11 ? 2KXZ 12 ? 22 ? 12 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-13C HSQC' 2 3 2 '2D 1H-1H TOCSY' 2 4 2 '2D DQF-COSY' 2 5 2 '2D 1H-31P HETCOR' 2 6 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 0.1 6.1 ambient ? 273 K 2 0.1 6.1 ambient ? 283 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM RNA (5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3')-1, 80 mM sodium chloride-2, 10 mM sodium phosphate-3, 0.5 mM EDTA-4, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1 mM RNA (5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3')-5, 80 mM sodium chloride-6, 10 mM sodium phosphate-7, 0.5 mM EDTA-8, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 500 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KXZ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KXZ _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KXZ _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' Sparky 3.12 1 Goddard 'data analysis' Sparky 3.12 2 Varian collection VNMR 6.1C 3 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.2 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber 9 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Tandem AG pairs with AU closing pairs: r(GACAAGUGUCA)2' _exptl.entry_id 2KXZ _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KXZ _struct.title ;The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA ; _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KXZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tandem AG pairs, thermodynamics, imino AG pair, dual syn GG pair, extrahelical U, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 2 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 2 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 3 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 3 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 3 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 4 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 4 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B G 6 N1 ? ? A A 5 B G 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B G 6 O6 ? ? A A 5 B G 17 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B A 5 N1 ? ? A G 6 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B A 5 N6 ? ? A G 6 B A 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 7 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 7 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 8 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 8 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 8 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 9 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 9 B A 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2KXZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 A 2 2 2 A A A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n B 1 1 G 1 12 12 G G B . n B 1 2 A 2 13 13 A A B . n B 1 3 C 3 14 14 C C B . n B 1 4 A 4 15 15 A A B . n B 1 5 A 5 16 16 A A B . n B 1 6 G 6 17 17 G G B . n B 1 7 U 7 18 18 U U B . n B 1 8 G 8 19 19 G G B . n B 1 9 U 9 20 20 U U B . n B 1 10 C 10 21 21 C C B . n B 1 11 A 11 22 22 A A B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;RNA (5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3')-1 ; 1 ? mM ? 1 'sodium chloride-2' 80 ? mM ? 1 'sodium phosphate-3' 10 ? mM ? 1 EDTA-4 0.5 ? mM ? 1 ;RNA (5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3')-5 ; 1 ? mM ? 2 'sodium chloride-6' 80 ? mM ? 2 'sodium phosphate-7' 10 ? mM ? 2 EDTA-8 0.5 ? mM ? 2 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.89 117.00 -3.11 0.50 N 2 1 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.03 117.70 3.33 0.50 N 3 1 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 113.52 118.60 -5.08 0.60 N 4 1 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.37 121.90 -4.53 0.70 N 5 1 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.36 117.70 3.66 0.50 N 6 1 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.08 118.60 -4.52 0.60 N 7 1 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.30 117.70 3.60 0.50 N 8 1 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.07 118.60 -4.53 0.60 N 9 1 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.16 121.90 -4.74 0.70 N 10 1 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.50 117.00 -3.50 0.50 N 11 1 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.56 117.70 3.86 0.50 N 12 1 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 112.88 118.60 -5.72 0.60 N 13 1 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.87 117.00 -3.13 0.50 N 14 1 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.16 117.70 3.46 0.50 N 15 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.93 118.60 -4.67 0.60 N 16 1 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.27 121.90 -4.63 0.70 N 17 1 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.29 117.70 3.59 0.50 N 18 1 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.20 118.60 -4.40 0.60 N 19 1 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.13 117.70 3.43 0.50 N 20 1 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.49 118.60 -4.11 0.60 N 21 1 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 116.78 121.90 -5.12 0.70 N 22 1 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.75 117.00 -3.25 0.50 N 23 1 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.23 117.70 3.53 0.50 N 24 1 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.52 118.60 -5.08 0.60 N 25 2 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.09 117.70 3.39 0.50 N 26 2 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 113.73 118.60 -4.87 0.60 N 27 2 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.86 108.50 4.36 0.70 N 28 2 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.25 121.90 -4.65 0.70 N 29 2 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.85 117.00 -3.15 0.50 N 30 2 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.33 117.70 3.63 0.50 N 31 2 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 113.96 118.60 -4.64 0.60 N 32 2 C4 A A 5 ? ? C5 A A 5 ? ? C6 A A 5 ? ? 113.80 117.00 -3.20 0.50 N 33 2 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.30 117.70 3.60 0.50 N 34 2 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 113.82 118.60 -4.78 0.60 N 35 2 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.86 121.90 -5.04 0.70 N 36 2 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.97 117.00 -3.03 0.50 N 37 2 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.24 117.70 3.54 0.50 N 38 2 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.20 118.60 -5.40 0.60 N 39 2 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.92 117.00 -3.08 0.50 N 40 2 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.12 117.70 3.42 0.50 N 41 2 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.88 118.60 -4.72 0.60 N 42 2 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.80 121.90 -5.10 0.70 N 43 2 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.63 117.70 3.93 0.50 N 44 2 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.76 118.60 -4.84 0.60 N 45 2 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.40 117.70 3.70 0.50 N 46 2 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.27 118.60 -4.33 0.60 N 47 2 "O4'" B U 20 ? ? "C1'" B U 20 ? ? N1 B U 20 ? ? 112.91 108.50 4.41 0.70 N 48 2 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 116.96 121.90 -4.94 0.70 N 49 2 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.79 117.00 -3.21 0.50 N 50 2 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.34 117.70 3.64 0.50 N 51 2 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 112.94 118.60 -5.66 0.60 N 52 3 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.97 117.00 -3.03 0.50 N 53 3 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.10 117.70 3.40 0.50 N 54 3 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 113.88 118.60 -4.72 0.60 N 55 3 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 116.86 121.90 -5.04 0.70 N 56 3 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.15 117.70 3.45 0.50 N 57 3 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.54 118.60 -4.06 0.60 N 58 3 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.48 117.70 3.78 0.50 N 59 3 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.23 118.60 -4.37 0.60 N 60 3 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.02 121.90 -4.88 0.70 N 61 3 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.74 117.00 -3.26 0.50 N 62 3 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.26 117.70 3.56 0.50 N 63 3 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.61 118.60 -4.99 0.60 N 64 3 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.79 117.00 -3.21 0.50 N 65 3 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.29 117.70 3.59 0.50 N 66 3 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.29 118.60 -5.31 0.60 N 67 3 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.03 121.90 -4.87 0.70 N 68 3 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.79 117.00 -3.21 0.50 N 69 3 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.30 117.70 3.60 0.50 N 70 3 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.36 118.60 -4.24 0.60 N 71 3 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.13 117.70 3.43 0.50 N 72 3 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.97 118.60 -4.63 0.60 N 73 3 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 116.78 121.90 -5.12 0.70 N 74 3 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.76 117.00 -3.24 0.50 N 75 3 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.32 117.70 3.62 0.50 N 76 3 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.48 118.60 -5.12 0.60 N 77 4 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.98 117.00 -3.02 0.50 N 78 4 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.10 117.70 3.40 0.50 N 79 4 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 113.94 118.60 -4.66 0.60 N 80 4 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.08 121.90 -4.82 0.70 N 81 4 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.72 117.00 -3.28 0.50 N 82 4 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.65 117.70 3.95 0.50 N 83 4 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.17 118.60 -4.43 0.60 N 84 4 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.27 117.70 3.57 0.50 N 85 4 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 113.83 118.60 -4.77 0.60 N 86 4 N1 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 122.66 118.90 3.76 0.60 N 87 4 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.62 121.90 -5.28 0.70 N 88 4 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.66 117.00 -3.34 0.50 N 89 4 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.51 117.70 3.81 0.50 N 90 4 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.02 118.60 -5.58 0.60 N 91 4 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.10 117.70 3.40 0.50 N 92 4 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.96 118.60 -4.64 0.60 N 93 4 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.22 121.90 -4.68 0.70 N 94 4 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.27 117.70 3.57 0.50 N 95 4 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.09 118.60 -4.51 0.60 N 96 4 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.26 117.70 3.56 0.50 N 97 4 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.01 118.60 -4.59 0.60 N 98 4 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 117.14 121.90 -4.76 0.70 N 99 4 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.82 117.00 -3.18 0.50 N 100 4 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.30 117.70 3.60 0.50 N 101 4 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.31 118.60 -5.29 0.60 N 102 5 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.83 117.00 -3.17 0.50 N 103 5 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.22 117.70 3.52 0.50 N 104 5 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 114.20 118.60 -4.40 0.60 N 105 5 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 116.95 121.90 -4.95 0.70 N 106 5 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.95 117.00 -3.05 0.50 N 107 5 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.27 117.70 3.57 0.50 N 108 5 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.30 118.60 -4.30 0.60 N 109 5 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.36 117.70 3.66 0.50 N 110 5 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 113.76 118.60 -4.84 0.60 N 111 5 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.88 121.90 -5.02 0.70 N 112 5 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.86 117.00 -3.14 0.50 N 113 5 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.45 117.70 3.75 0.50 N 114 5 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.07 118.60 -5.53 0.60 N 115 5 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.09 117.70 3.39 0.50 N 116 5 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.87 118.60 -4.73 0.60 N 117 5 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.86 108.50 4.36 0.70 N 118 5 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.02 121.90 -4.88 0.70 N 119 5 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.18 117.70 3.48 0.50 N 120 5 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.26 118.60 -4.34 0.60 N 121 5 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.84 117.00 -3.16 0.50 N 122 5 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.30 117.70 3.60 0.50 N 123 5 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.97 118.60 -4.63 0.60 N 124 5 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 117.13 121.90 -4.77 0.70 N 125 5 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.99 117.00 -3.01 0.50 N 126 5 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.13 117.70 3.43 0.50 N 127 5 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.32 118.60 -5.28 0.60 N 128 6 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.81 117.00 -3.19 0.50 N 129 6 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.19 117.70 3.49 0.50 N 130 6 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 114.18 118.60 -4.42 0.60 N 131 6 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.07 121.90 -4.83 0.70 N 132 6 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.73 117.00 -3.27 0.50 N 133 6 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.42 117.70 3.72 0.50 N 134 6 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 113.98 118.60 -4.62 0.60 N 135 6 C4 A A 5 ? ? C5 A A 5 ? ? C6 A A 5 ? ? 113.87 117.00 -3.13 0.50 N 136 6 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.40 117.70 3.70 0.50 N 137 6 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 113.57 118.60 -5.03 0.60 N 138 6 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.90 121.90 -5.00 0.70 N 139 6 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.97 117.00 -3.03 0.50 N 140 6 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.15 117.70 3.45 0.50 N 141 6 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.68 118.60 -4.92 0.60 N 142 6 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 120.81 117.70 3.11 0.50 N 143 6 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.79 118.60 -4.81 0.60 N 144 6 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.81 108.50 4.31 0.70 N 145 6 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.19 121.90 -4.71 0.70 N 146 6 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.83 117.00 -3.17 0.50 N 147 6 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.30 117.70 3.60 0.50 N 148 6 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 114.70 118.60 -3.90 0.60 N 149 6 C4 B A 16 ? ? C5 B A 16 ? ? C6 B A 16 ? ? 113.82 117.00 -3.18 0.50 N 150 6 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.26 117.70 3.56 0.50 N 151 6 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 113.49 118.60 -5.11 0.60 N 152 6 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 116.96 121.90 -4.94 0.70 N 153 6 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.62 117.00 -3.38 0.50 N 154 6 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.45 117.70 3.75 0.50 N 155 6 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.39 118.60 -5.21 0.60 N 156 7 C4 A A 2 ? ? C5 A A 2 ? ? C6 A A 2 ? ? 113.90 117.00 -3.10 0.50 N 157 7 C5 A A 2 ? ? C6 A A 2 ? ? N1 A A 2 ? ? 121.08 117.70 3.38 0.50 N 158 7 N1 A A 2 ? ? C6 A A 2 ? ? N6 A A 2 ? ? 113.79 118.60 -4.81 0.60 N 159 7 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.19 121.90 -4.71 0.70 N 160 7 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.83 117.00 -3.17 0.50 N 161 7 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.52 117.70 3.82 0.50 N 162 7 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 113.91 118.60 -4.69 0.60 N 163 7 C5 A A 5 ? ? C6 A A 5 ? ? N1 A A 5 ? ? 121.05 117.70 3.35 0.50 N 164 7 N1 A A 5 ? ? C6 A A 5 ? ? N6 A A 5 ? ? 114.05 118.60 -4.55 0.60 N 165 7 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 117.18 121.90 -4.72 0.70 N 166 7 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.86 117.00 -3.14 0.50 N 167 7 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.35 117.70 3.65 0.50 N 168 7 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 113.13 118.60 -5.47 0.60 N 169 7 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.95 117.00 -3.05 0.50 N 170 7 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.11 117.70 3.41 0.50 N 171 7 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.70 118.60 -4.90 0.60 N 172 7 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.20 121.90 -4.70 0.70 N 173 7 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.68 117.00 -3.32 0.50 N 174 7 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.69 117.70 3.99 0.50 N 175 7 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.80 118.60 -4.80 0.60 N 176 7 C5 B A 16 ? ? C6 B A 16 ? ? N1 B A 16 ? ? 121.14 117.70 3.44 0.50 N 177 7 N1 B A 16 ? ? C6 B A 16 ? ? N6 B A 16 ? ? 114.09 118.60 -4.51 0.60 N 178 7 N3 B C 21 ? ? C2 B C 21 ? ? O2 B C 21 ? ? 116.98 121.90 -4.92 0.70 N 179 7 C4 B A 22 ? ? C5 B A 22 ? ? C6 B A 22 ? ? 113.76 117.00 -3.24 0.50 N 180 7 C5 B A 22 ? ? C6 B A 22 ? ? N1 B A 22 ? ? 121.45 117.70 3.75 0.50 N 181 7 N1 B A 22 ? ? C6 B A 22 ? ? N6 B A 22 ? ? 113.71 118.60 -4.89 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 4 _pdbx_validate_planes.auth_comp_id A _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 13 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.053 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KXZ 'a-form double helix' 2KXZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 10 1_555 -0.433 -0.109 -0.024 -10.238 -11.075 -1.005 1 A_G1:C21_B A 1 ? B 21 ? 19 1 1 A A 2 1_555 B U 9 1_555 0.088 0.016 0.053 -3.808 -13.709 1.841 2 A_A2:U20_B A 2 ? B 20 ? 20 1 1 A C 3 1_555 B G 8 1_555 0.440 -0.131 0.171 1.659 -16.585 0.016 3 A_C3:G19_B A 3 ? B 19 ? 19 1 1 A A 4 1_555 B U 7 1_555 0.224 0.084 -0.126 -5.128 -15.683 -4.986 4 A_A4:U18_B A 4 ? B 18 ? 20 1 1 A A 5 1_555 B G 6 1_555 0.113 1.631 -0.294 -0.403 -11.168 -17.707 5 A_A5:G17_B A 5 ? B 17 ? 8 1 1 A G 6 1_555 B A 5 1_555 0.073 1.616 -0.244 -8.047 -16.834 -16.620 6 A_G6:A16_B A 6 ? B 16 ? 8 1 1 A U 7 1_555 B A 4 1_555 -0.236 0.076 -0.043 1.667 -13.091 -5.027 7 A_U7:A15_B A 7 ? B 15 ? 20 1 1 A G 8 1_555 B C 3 1_555 -0.509 -0.165 0.249 0.697 -16.770 -0.294 8 A_G8:C14_B A 8 ? B 14 ? 19 1 1 A U 9 1_555 B A 2 1_555 -0.071 0.010 0.078 3.505 -14.968 -0.754 9 A_U9:A13_B A 9 ? B 13 ? 20 1 1 A C 10 1_555 B G 1 1_555 0.455 -0.133 0.095 6.562 -12.637 -1.123 10 A_C10:G12_B A 10 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 10 1_555 A A 2 1_555 B U 9 1_555 0.122 -1.857 3.155 0.689 8.493 30.695 -4.768 -0.111 2.565 15.668 -1.272 31.828 1 AA_G1A2:U20C21_BB A 1 ? B 21 ? A 2 ? B 20 ? 1 A A 2 1_555 B U 9 1_555 A C 3 1_555 B G 8 1_555 -0.082 -1.615 3.249 0.443 3.461 31.050 -3.634 0.233 3.054 6.439 -0.825 31.240 2 AA_A2C3:G19U20_BB A 2 ? B 20 ? A 3 ? B 19 ? 1 A C 3 1_555 B G 8 1_555 A A 4 1_555 B U 7 1_555 -0.172 -1.549 3.333 3.937 16.388 33.518 -4.390 0.743 2.320 26.442 -6.352 37.408 3 AA_C3A4:U18G19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A A 4 1_555 B U 7 1_555 A A 5 1_555 B G 6 1_555 -0.539 -1.994 3.200 2.636 1.958 29.928 -4.220 1.551 3.009 3.777 -5.086 30.104 4 AA_A4A5:G17U18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A A 5 1_555 B G 6 1_555 A G 6 1_555 B A 5 1_555 0.343 -2.788 3.596 1.951 11.950 21.869 -9.632 -0.274 1.864 28.830 -4.707 24.961 5 AA_A5G6:A16G17_BB A 5 ? B 17 ? A 6 ? B 16 ? 1 A G 6 1_555 B A 5 1_555 A U 7 1_555 B A 4 1_555 0.550 -1.822 3.176 -2.138 -0.894 28.364 -3.508 -1.595 3.182 -1.821 4.355 28.457 6 AA_G6U7:A15A16_BB A 6 ? B 16 ? A 7 ? B 15 ? 1 A U 7 1_555 B A 4 1_555 A G 8 1_555 B C 3 1_555 0.169 -1.573 3.219 -4.166 14.132 32.131 -4.456 -0.828 2.308 24.019 7.080 35.267 7 AA_U7G8:C14A15_BB A 7 ? B 15 ? A 8 ? B 14 ? 1 A G 8 1_555 B C 3 1_555 A U 9 1_555 B A 2 1_555 -0.020 -1.660 3.265 -0.096 3.210 33.204 -3.411 0.019 3.096 5.601 0.167 33.355 8 AA_G8U9:A13C14_BB A 8 ? B 14 ? A 9 ? B 13 ? 1 A U 9 1_555 B A 2 1_555 A C 10 1_555 B G 1 1_555 0.084 -1.831 3.211 -0.382 6.213 32.264 -4.228 -0.210 2.817 11.051 0.680 32.844 9 AA_U9C10:G12A13_BB A 9 ? B 13 ? A 10 ? B 12 ? #