data_2KZL # _entry.id 2KZL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KZL pdb_00002kzl 10.2210/pdb2kzl/pdb RCSB RCSB101771 ? ? WWPDB D_1000101771 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KZL _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-18 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Wang, J.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, J.' 1 ? primary 'Nikonowicz, E.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (55-MER)' _entity.formula_weight 17743.633 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA' # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 U n 1 7 A n 1 8 A n 1 9 A n 1 10 G n 1 11 A n 1 12 U n 1 13 U n 1 14 G n 1 15 A n 1 16 G n 1 17 A n 1 18 C n 1 19 A n 1 20 A n 1 21 G n 1 22 U n 1 23 A n 1 24 G n 1 25 G n 1 26 A n 1 27 C n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 U n 1 34 C n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 U n 1 40 A n 1 41 C n 1 42 A n 1 43 C n 1 44 U n 1 45 C n 1 46 A n 1 47 U n 1 48 G n 1 49 A n 1 50 A n 1 51 C n 1 52 U n 1 53 C n 1 54 C n 1 55 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Bacillus subtilis subsp. subtilis str. 168' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 224308 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 U 12 12 12 U U A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 A 37 37 37 A A A . n A 1 38 A 38 38 38 A A A . n A 1 39 U 39 39 39 U U A . n A 1 40 A 40 40 40 A A A . n A 1 41 C 41 41 41 C C A . n A 1 42 A 42 42 42 A A A . n A 1 43 C 43 43 43 C C A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 A 46 46 46 A A A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 A 50 50 50 A A A . n A 1 51 C 51 51 51 C C A . n A 1 52 U 52 52 52 U U A . n A 1 53 C 53 53 53 C C A . n A 1 54 C 54 54 54 C C A . n A 1 55 C 55 55 55 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KZL _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KZL _struct.title 'Specifier domain and GA motif region of B. subtilis tyrS T box leader RNA' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KZL _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Specifier Domain, loop E motif, GA motif, Kink turn, K-turn, T box riboswitch, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KZL _struct_ref.pdbx_db_accession 2KZL _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2KZL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 55 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2KZL _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 55 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 55 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 55 N3 ? ? A G 1 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 55 O2 ? ? A G 1 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 55 N4 ? ? A G 1 A C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 2 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 2 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 2 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 53 N3 ? ? A G 3 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 3 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 53 N4 ? ? A G 3 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 52 N3 ? ? A A 4 A U 52 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 5 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 5 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 5 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 50 N1 ? ? A U 6 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 50 N6 ? ? A U 6 A A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 10 N2 ? ? ? 1_555 A A 49 N7 ? ? A G 10 A A 49 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A G 10 N3 ? ? ? 1_555 A A 49 N6 ? ? A G 10 A A 49 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A A 11 N6 ? ? ? 1_555 A G 48 N3 ? ? A A 11 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 48 N2 ? ? A A 11 A G 48 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 A U 47 O4 ? ? A U 12 A U 47 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 13 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 13 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 14 A C 45 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 44 N3 ? ? A A 15 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 44 O4 ? ? A A 15 A U 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 16 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 20 N6 ? ? ? 1_555 A A 38 N7 ? ? A A 20 A A 38 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog30 hydrog ? ? A A 20 N7 ? ? ? 1_555 A A 38 N6 ? ? A A 20 A A 38 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog31 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 37 N7 ? ? A U 22 A A 37 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? A U 22 O2 ? ? ? 1_555 A A 37 N6 ? ? A U 22 A A 37 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog33 hydrog ? ? A A 23 N6 ? ? ? 1_555 A G 36 N3 ? ? A A 23 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? A A 23 N7 ? ? ? 1_555 A G 36 N2 ? ? A A 23 A G 36 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 35 O2 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog36 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 25 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 33 N3 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 33 O4 ? ? A A 26 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N7 A A 11 ? ? H22 A G 48 ? ? 1.57 2 1 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 3 2 "O2'" A C 54 ? ? "H5'" A C 55 ? ? 1.58 4 2 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 5 2 O2 A C 27 ? ? H21 A G 32 ? ? 1.59 6 2 OP2 A U 29 ? ? H42 A C 30 ? ? 1.59 7 2 N7 A A 11 ? ? H22 A G 48 ? ? 1.60 8 3 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 9 4 N7 A A 11 ? ? H22 A G 48 ? ? 1.58 10 4 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.59 11 5 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 12 6 H41 A C 27 ? ? O6 A G 32 ? ? 1.59 13 7 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 14 7 N7 A A 11 ? ? H22 A G 48 ? ? 1.59 15 8 "O2'" A G 25 ? ? H8 A A 26 ? ? 1.58 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A A 9 ? ? "C1'" A A 9 ? ? 1.475 1.526 -0.051 0.008 N 2 1 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.358 1.451 -0.093 0.013 N 3 2 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.359 1.451 -0.092 0.013 N 4 3 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.360 1.451 -0.091 0.013 N 5 4 "C2'" A A 9 ? ? "C1'" A A 9 ? ? 1.476 1.526 -0.050 0.008 N 6 4 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.359 1.451 -0.092 0.013 N 7 5 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.360 1.451 -0.091 0.013 N 8 6 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.361 1.451 -0.090 0.013 N 9 7 "C2'" A A 9 ? ? "C1'" A A 9 ? ? 1.477 1.526 -0.049 0.008 N 10 7 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.358 1.451 -0.093 0.013 N 11 8 "O4'" A A 9 ? ? "C4'" A A 9 ? ? 1.359 1.451 -0.092 0.013 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 6 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 U _pdbx_validate_rmsd_angle.auth_seq_id_1 29 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 U _pdbx_validate_rmsd_angle.auth_seq_id_2 29 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 U _pdbx_validate_rmsd_angle.auth_seq_id_3 29 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.34 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 8 ? ? 0.052 'SIDE CHAIN' 2 1 C A 27 ? ? 0.061 'SIDE CHAIN' 3 2 A A 8 ? ? 0.058 'SIDE CHAIN' 4 2 C A 27 ? ? 0.062 'SIDE CHAIN' 5 3 A A 8 ? ? 0.059 'SIDE CHAIN' 6 3 C A 27 ? ? 0.062 'SIDE CHAIN' 7 4 A A 8 ? ? 0.052 'SIDE CHAIN' 8 4 C A 27 ? ? 0.066 'SIDE CHAIN' 9 5 A A 8 ? ? 0.061 'SIDE CHAIN' 10 5 C A 27 ? ? 0.064 'SIDE CHAIN' 11 6 A A 8 ? ? 0.060 'SIDE CHAIN' 12 7 A A 8 ? ? 0.053 'SIDE CHAIN' 13 7 C A 27 ? ? 0.061 'SIDE CHAIN' 14 8 A A 8 ? ? 0.061 'SIDE CHAIN' 15 8 C A 27 ? ? 0.060 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KZL _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KZL _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-100% 13C; U-100% 15N] Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA, 100% D2O' 1 '100% D2O' '1 mM [U-100% 13C; U-100% 15N] Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1 mM [U-100% 13C; U-100% 15N] Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA, 100% D2O' 3 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA-1' 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA-2' 1 ? mM '[U-100% 13C; U-100% 15N]' 2 'Specifier Domain and GA motif region of B. subtilis tyrS T box leader RNA-3' 1 ? mM '[U-100% 13C; U-100% 15N]' 3 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.8 ambient ? 301 K 2 ? 6.8 ? ? 288 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-13C HSQC' 1 2 1 '3D HCCH-TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '3D 1H-13C NOESY' 2 5 2 '2D 1H-15N HSQC' 2 6 2 '3D 1H-15N NOESY' 1 7 3 '2D 1H-13C HSQC' 1 8 1 '3D HCCH-COSY' 1 9 1 '3D HCN' 2 10 2 '2D 1H-1H NOESY' 1 11 1 '2D 1H-15N HSQC' 1 12 1 '2D 1H-13C ct-spin-echo difference' # _pdbx_nmr_refine.entry_id 2KZL _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.authors Varian _pdbx_nmr_software.classification collection _pdbx_nmr_software.name VnmrJ _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KZL 'double helix' 2KZL 'a-form double helix' 2KZL 'b-form double helix' 2KZL 'bulge loop' 2KZL 'mismatched base pair' 2KZL 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 55 1_555 0.575 0.140 1.922 53.133 1.428 -16.084 1 A_G1:C55_A A 1 ? A 55 ? 19 1 1 A G 2 1_555 A C 54 1_555 0.820 0.114 -1.285 -35.447 9.506 -8.008 2 A_G2:C54_A A 2 ? A 54 ? 19 1 1 A G 3 1_555 A C 53 1_555 0.608 0.137 -0.231 -8.977 10.848 -8.381 3 A_G3:C53_A A 3 ? A 53 ? 19 1 1 A A 4 1_555 A U 52 1_555 -0.482 -0.126 -0.081 -3.912 12.457 21.828 4 A_A4:U52_A A 4 ? A 52 ? ? 1 1 A G 5 1_555 A C 51 1_555 -0.490 -0.060 -2.231 -53.786 -11.481 12.502 5 A_G5:C51_A A 5 ? A 51 ? 19 1 1 A U 6 1_555 A A 50 1_555 1.137 -0.110 0.103 -14.017 -16.581 9.535 6 A_U6:A50_A A 6 ? A 50 ? 20 1 1 A A 8 1_555 A A 49 1_555 2.993 0.199 -1.380 -25.683 43.744 -30.601 7 A_A8:A49_A A 8 ? A 49 ? ? 1 1 A A 11 1_555 A G 48 1_555 -6.414 -4.194 0.100 -17.692 -4.416 -4.606 8 A_A11:G48_A A 11 ? A 48 ? 11 9 1 A U 12 1_555 A U 47 1_555 1.609 -1.271 0.137 -9.018 -2.858 -11.886 9 A_U12:U47_A A 12 ? A 47 ? ? ? 1 A U 13 1_555 A A 46 1_555 -0.053 0.178 -0.982 15.772 -17.776 -15.404 10 A_U13:A46_A A 13 ? A 46 ? 20 1 1 A G 14 1_555 A C 45 1_555 -1.031 -0.476 -0.287 3.680 -10.866 -11.915 11 A_G14:C45_A A 14 ? A 45 ? 19 1 1 A A 15 1_555 A U 44 1_555 -0.200 -0.076 1.163 32.579 -12.167 12.475 12 A_A15:U44_A A 15 ? A 44 ? 20 1 1 A G 16 1_555 A C 43 1_555 -1.481 -0.204 0.613 7.090 9.882 2.284 13 A_G16:C43_A A 16 ? A 43 ? 19 1 1 A A 17 1_555 A A 42 1_555 -3.720 0.201 -2.214 8.182 12.814 10.984 14 A_A17:A42_A A 17 ? A 42 ? ? 1 1 A A 20 1_555 A A 38 1_555 -4.387 5.325 -0.136 0.352 -3.405 -164.003 15 A_A20:A38_A A 20 ? A 38 ? 2 7 1 A U 22 1_555 A A 37 1_555 4.179 -2.080 0.176 2.536 1.149 -86.117 16 A_U22:A37_A A 22 ? A 37 ? 24 4 1 A A 23 1_555 A G 36 1_555 -6.486 -4.193 0.021 4.645 16.352 -6.267 17 A_A23:G36_A A 23 ? A 36 ? 11 10 1 A G 24 1_555 A C 35 1_555 -1.840 -0.629 0.113 -9.149 8.807 -6.727 18 A_G24:C35_A A 24 ? A 35 ? ? 1 1 A G 25 1_555 A C 34 1_555 0.460 0.161 -0.573 -14.157 -21.503 10.214 19 A_G25:C34_A A 25 ? A 34 ? 19 1 1 A A 26 1_555 A U 33 1_555 -0.336 0.319 -0.068 -15.138 12.616 -27.046 20 A_A26:U33_A A 26 ? A 33 ? ? ? 1 A C 27 1_555 A G 32 1_555 1.989 -0.513 -0.069 11.235 2.653 -1.117 21 A_C27:G32_A A 27 ? A 32 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 55 1_555 A G 2 1_555 A C 54 1_555 0.407 0.753 7.208 16.776 74.026 30.296 -4.749 0.894 3.658 69.709 -15.798 80.872 1 AA_G1G2:C54C55_AA A 1 ? A 55 ? A 2 ? A 54 ? 1 A G 2 1_555 A C 54 1_555 A G 3 1_555 A C 53 1_555 -0.243 1.351 3.401 -4.439 17.842 21.010 -2.338 -0.775 3.471 40.363 10.042 27.851 2 AA_G2G3:C53C54_AA A 2 ? A 54 ? A 3 ? A 53 ? 1 A G 3 1_555 A C 53 1_555 A A 4 1_555 A U 52 1_555 2.052 0.474 4.815 -4.754 0.654 21.462 0.890 -7.958 4.277 1.727 12.564 21.986 3 AA_G3A4:U52C53_AA A 3 ? A 53 ? A 4 ? A 52 ? 1 A A 4 1_555 A U 52 1_555 A G 5 1_555 A C 51 1_555 -0.310 0.469 6.424 15.808 12.478 25.898 -3.456 5.985 5.142 23.790 -30.139 32.701 4 AA_A4G5:C51U52_AA A 4 ? A 52 ? A 5 ? A 51 ? 1 A G 5 1_555 A C 51 1_555 A U 6 1_555 A A 50 1_555 -0.189 1.358 2.628 -15.731 1.891 45.200 1.553 -0.801 2.605 2.376 19.764 47.759 5 AA_G5U6:A50C51_AA A 5 ? A 51 ? A 6 ? A 50 ? 1 A U 6 1_555 A A 50 1_555 A A 8 1_555 A A 49 1_555 -0.648 -1.438 5.921 39.275 -4.075 31.768 -1.164 5.857 3.435 -5.436 -52.390 50.278 6 AA_U6A8:A49A50_AA A 6 ? A 50 ? A 8 ? A 49 ? 1 A A 8 1_555 A A 49 1_555 A A 11 1_555 A G 48 1_555 1.465 -3.362 4.432 14.555 -7.595 15.399 -3.749 5.591 5.120 -21.796 -41.770 22.473 7 AA_A8A11:G48A49_AA A 8 ? A 49 ? A 11 ? A 48 ? 1 A A 11 1_555 A G 48 1_555 A U 12 1_555 A U 47 1_555 0.131 -0.738 4.301 -0.613 -8.103 63.922 -0.234 -0.157 4.356 -7.622 0.577 64.382 8 AA_A11U12:U47G48_AA A 11 ? A 48 ? A 12 ? A 47 ? 1 A U 12 1_555 A U 47 1_555 A U 13 1_555 A A 46 1_555 -0.778 -0.797 2.449 11.114 10.641 23.947 -3.224 3.258 1.476 22.870 -23.888 28.403 9 AA_U12U13:A46U47_AA A 12 ? A 47 ? A 13 ? A 46 ? 1 A U 13 1_555 A A 46 1_555 A G 14 1_555 A C 45 1_555 -1.192 -0.033 3.792 -10.775 34.709 40.812 -2.672 0.492 3.113 41.325 12.829 54.127 10 AA_U13G14:C45A46_AA A 13 ? A 46 ? A 14 ? A 45 ? 1 A G 14 1_555 A C 45 1_555 A A 15 1_555 A U 44 1_555 3.056 -0.477 2.667 -7.124 -16.108 39.528 0.572 -4.697 2.140 -22.512 9.956 43.131 11 AA_G14A15:U44C45_AA A 14 ? A 45 ? A 15 ? A 44 ? 1 A A 15 1_555 A U 44 1_555 A G 16 1_555 A C 43 1_555 -2.661 -1.359 2.757 -16.346 11.772 37.427 -3.028 2.092 3.076 16.930 23.509 42.332 12 AA_A15G16:C43U44_AA A 15 ? A 44 ? A 16 ? A 43 ? 1 A G 16 1_555 A C 43 1_555 A A 17 1_555 A A 42 1_555 1.253 -2.069 4.220 14.517 -12.767 17.819 0.996 3.555 4.567 -31.515 -35.834 26.234 13 AA_G16A17:A42C43_AA A 16 ? A 43 ? A 17 ? A 42 ? 1 A A 20 1_555 A A 38 1_555 A U 22 1_555 A A 37 1_555 -2.654 2.260 -0.859 -125.420 -120.792 -97.700 -1.356 -1.094 -0.873 60.898 -63.231 -176.137 14 AA_A20U22:A37A38_AA A 20 ? A 38 ? A 22 ? A 37 ? 1 A U 22 1_555 A A 37 1_555 A A 23 1_555 A G 36 1_555 4.549 -0.373 3.840 0.880 10.375 -1.138 -18.733 26.681 0.405 -83.480 7.078 -10.474 15 AA_U22A23:G36A37_AA A 22 ? A 37 ? A 23 ? A 36 ? 1 A A 23 1_555 A G 36 1_555 A G 24 1_555 A C 35 1_555 0.087 -0.460 5.269 1.979 -6.736 53.209 0.173 0.105 5.287 -7.484 -2.199 53.637 16 AA_A23G24:C35G36_AA A 23 ? A 36 ? A 24 ? A 35 ? 1 A G 24 1_555 A C 35 1_555 A G 25 1_555 A C 34 1_555 0.584 -1.140 3.558 5.826 15.721 44.515 -2.751 -0.232 3.061 19.935 -7.387 47.417 17 AA_G24G25:C34C35_AA A 24 ? A 35 ? A 25 ? A 34 ? 1 A G 25 1_555 A C 34 1_555 A A 26 1_555 A U 33 1_555 -3.331 -0.456 2.599 -18.032 9.488 33.917 -1.831 2.743 3.621 14.732 27.999 39.413 18 AA_G25A26:U33C34_AA A 25 ? A 34 ? A 26 ? A 33 ? 1 A A 26 1_555 A U 33 1_555 A C 27 1_555 A G 32 1_555 -0.023 -1.438 2.516 -1.122 1.067 30.212 -2.921 -0.130 2.465 2.046 2.151 30.251 19 AA_A26C27:G32U33_AA A 26 ? A 33 ? A 27 ? A 32 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Varian INOVA 2 'Varian INOVA' # _atom_sites.entry_id 2KZL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_