data_2L08 # _entry.id 2L08 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L08 pdb_00002l08 10.2210/pdb2l08/pdb RCSB RCSB101792 ? ? BMRB 17033 ? ? WWPDB D_1000101792 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 17033 BMRB . unspecified HR4714B TargetDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L08 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-06-30 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mani, R.' 1 'Mao, L.' 2 'Ciccosanti, C.' 3 'Shastry, R.' 4 'Acton, T.B.' 5 'Xiao, R.' 6 'Swapna, G.V.T.' 7 'Everett, J.K.' 8 'Montelione, G.T.' 9 'Northeast Structural Genomics Consortium (NESG)' 10 # _citation.id primary _citation.title 'Solution NMR Structure of Nonsense mRNA reducing factor 3A from H. Sapiens, Northeast Structural Genomics Consortium Target HR4714B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mani, R.' 1 ? primary 'Mao, L.' 2 ? primary 'Ciccosanti, C.' 3 ? primary 'Shastry, R.' 4 ? primary 'Acton, T.B.' 5 ? primary 'Xiao, R.' 6 ? primary 'Swapna, G.V.T.' 7 ? primary 'Everett, J.K.' 8 ? primary 'Montelione, G.T.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Regulator of nonsense transcripts 3A' _entity.formula_weight 11596.175 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sequence database residues 70-155' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nonsense mRNA reducing factor 3A, Up-frameshift suppressor 3 homolog A, hUpf3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD SKGLEYPAVVEFAPFQK ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD SKGLEYPAVVEFAPFQK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR4714B # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MET n 1 12 VAL n 1 13 VAL n 1 14 ILE n 1 15 ARG n 1 16 ARG n 1 17 LEU n 1 18 PRO n 1 19 PRO n 1 20 GLY n 1 21 LEU n 1 22 THR n 1 23 LYS n 1 24 GLU n 1 25 GLN n 1 26 LEU n 1 27 GLU n 1 28 GLU n 1 29 GLN n 1 30 LEU n 1 31 ARG n 1 32 PRO n 1 33 LEU n 1 34 PRO n 1 35 ALA n 1 36 HIS n 1 37 ASP n 1 38 TYR n 1 39 PHE n 1 40 GLU n 1 41 PHE n 1 42 PHE n 1 43 ALA n 1 44 ALA n 1 45 ASP n 1 46 LEU n 1 47 SER n 1 48 LEU n 1 49 TYR n 1 50 PRO n 1 51 HIS n 1 52 LEU n 1 53 TYR n 1 54 SER n 1 55 ARG n 1 56 ALA n 1 57 TYR n 1 58 ILE n 1 59 ASN n 1 60 PHE n 1 61 ARG n 1 62 ASN n 1 63 PRO n 1 64 ASP n 1 65 ASP n 1 66 ILE n 1 67 LEU n 1 68 LEU n 1 69 PHE n 1 70 ARG n 1 71 ASP n 1 72 ARG n 1 73 PHE n 1 74 ASP n 1 75 GLY n 1 76 TYR n 1 77 ILE n 1 78 PHE n 1 79 LEU n 1 80 ASP n 1 81 SER n 1 82 LYS n 1 83 GLY n 1 84 LEU n 1 85 GLU n 1 86 TYR n 1 87 PRO n 1 88 ALA n 1 89 VAL n 1 90 VAL n 1 91 GLU n 1 92 PHE n 1 93 ALA n 1 94 PRO n 1 95 PHE n 1 96 GLN n 1 97 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UPF3A, RENT3A, UPF3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'peT 15-15C' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code REN3A_HUMAN _struct_ref.pdbx_db_accession Q9H1J1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVE FAPFQK ; _struct_ref.pdbx_align_begin 70 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L08 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9H1J1 _struct_ref_seq.db_align_beg 70 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 155 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2L08 MET A 1 ? UNP Q9H1J1 ? ? 'expression tag' 1 1 1 2L08 GLY A 2 ? UNP Q9H1J1 ? ? 'expression tag' 2 2 1 2L08 HIS A 3 ? UNP Q9H1J1 ? ? 'expression tag' 3 3 1 2L08 HIS A 4 ? UNP Q9H1J1 ? ? 'expression tag' 4 4 1 2L08 HIS A 5 ? UNP Q9H1J1 ? ? 'expression tag' 5 5 1 2L08 HIS A 6 ? UNP Q9H1J1 ? ? 'expression tag' 6 6 1 2L08 HIS A 7 ? UNP Q9H1J1 ? ? 'expression tag' 7 7 1 2L08 HIS A 8 ? UNP Q9H1J1 ? ? 'expression tag' 8 8 1 2L08 SER A 9 ? UNP Q9H1J1 ? ? 'expression tag' 9 9 1 2L08 HIS A 10 ? UNP Q9H1J1 ? ? 'expression tag' 10 10 1 2L08 MET A 11 ? UNP Q9H1J1 ? ? 'expression tag' 11 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-15N HSQC' 1 3 1 '2D 1H-13C HSQC' 1 4 1 '2D 1H-13C HSQC' 1 5 2 '2D 1H-13C HSQC' 1 6 1 '3D CBCA(CO)NH' 1 7 1 '3D HNCO' 1 8 1 '3D HNCA' 1 9 1 '3D HNCACB' 1 10 1 '3D HBHA(CO)NH' 1 11 1 '3D C(CO)NH-TOCSY' 1 12 1 '3D CCH-TOCSY' 1 13 2 '3D HNHA' 1 14 1 '3D simul NOESY' 1 15 1 '3D arom NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl, 10mM Tris-HCl' _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.82 mM [U-100% 13C; U-100% 15N] HR4714B, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.9 mM [U-10% 13C; U-99% 15N] HR4714B, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2L08 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Final structure quality (excluding 10 residue tag) determined using PSVS-v1.4: Ordered residues are defines as: 10-19,22-34,36-45,54-72,76-94. (a) RMSD (ordered residues) all backbone aroms: 0.6A. and heavy atoms 1.0A. (b) Ramachandran statistics for ordered residues: Most favored region: 85.1% Additionally favored region: 14.8% Generaously allowed region: 0.1% Disallowed region: 0.1%. (c) Procheck scores for ordered residues (RAW/Z): Phi/psi -0.73/-2.56, all -0.65/-3.84, (d) Molprobity clashscores (RAW/Z)22.41/-2.32 (e) RPF scores for the goodness fit to NOESY data: Recall: 89, Precision: 94, F-measure: 92, final dp-score - (f) RMS deviation for bond angles - 6.15, RMS deviation for bond lengths 0.01A. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2L08 _pdbx_nmr_details.text ;The Structure was obtained using triple resonance NMR spectroscopy for backbone and side chain assignments. Automated NOESY assignments were made using Autostructure and CYANA3.0. Dihedral angle constraints were obtained using TALOS. The structure calculation was done excluding the 10-residue N-terminal tag. Completeness of assignment excluding the tag: Backbone - 80%, Sidechain - 80%. Peaks for 13 residues in NHSQC spectra are missing due to line broadening. ; # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L08 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0.25 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 8.5 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 1.7 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L08 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 2.0.6 1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 2 'Huang, Tejero, Powers and Montelione' 'structure solution' AutoStructure 2.2.1 3 'Bahrami, Markley, Assadi, and Eghbalnia' 'chemical shift assignment' PINE ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ;HR4714B is a 97 residue protein consisiting of a 10 residue N-terminal tag. N-HSQC spectrum shows only 71 peaks out of the 87 peaks (excluding tag) that are expected. The line broeadening of the peaks occur from residue D45 to S54. Also, M11, R16, S81 NH's are missing from N-HSQC spectrum. The reason for line broadening is not known. ; _exptl.entry_id 2L08 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L08 _struct.title 'Solution NMR Structure of Nonsense mRNA reducing factor 3A from H. Sapiens, Northeast Structural Genomics Consortium Target HR4714B' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L08 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;NESG, Nonsense regulator, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, TRANSPORT PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? GLU A 27 ? THR A 22 GLU A 27 1 ? 6 HELX_P HELX_P2 2 ASN A 62 ? PHE A 73 ? ASN A 62 PHE A 73 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 36 ? TYR A 38 ? HIS A 36 TYR A 38 A 2 TYR A 57 ? PHE A 60 ? TYR A 57 PHE A 60 A 3 VAL A 12 ? ARG A 15 ? VAL A 12 ARG A 15 A 4 GLU A 85 ? PHE A 92 ? GLU A 85 PHE A 92 A 5 TYR A 76 ? LEU A 79 ? TYR A 76 LEU A 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 37 ? N ASP A 37 O ASN A 59 ? O ASN A 59 A 2 3 O ILE A 58 ? O ILE A 58 N VAL A 12 ? N VAL A 12 A 3 4 N VAL A 13 ? N VAL A 13 O GLU A 91 ? O GLU A 91 A 4 5 O TYR A 86 ? O TYR A 86 N PHE A 78 ? N PHE A 78 # _atom_sites.entry_id 2L08 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LYS 97 97 97 LYS LYS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2020-02-05 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Database references' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_spectrometer 3 3 'Structure model' struct_ref_seq_dif 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_spectrometer.model' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.01 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2L08 _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id HR4714B-1 0.82 ? mM '[U-100% 13C; U-100% 15N]' 1 HR4714B-2 0.9 ? mM '[U-10% 13C; U-99% 15N]' 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2L08 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1729 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 281 _pdbx_nmr_constraints.NOE_long_range_total_count 333 _pdbx_nmr_constraints.NOE_medium_range_total_count 536 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 471 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 108 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 108 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 5 ? ? 63.58 90.17 2 1 PRO A 34 ? ? -70.40 -72.55 3 1 PHE A 39 ? ? -108.39 -166.28 4 1 LEU A 48 ? ? 65.11 88.48 5 1 PRO A 50 ? ? -75.43 22.06 6 1 HIS A 51 ? ? 73.10 -63.87 7 1 ASP A 74 ? ? -64.08 91.49 8 1 PRO A 94 ? ? -53.90 98.67 9 2 HIS A 4 ? ? -82.75 43.99 10 2 HIS A 5 ? ? -102.74 45.54 11 2 ARG A 16 ? ? 62.66 77.25 12 2 PRO A 19 ? ? -63.60 85.82 13 2 LEU A 46 ? ? -55.65 108.49 14 3 HIS A 5 ? ? 64.21 80.19 15 3 ARG A 16 ? ? 70.71 45.59 16 3 LYS A 23 ? ? -39.95 -36.51 17 3 PRO A 32 ? ? -80.78 36.53 18 3 PRO A 34 ? ? -76.69 -75.73 19 3 HIS A 36 ? ? -177.23 -178.78 20 3 TYR A 49 ? ? 64.93 86.86 21 3 LEU A 52 ? ? 66.03 -72.75 22 3 SER A 54 ? ? -173.65 137.17 23 3 ASP A 74 ? ? -67.68 97.63 24 3 ALA A 88 ? ? -62.81 95.31 25 4 MET A 11 ? ? -168.20 104.47 26 4 PHE A 39 ? ? -118.86 -162.51 27 4 LEU A 48 ? ? -68.30 80.75 28 4 ASP A 74 ? ? -55.78 92.34 29 5 HIS A 3 ? ? -65.43 76.05 30 5 HIS A 4 ? ? 178.18 154.43 31 5 PRO A 32 ? ? -75.15 21.36 32 5 HIS A 36 ? ? 179.13 158.61 33 5 LEU A 46 ? ? -69.30 80.03 34 5 TYR A 49 ? ? 66.48 87.37 35 5 PRO A 50 ? ? -66.56 90.02 36 5 ARG A 61 ? ? -129.65 -56.41 37 5 ASP A 74 ? ? -67.06 86.20 38 5 PRO A 94 ? ? -66.99 9.49 39 5 PHE A 95 ? ? 63.55 -81.03 40 6 PRO A 50 ? ? -61.86 -172.54 41 6 HIS A 51 ? ? 73.00 -7.83 42 6 TYR A 53 ? ? -63.45 84.89 43 6 ILE A 66 ? ? -62.98 -73.78 44 7 SER A 9 ? ? -119.17 -169.16 45 7 PRO A 34 ? ? -76.45 -87.49 46 7 PHE A 39 ? ? -91.50 -152.44 47 7 PHE A 73 ? ? -143.12 -57.75 48 7 ASP A 74 ? ? 44.40 -70.72 49 8 TYR A 49 ? ? 60.12 70.11 50 8 ARG A 61 ? ? -143.07 -55.38 51 8 ARG A 72 ? ? -144.63 19.32 52 8 PHE A 73 ? ? -149.55 -56.24 53 8 ASP A 74 ? ? 43.49 -69.83 54 9 PRO A 32 ? ? -84.21 33.35 55 9 HIS A 36 ? ? -171.89 -173.97 56 9 PHE A 39 ? ? -88.38 -158.41 57 9 PRO A 50 ? ? -53.14 105.48 58 9 GLN A 96 ? ? -171.61 132.02 59 10 ALA A 35 ? ? -141.69 11.63 60 10 ALA A 44 ? ? -162.27 119.75 61 10 LEU A 48 ? ? -104.73 62.16 62 10 ASP A 74 ? ? -62.68 86.10 63 10 ASP A 80 ? ? -95.39 -154.16 64 11 HIS A 3 ? ? -76.21 31.91 65 11 HIS A 5 ? ? -110.06 76.67 66 11 ALA A 35 ? ? -158.62 66.76 67 11 LEU A 46 ? ? -68.55 82.21 68 11 PRO A 50 ? ? -78.23 47.06 69 11 ASP A 74 ? ? -74.60 26.64 70 11 GLN A 96 ? ? -91.60 -82.70 71 12 HIS A 36 ? ? -171.26 -172.81 72 12 PHE A 39 ? ? -101.23 -145.74 73 12 SER A 47 ? ? 73.94 -49.25 74 12 PRO A 50 ? ? -65.54 80.18 75 12 PHE A 73 ? ? -105.36 -88.22 76 12 ASP A 74 ? ? 39.76 101.48 77 12 ASP A 80 ? ? -60.33 -76.86 78 12 SER A 81 ? ? -163.15 -40.68 79 12 ALA A 88 ? ? -68.88 84.83 80 13 HIS A 6 ? ? -69.49 83.43 81 13 ARG A 16 ? ? 84.31 -5.32 82 13 PHE A 39 ? ? -103.18 -160.12 83 13 LEU A 46 ? ? -75.60 24.41 84 13 PRO A 50 ? ? -58.37 107.11 85 13 PHE A 73 ? ? -142.48 12.75 86 14 HIS A 3 ? ? 58.24 98.29 87 14 ARG A 16 ? ? 73.12 56.54 88 14 PRO A 19 ? ? -60.21 87.76 89 14 ALA A 35 ? ? -161.04 -158.56 90 14 HIS A 36 ? ? 75.05 152.60 91 14 LEU A 48 ? ? -69.75 -179.62 92 14 TYR A 49 ? ? 60.91 74.24 93 14 PRO A 50 ? ? -62.90 96.67 94 14 PHE A 73 ? ? -88.39 -83.60 95 14 ASP A 74 ? ? 33.51 78.16 96 14 ALA A 88 ? ? -65.69 92.60 97 15 SER A 47 ? ? 72.55 -37.90 98 15 TYR A 49 ? ? 53.61 92.14 99 15 PRO A 50 ? ? -65.00 -174.59 100 15 ASP A 74 ? ? -31.47 102.71 101 16 ALA A 35 ? ? -162.78 119.33 102 16 HIS A 36 ? ? 178.84 165.64 103 16 LEU A 48 ? ? -64.58 91.47 104 16 TYR A 49 ? ? 56.57 80.75 105 16 HIS A 51 ? ? 72.95 -2.74 106 16 LEU A 68 ? ? -74.41 -70.78 107 16 ASP A 80 ? ? -88.18 -159.14 108 16 PRO A 94 ? ? -53.24 99.68 109 17 HIS A 6 ? ? 58.43 109.37 110 17 HIS A 7 ? ? -43.64 104.18 111 17 HIS A 8 ? ? -127.25 -166.36 112 17 PRO A 19 ? ? -53.34 99.22 113 17 PRO A 32 ? ? -80.33 31.03 114 17 ALA A 35 ? ? -168.11 86.97 115 17 SER A 47 ? ? -178.32 -92.60 116 17 LEU A 48 ? ? 37.22 -90.42 117 17 ASP A 74 ? ? -67.26 89.07 118 17 GLN A 96 ? ? -147.71 -75.73 119 18 ARG A 16 ? ? 72.78 30.52 120 18 PRO A 32 ? ? -80.52 37.04 121 18 HIS A 36 ? ? -167.56 -165.73 122 18 PHE A 39 ? ? -99.48 -155.35 123 18 TYR A 49 ? ? 69.19 88.47 124 18 PHE A 73 ? ? -140.63 14.27 125 19 HIS A 4 ? ? -65.79 87.28 126 19 ARG A 16 ? ? 74.12 30.91 127 19 ALA A 35 ? ? -152.36 71.99 128 19 PHE A 39 ? ? -86.52 -85.32 129 19 LEU A 46 ? ? -79.25 43.18 130 19 ASP A 74 ? ? -58.64 92.41 131 19 PRO A 94 ? ? -58.86 95.16 132 20 ALA A 35 ? ? -146.39 28.78 133 20 SER A 47 ? ? 68.35 -24.18 134 20 LEU A 48 ? ? -63.13 -78.34 135 20 LEU A 68 ? ? -85.47 -70.64 136 20 ASP A 80 ? ? -107.80 -153.83 137 20 PHE A 95 ? ? -97.96 38.17 138 20 GLN A 96 ? ? -68.86 -79.60 #