data_2L8C # _entry.id 2L8C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L8C pdb_00002l8c 10.2210/pdb2l8c/pdb RCSB RCSB102083 ? ? BMRB 17401 ? 10.13018/BMR17401 WWPDB D_1000102083 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-02-15 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_entity_src_syn 3 3 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_database_status 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 5 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L8C _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-07 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_id 17401 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parkesh, R.' 1 'Fountain, M.A.' 2 'Disney, M.D.' 3 # _citation.id primary _citation.title ;NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)(2) Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 50 _citation.page_first 599 _citation.page_last 601 _citation.year 2011 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21204525 _citation.pdbx_database_id_DOI 10.1021/bi101896j # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parkesh, R.' 1 ? primary 'Fountain, M.' 2 ? primary 'Disney, M.D.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') ; _entity.formula_weight 2862.759 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCGCUGCGG _entity_poly.pdbx_seq_one_letter_code_can CCGCUGCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 C n 1 5 U n 1 6 G n 1 7 C n 1 8 G n 1 9 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n B 1 1 C 1 10 10 C C B . n B 1 2 C 2 11 11 C C B . n B 1 3 G 3 12 12 G G B . n B 1 4 C 4 13 13 C C B . n B 1 5 U 5 14 14 U U B . n B 1 6 G 6 15 15 G G B . n B 1 7 C 7 16 16 C C B . n B 1 8 G 8 17 17 G G B . n B 1 9 G 9 18 18 G G B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L8C _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L8C _struct.title ;NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs ; _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L8C _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'UU mismatch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2L8C _struct_ref.pdbx_db_accession 2L8C _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2L8C A 1 ? 9 ? 2L8C 1 ? 9 ? 1 9 2 1 2L8C B 1 ? 9 ? 2L8C 10 ? 18 ? 10 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 2 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 4 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 6 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 7 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C4 A C 1 ? ? N4 A C 1 ? ? 1.270 1.335 -0.065 0.009 N 2 1 C5 A G 3 ? ? N7 A G 3 ? ? 1.437 1.388 0.049 0.006 N 3 1 C4 A C 4 ? ? N4 A C 4 ? ? 1.261 1.335 -0.074 0.009 N 4 1 N1 A C 4 ? ? C6 A C 4 ? ? 1.414 1.367 0.047 0.006 N 5 1 P A G 6 ? ? "O5'" A G 6 ? ? 1.661 1.593 0.068 0.010 N 6 1 "C5'" A G 6 ? ? "C4'" A G 6 ? ? 1.599 1.509 0.090 0.012 N 7 1 "C3'" A G 6 ? ? "C2'" A G 6 ? ? 1.610 1.525 0.085 0.011 N 8 1 N3 A G 8 ? ? C4 A G 8 ? ? 1.423 1.350 0.073 0.007 N 9 1 N7 A G 8 ? ? C8 A G 8 ? ? 1.348 1.305 0.043 0.006 N 10 1 "C2'" A G 9 ? ? "C1'" A G 9 ? ? 1.447 1.526 -0.079 0.008 N 11 1 C4 A G 9 ? ? C5 A G 9 ? ? 1.430 1.379 0.051 0.007 N 12 1 "C3'" B C 10 ? ? "C2'" B C 10 ? ? 1.603 1.525 0.078 0.011 N 13 1 P B C 11 ? ? "O5'" B C 11 ? ? 1.528 1.593 -0.065 0.010 N 14 1 "C5'" B C 11 ? ? "C4'" B C 11 ? ? 1.630 1.509 0.121 0.012 N 15 1 C4 B C 11 ? ? N4 B C 11 ? ? 1.266 1.335 -0.069 0.009 N 16 1 C4 B G 12 ? ? C5 B G 12 ? ? 1.443 1.379 0.064 0.007 N 17 1 C4 B C 13 ? ? N4 B C 13 ? ? 1.413 1.335 0.078 0.009 N 18 1 C2 B C 13 ? ? N3 B C 13 ? ? 1.275 1.353 -0.078 0.008 N 19 1 "C3'" B G 15 ? ? "C2'" B G 15 ? ? 1.444 1.523 -0.079 0.011 N 20 1 C2 B G 15 ? ? N2 B G 15 ? ? 1.278 1.341 -0.063 0.010 N 21 1 "C2'" B C 16 ? ? "C1'" B C 16 ? ? 1.597 1.529 0.068 0.011 N 22 1 C2 B G 17 ? ? N2 B G 17 ? ? 1.277 1.341 -0.064 0.010 N 23 1 N3 B G 18 ? ? C4 B G 18 ? ? 1.397 1.350 0.047 0.007 N 24 1 C6 B G 18 ? ? N1 B G 18 ? ? 1.340 1.391 -0.051 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 1 ? ? "C4'" A C 1 ? ? "C3'" A C 1 ? ? 111.72 106.10 5.62 0.80 N 2 1 "C5'" A C 1 ? ? "C4'" A C 1 ? ? "O4'" A C 1 ? ? 117.88 109.80 8.08 0.90 N 3 1 "C1'" A C 1 ? ? "O4'" A C 1 ? ? "C4'" A C 1 ? ? 103.65 109.70 -6.05 0.70 N 4 1 "C4'" A C 1 ? ? "C3'" A C 1 ? ? "C2'" A C 1 ? ? 96.14 102.60 -6.46 1.00 N 5 1 "O5'" A C 2 ? ? "C5'" A C 2 ? ? "C4'" A C 2 ? ? 125.33 111.70 13.63 1.90 N 6 1 "C1'" A C 2 ? ? "O4'" A C 2 ? ? "C4'" A C 2 ? ? 103.60 109.70 -6.10 0.70 N 7 1 "C3'" A C 2 ? ? "C2'" A C 2 ? ? "C1'" A C 2 ? ? 95.25 101.30 -6.05 0.70 N 8 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 122.57 108.50 14.07 0.70 N 9 1 C2 A C 2 ? ? N3 A C 2 ? ? C4 A C 2 ? ? 116.55 119.90 -3.35 0.50 N 10 1 N3 A C 2 ? ? C4 A C 2 ? ? C5 A C 2 ? ? 124.39 121.90 2.49 0.40 N 11 1 C6 A G 3 ? ? N1 A G 3 ? ? C2 A G 3 ? ? 119.05 125.10 -6.05 0.60 N 12 1 N1 A G 3 ? ? C2 A G 3 ? ? N3 A G 3 ? ? 129.25 123.90 5.35 0.60 N 13 1 C5 A G 3 ? ? C6 A G 3 ? ? N1 A G 3 ? ? 114.79 111.50 3.29 0.50 N 14 1 N3 A G 3 ? ? C2 A G 3 ? ? N2 A G 3 ? ? 113.75 119.90 -6.15 0.70 N 15 1 C5 A G 3 ? ? C6 A G 3 ? ? O6 A G 3 ? ? 124.30 128.60 -4.30 0.60 N 16 1 "C5'" A C 4 ? ? "C4'" A C 4 ? ? "O4'" A C 4 ? ? 118.66 109.80 8.86 0.90 N 17 1 C6 A C 4 ? ? N1 A C 4 ? ? C2 A C 4 ? ? 117.45 120.30 -2.85 0.40 N 18 1 N3 A C 4 ? ? C2 A C 4 ? ? O2 A C 4 ? ? 115.29 121.90 -6.61 0.70 N 19 1 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 113.27 118.00 -4.73 0.70 N 20 1 N3 A U 5 ? ? C4 A U 5 ? ? C5 A U 5 ? ? 109.06 114.60 -5.54 0.60 N 21 1 C4 A U 5 ? ? C5 A U 5 ? ? C6 A U 5 ? ? 127.63 119.70 7.93 0.60 N 22 1 C5 A U 5 ? ? C6 A U 5 ? ? N1 A U 5 ? ? 116.16 122.70 -6.54 0.50 N 23 1 C2 A G 6 ? ? N3 A G 6 ? ? C4 A G 6 ? ? 115.71 111.90 3.81 0.50 N 24 1 C5 A G 6 ? ? C6 A G 6 ? ? N1 A G 6 ? ? 115.74 111.50 4.24 0.50 N 25 1 C8 A G 6 ? ? N9 A G 6 ? ? C4 A G 6 ? ? 103.57 106.40 -2.83 0.40 N 26 1 N9 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 108.93 105.40 3.53 0.40 N 27 1 C6 A G 6 ? ? C5 A G 6 ? ? N7 A G 6 ? ? 134.98 130.40 4.58 0.60 N 28 1 N1 A G 6 ? ? C6 A G 6 ? ? O6 A G 6 ? ? 114.29 119.90 -5.61 0.60 N 29 1 "O4'" A C 7 ? ? "C1'" A C 7 ? ? N1 A C 7 ? ? 113.73 108.50 5.23 0.70 N 30 1 C6 A C 7 ? ? N1 A C 7 ? ? C2 A C 7 ? ? 116.00 120.30 -4.30 0.40 N 31 1 N3 A C 7 ? ? C4 A C 7 ? ? C5 A C 7 ? ? 118.94 121.90 -2.96 0.40 N 32 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.68 108.50 6.18 0.70 N 33 1 C4 A G 8 ? ? C5 A G 8 ? ? N7 A G 8 ? ? 114.96 110.80 4.16 0.40 N 34 1 C5 A G 8 ? ? N7 A G 8 ? ? C8 A G 8 ? ? 99.59 104.30 -4.71 0.50 N 35 1 C4 A G 9 ? ? C5 A G 9 ? ? C6 A G 9 ? ? 113.76 118.80 -5.04 0.60 N 36 1 C5 A G 9 ? ? C6 A G 9 ? ? N1 A G 9 ? ? 115.79 111.50 4.29 0.50 N 37 1 C5 A G 9 ? ? N7 A G 9 ? ? C8 A G 9 ? ? 100.93 104.30 -3.37 0.50 N 38 1 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 114.24 119.90 -5.66 0.60 N 39 1 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 113.67 108.50 5.17 0.70 N 40 1 C6 B C 10 ? ? N1 B C 10 ? ? C2 B C 10 ? ? 117.60 120.30 -2.70 0.40 N 41 1 C2 B C 10 ? ? N3 B C 10 ? ? C4 B C 10 ? ? 116.74 119.90 -3.16 0.50 N 42 1 N3 B C 10 ? ? C4 B C 10 ? ? C5 B C 10 ? ? 125.96 121.90 4.06 0.40 N 43 1 C4 B C 10 ? ? C5 B C 10 ? ? C6 B C 10 ? ? 113.83 117.40 -3.57 0.50 N 44 1 N3 B C 10 ? ? C2 B C 10 ? ? O2 B C 10 ? ? 116.72 121.90 -5.18 0.70 N 45 1 C5 B C 10 ? ? C4 B C 10 ? ? N4 B C 10 ? ? 115.39 120.20 -4.81 0.70 N 46 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 115.83 108.50 7.33 0.70 N 47 1 C6 B C 11 ? ? N1 B C 11 ? ? C2 B C 11 ? ? 124.54 120.30 4.24 0.40 N 48 1 C2 B C 11 ? ? N3 B C 11 ? ? C4 B C 11 ? ? 116.65 119.90 -3.25 0.50 N 49 1 N3 B C 11 ? ? C4 B C 11 ? ? C5 B C 11 ? ? 127.75 121.90 5.85 0.40 N 50 1 C5 B C 11 ? ? C6 B C 11 ? ? N1 B C 11 ? ? 117.18 121.00 -3.82 0.50 N 51 1 N3 B C 11 ? ? C4 B C 11 ? ? N4 B C 11 ? ? 106.87 118.00 -11.13 0.70 N 52 1 "C5'" B G 12 ? ? "C4'" B G 12 ? ? "O4'" B G 12 ? ? 119.56 109.80 9.76 0.90 N 53 1 C6 B G 12 ? ? N1 B G 12 ? ? C2 B G 12 ? ? 120.94 125.10 -4.16 0.60 N 54 1 N1 B G 12 ? ? C2 B G 12 ? ? N3 B G 12 ? ? 130.12 123.90 6.22 0.60 N 55 1 C4 B G 12 ? ? C5 B G 12 ? ? N7 B G 12 ? ? 108.31 110.80 -2.49 0.40 N 56 1 "C1'" B C 13 ? ? "O4'" B C 13 ? ? "C4'" B C 13 ? ? 104.70 109.70 -5.00 0.70 N 57 1 "O4'" B U 14 ? ? "C1'" B U 14 ? ? N1 B U 14 ? ? 117.33 108.50 8.83 0.70 N 58 1 C2 B U 14 ? ? N3 B U 14 ? ? C4 B U 14 ? ? 121.75 127.00 -5.25 0.60 N 59 1 C5 B U 14 ? ? C4 B U 14 ? ? O4 B U 14 ? ? 122.17 125.90 -3.73 0.60 N 60 1 "C1'" B G 15 ? ? "O4'" B G 15 ? ? "C4'" B G 15 ? ? 104.71 109.70 -4.99 0.70 N 61 1 C2 B G 15 ? ? N3 B G 15 ? ? C4 B G 15 ? ? 115.61 111.90 3.71 0.50 N 62 1 C4 B G 15 ? ? C5 B G 15 ? ? C6 B G 15 ? ? 114.80 118.80 -4.00 0.60 N 63 1 C5 B G 15 ? ? C6 B G 15 ? ? N1 B G 15 ? ? 115.54 111.50 4.04 0.50 N 64 1 C4 B G 15 ? ? C5 B G 15 ? ? N7 B G 15 ? ? 114.15 110.80 3.35 0.40 N 65 1 N1 B G 15 ? ? C6 B G 15 ? ? O6 B G 15 ? ? 111.99 119.90 -7.91 0.60 N 66 1 "O4'" B C 16 ? ? "C4'" B C 16 ? ? "C3'" B C 16 ? ? 111.58 106.10 5.48 0.80 N 67 1 "C1'" B C 16 ? ? "O4'" B C 16 ? ? "C4'" B C 16 ? ? 102.07 109.70 -7.63 0.70 N 68 1 N3 B C 16 ? ? C4 B C 16 ? ? N4 B C 16 ? ? 110.64 118.00 -7.36 0.70 N 69 1 C5 B C 16 ? ? C4 B C 16 ? ? N4 B C 16 ? ? 127.58 120.20 7.38 0.70 N 70 1 N1 B G 17 ? ? C2 B G 17 ? ? N3 B G 17 ? ? 128.32 123.90 4.42 0.60 N 71 1 C2 B G 17 ? ? N3 B G 17 ? ? C4 B G 17 ? ? 108.36 111.90 -3.54 0.50 N 72 1 C4 B G 17 ? ? C5 B G 17 ? ? N7 B G 17 ? ? 107.47 110.80 -3.33 0.40 N 73 1 C8 B G 17 ? ? N9 B G 17 ? ? C4 B G 17 ? ? 103.37 106.40 -3.03 0.40 N 74 1 N9 B G 17 ? ? C4 B G 17 ? ? C5 B G 17 ? ? 110.40 105.40 5.00 0.40 N 75 1 N3 B G 17 ? ? C4 B G 17 ? ? N9 B G 17 ? ? 121.50 126.00 -4.50 0.60 N 76 1 "O4'" B G 18 ? ? "C4'" B G 18 ? ? "C3'" B G 18 ? ? 112.96 106.10 6.86 0.80 N 77 1 "C1'" B G 18 ? ? "O4'" B G 18 ? ? "C4'" B G 18 ? ? 99.58 109.70 -10.12 0.70 N 78 1 "O4'" B G 18 ? ? "C1'" B G 18 ? ? "C2'" B G 18 ? ? 114.01 107.60 6.41 0.90 N 79 1 C6 B G 18 ? ? N1 B G 18 ? ? C2 B G 18 ? ? 120.30 125.10 -4.80 0.60 N 80 1 C4 B G 18 ? ? C5 B G 18 ? ? C6 B G 18 ? ? 113.47 118.80 -5.33 0.60 N 81 1 C5 B G 18 ? ? C6 B G 18 ? ? N1 B G 18 ? ? 119.38 111.50 7.88 0.50 N 82 1 C5 B G 18 ? ? C6 B G 18 ? ? O6 B G 18 ? ? 121.77 128.60 -6.83 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C A 1 ? ? 0.065 'SIDE CHAIN' 2 1 C A 4 ? ? 0.149 'SIDE CHAIN' 3 1 G A 9 ? ? 0.050 'SIDE CHAIN' 4 1 C B 11 ? ? 0.071 'SIDE CHAIN' 5 1 G B 12 ? ? 0.087 'SIDE CHAIN' 6 1 G B 15 ? ? 0.083 'SIDE CHAIN' 7 1 C B 16 ? ? 0.119 'SIDE CHAIN' 8 1 G B 17 ? ? 0.074 'SIDE CHAIN' 9 1 G B 18 ? ? 0.101 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 25 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L8C _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L8C _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.contents ;1.5 mM RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3'), 100% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '100% D2O' # _pdbx_nmr_exptl_sample.component ;RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3')-1 ; _pdbx_nmr_exptl_sample.concentration 1.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 313 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' # _pdbx_nmr_refine.entry_id 2L8C _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'geometry optimization' CYANA 2.1 1 Goddard 'chemical shift assignment' Sparky 3.111 2 Goddard 'data analysis' Sparky 3.111 3 Goddard 'peak picking' Sparky 3.111 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' refinement Amber 11 5 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' 'structure solution' Amber 11 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 G OP3 O N N 36 G P P N N 37 G OP1 O N N 38 G OP2 O N N 39 G "O5'" O N N 40 G "C5'" C N N 41 G "C4'" C N R 42 G "O4'" O N N 43 G "C3'" C N S 44 G "O3'" O N N 45 G "C2'" C N R 46 G "O2'" O N N 47 G "C1'" C N R 48 G N9 N Y N 49 G C8 C Y N 50 G N7 N Y N 51 G C5 C Y N 52 G C6 C N N 53 G O6 O N N 54 G N1 N N N 55 G C2 C N N 56 G N2 N N N 57 G N3 N N N 58 G C4 C Y N 59 G HOP3 H N N 60 G HOP2 H N N 61 G "H5'" H N N 62 G "H5''" H N N 63 G "H4'" H N N 64 G "H3'" H N N 65 G "HO3'" H N N 66 G "H2'" H N N 67 G "HO2'" H N N 68 G "H1'" H N N 69 G H8 H N N 70 G H1 H N N 71 G H21 H N N 72 G H22 H N N 73 U OP3 O N N 74 U P P N N 75 U OP1 O N N 76 U OP2 O N N 77 U "O5'" O N N 78 U "C5'" C N N 79 U "C4'" C N R 80 U "O4'" O N N 81 U "C3'" C N S 82 U "O3'" O N N 83 U "C2'" C N R 84 U "O2'" O N N 85 U "C1'" C N R 86 U N1 N N N 87 U C2 C N N 88 U O2 O N N 89 U N3 N N N 90 U C4 C N N 91 U O4 O N N 92 U C5 C N N 93 U C6 C N N 94 U HOP3 H N N 95 U HOP2 H N N 96 U "H5'" H N N 97 U "H5''" H N N 98 U "H4'" H N N 99 U "H3'" H N N 100 U "HO3'" H N N 101 U "H2'" H N N 102 U "HO2'" H N N 103 U "H1'" H N N 104 U H3 H N N 105 U H5 H N N 106 U H6 H N N 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 U OP3 P sing N N 77 U OP3 HOP3 sing N N 78 U P OP1 doub N N 79 U P OP2 sing N N 80 U P "O5'" sing N N 81 U OP2 HOP2 sing N N 82 U "O5'" "C5'" sing N N 83 U "C5'" "C4'" sing N N 84 U "C5'" "H5'" sing N N 85 U "C5'" "H5''" sing N N 86 U "C4'" "O4'" sing N N 87 U "C4'" "C3'" sing N N 88 U "C4'" "H4'" sing N N 89 U "O4'" "C1'" sing N N 90 U "C3'" "O3'" sing N N 91 U "C3'" "C2'" sing N N 92 U "C3'" "H3'" sing N N 93 U "O3'" "HO3'" sing N N 94 U "C2'" "O2'" sing N N 95 U "C2'" "C1'" sing N N 96 U "C2'" "H2'" sing N N 97 U "O2'" "HO2'" sing N N 98 U "C1'" N1 sing N N 99 U "C1'" "H1'" sing N N 100 U N1 C2 sing N N 101 U N1 C6 sing N N 102 U C2 O2 doub N N 103 U C2 N3 sing N N 104 U N3 C4 sing N N 105 U N3 H3 sing N N 106 U C4 O4 doub N N 107 U C4 C5 sing N N 108 U C5 C6 doub N N 109 U C5 H5 sing N N 110 U C6 H6 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2L8C 'double helix' 2L8C 'a-form double helix' 2L8C 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 9 1_555 -0.098 -0.124 -0.621 3.543 -7.807 -3.662 1 A_C1:G18_B A 1 ? B 18 ? 19 1 1 A C 2 1_555 B G 8 1_555 -0.056 -0.133 -0.183 -1.098 -10.631 -0.044 2 A_C2:G17_B A 2 ? B 17 ? 19 1 1 A G 3 1_555 B C 7 1_555 -0.289 -0.012 0.491 8.764 -1.629 1.579 3 A_G3:C16_B A 3 ? B 16 ? 19 1 1 A C 4 1_555 B G 6 1_555 0.572 -0.043 -0.105 -3.157 -11.626 1.422 4 A_C4:G15_B A 4 ? B 15 ? 19 1 1 A G 6 1_555 B C 4 1_555 0.100 -0.027 0.250 -7.732 -10.226 -0.461 5 A_G6:C13_B A 6 ? B 13 ? 19 1 1 A C 7 1_555 B G 3 1_555 0.580 0.189 -0.555 26.584 -21.533 0.304 6 A_C7:G12_B A 7 ? B 12 ? 19 1 1 A G 8 1_555 B C 2 1_555 -0.231 -0.215 -0.259 -12.359 0.214 -4.105 7 A_G8:C11_B A 8 ? B 11 ? 19 1 1 A G 9 1_555 B C 1 1_555 -0.306 -0.079 -0.486 -11.590 -15.443 1.991 8 A_G9:C10_B A 9 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 9 1_555 A C 2 1_555 B G 8 1_555 0.348 -2.329 3.792 -3.934 2.307 25.767 -5.847 -1.966 3.482 5.123 8.734 26.161 1 AA_C1C2:G17G18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A C 2 1_555 B G 8 1_555 A G 3 1_555 B C 7 1_555 0.527 -1.348 3.031 -1.127 9.750 33.654 -3.515 -1.023 2.536 16.411 1.898 35.016 2 AA_C2G3:C16G17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A G 3 1_555 B C 7 1_555 A C 4 1_555 B G 6 1_555 -0.163 -1.950 3.557 4.834 13.408 30.631 -5.470 1.042 2.461 23.828 -8.591 33.713 3 AA_G3C4:G15C16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A C 4 1_555 B G 6 1_555 A G 6 1_555 B C 4 1_555 0.831 -3.608 6.240 6.708 9.993 63.231 -4.182 -0.251 5.727 9.441 -6.337 64.250 4 AA_C4G6:C13G15_BB A 4 ? B 15 ? A 6 ? B 13 ? 1 A G 6 1_555 B C 4 1_555 A C 7 1_555 B G 3 1_555 0.645 -3.102 2.626 4.322 -1.434 20.941 -7.848 -0.236 2.901 -3.886 -11.713 21.425 5 AA_G6C7:G12C13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A C 7 1_555 B G 3 1_555 A G 8 1_555 B C 2 1_555 -2.184 -2.668 4.208 -10.595 15.932 24.976 -8.511 1.660 2.758 31.587 21.006 31.370 6 AA_C7G8:C11G12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A G 8 1_555 B C 2 1_555 A G 9 1_555 B C 1 1_555 -0.257 -1.736 3.391 3.145 4.413 30.650 -4.077 1.078 3.076 8.267 -5.892 31.114 7 AA_G8G9:C10C11_BB A 8 ? B 11 ? A 9 ? B 10 ? # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _atom_sites.entry_id 2L8C _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_