data_2L8P # _entry.id 2L8P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L8P pdb_00002l8p 10.2210/pdb2l8p/pdb RCSB RCSB102096 ? ? BMRB 17422 ? 10.13018/BMR17422 WWPDB D_1000102096 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L8P _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-22 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_id 17422 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Julien, O.' 1 'Beadle, J.R.' 2 'Magee, W.C.' 3 'Chatterjee, S.' 4 'Hostetler, K.Y.' 5 'Evans, D.H.' 6 'Sykes, B.D.' 7 # _citation.id primary _citation.title 'Solution structure of a DNA duplex containing the potent anti-poxvirus agent cidofovir.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 2264 _citation.page_last 2274 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21280608 _citation.pdbx_database_id_DOI 10.1021/ja109823e # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Julien, O.' 1 ? primary 'Beadle, J.R.' 2 ? primary 'Magee, W.C.' 3 ? primary 'Chatterjee, S.' 4 ? primary 'Hostetler, K.Y.' 5 ? primary 'Evans, D.H.' 6 ? primary 'Sykes, B.D.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*AP*TP*GP*(L8P)P*TP*AP*CP*GP*C)-3') ; 3595.358 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*GP*TP*AP*GP*CP*AP*TP*GP*CP*G)-3') ; 3703.416 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DA)(DT)(DG)(L8P)(DT)(DA)(DC)(DG)(DC)' CGCATGXTACGC A ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DT)(DA)(DG)(DC)(DA)(DT)(DG)(DC)(DG)' GCGTAGCATGCG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DA n 1 5 DT n 1 6 DG n 1 7 L8P n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DC n 2 1 DG n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DC n 2 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 L8P non-polymer . '({[(2S)-1-(4-amino-2-oxopyrimidin-1(2H)-yl)-3-hydroxypropan-2-yl]oxy}methyl)phosphonic acid' Cidofovir 'C8 H14 N3 O6 P' 279.187 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 L8P 7 7 7 L8P L8P A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DC 2 14 14 DC DC B . n B 2 3 DG 3 15 15 DG DG B . n B 2 4 DT 4 16 16 DT DT B . n B 2 5 DA 5 17 17 DA DA B . n B 2 6 DG 6 18 18 DG DG B . n B 2 7 DC 7 19 19 DC DC B . n B 2 8 DA 8 20 20 DA DA B . n B 2 9 DT 9 21 21 DT DT B . n B 2 10 DG 10 22 22 DG DG B . n B 2 11 DC 11 23 23 DC DC B . n B 2 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 2 2 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 3 3 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 4 4 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 5 5 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 6 6 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 7 7 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 8 8 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 9 9 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 10 10 Y 1 A L8P 7 ? O6 ? A L8P 7 O6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L8P _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L8P _struct.title 'Solution Structure of a DNA Duplex Containing the Potent Anti-Poxvirus Agent Cidofovir' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L8P _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, poxvirus, HPMPC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2L8P 2L8P 1 ? ? ? 2 PDB 2L8P 2L8P 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2L8P A 1 ? 12 ? 2L8P 1 ? 12 ? 1 12 2 2 2L8P B 1 ? 12 ? 2L8P 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 6 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 9 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 9 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 10 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 10 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 10 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 11 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.496 1.607 -0.111 0.012 Y 2 1 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.556 1.512 0.044 0.007 N 3 2 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.494 1.607 -0.113 0.012 Y 4 3 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.497 1.607 -0.110 0.012 Y 5 3 "C5'" B DA 20 ? ? "C4'" B DA 20 ? ? 1.561 1.512 0.049 0.007 N 6 4 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.497 1.607 -0.110 0.012 Y 7 5 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.497 1.607 -0.110 0.012 Y 8 5 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.554 1.512 0.042 0.007 N 9 6 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.496 1.607 -0.111 0.012 Y 10 7 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.497 1.607 -0.110 0.012 Y 11 8 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.497 1.607 -0.110 0.012 Y 12 8 "C5'" B DG 13 ? ? "C4'" B DG 13 ? ? 1.555 1.512 0.043 0.007 N 13 9 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.495 1.607 -0.112 0.012 Y 14 10 "O3'" A L8P 7 ? ? P A DT 8 ? ? 1.498 1.607 -0.109 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.69 121.90 -5.21 0.70 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.66 108.30 5.36 0.30 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.01 108.30 3.71 0.30 N 4 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.60 118.90 3.70 0.60 N 5 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.43 121.90 -5.47 0.70 N 6 1 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.83 117.00 -3.17 0.50 N 7 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.08 117.70 3.38 0.50 N 8 1 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.86 118.60 -4.74 0.60 N 9 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.57 108.30 3.27 0.30 N 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.32 108.30 4.02 0.30 N 11 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.57 108.30 3.27 0.30 N 12 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.30 108.30 2.00 0.30 N 13 1 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.77 117.00 -3.23 0.50 N 14 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.38 117.70 3.68 0.50 N 15 1 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.81 118.60 -4.79 0.60 N 16 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.63 108.30 2.33 0.30 N 17 1 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.77 121.90 -5.13 0.70 N 18 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.47 108.30 3.17 0.30 N 19 1 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.36 108.30 3.06 0.30 N 20 1 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.77 121.90 -5.13 0.70 N 21 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.19 108.30 2.89 0.30 N 22 1 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.70 108.30 2.40 0.30 N 23 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.57 118.90 3.67 0.60 N 24 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.51 121.90 -5.39 0.70 N 25 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.19 108.30 1.89 0.30 N 26 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.60 108.30 3.30 0.30 N 27 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.68 117.00 -3.32 0.50 N 28 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.03 117.70 3.33 0.50 N 29 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.66 118.60 -4.94 0.60 N 30 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.56 108.30 2.26 0.30 N 31 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.64 108.30 3.34 0.30 N 32 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 122.64 118.90 3.74 0.60 N 33 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.28 121.90 -5.62 0.70 N 34 1 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 111.26 108.30 2.96 0.30 N 35 1 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.40 117.70 3.70 0.50 N 36 1 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 114.10 118.60 -4.50 0.60 N 37 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.40 108.30 3.10 0.30 N 38 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 111.03 108.30 2.73 0.30 N 39 1 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.73 121.90 -5.17 0.70 N 40 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.65 108.30 4.35 0.30 N 41 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.45 108.30 2.15 0.30 N 42 2 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.83 121.90 -5.07 0.70 N 43 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.13 108.30 2.83 0.30 N 44 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.62 108.30 2.32 0.30 N 45 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.59 121.90 -5.31 0.70 N 46 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.60 108.30 2.30 0.30 N 47 2 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.71 117.00 -3.29 0.50 N 48 2 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.23 117.70 3.53 0.50 N 49 2 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.72 118.60 -4.88 0.60 N 50 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.09 108.30 2.79 0.30 N 51 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.49 108.30 3.19 0.30 N 52 2 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 53 2 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.22 117.70 3.52 0.50 N 54 2 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.02 118.60 -4.58 0.60 N 55 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.68 108.30 2.38 0.30 N 56 2 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.67 121.90 -5.23 0.70 N 57 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.09 108.30 2.79 0.30 N 58 2 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.12 108.30 3.82 0.30 N 59 2 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.80 121.90 -5.10 0.70 N 60 2 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 113.83 108.30 5.53 0.30 N 61 2 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 111.31 108.30 3.01 0.30 N 62 2 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.51 118.90 3.61 0.60 N 63 2 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.40 121.90 -5.50 0.70 N 64 2 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.98 108.30 2.68 0.30 N 65 2 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.74 108.30 3.44 0.30 N 66 2 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.63 117.00 -3.37 0.50 N 67 2 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.20 117.70 3.50 0.50 N 68 2 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.60 118.60 -5.00 0.60 N 69 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.33 108.30 2.03 0.30 N 70 2 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.68 108.30 3.38 0.30 N 71 2 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.41 121.90 -5.49 0.70 N 72 2 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 110.94 108.30 2.64 0.30 N 73 2 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.22 117.70 3.52 0.50 N 74 2 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 114.29 118.60 -4.31 0.60 N 75 2 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.74 108.30 2.44 0.30 N 76 2 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.12 108.30 4.82 0.30 N 77 2 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.60 121.90 -5.30 0.70 N 78 2 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.49 108.30 4.19 0.30 N 79 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.61 108.30 2.31 0.30 N 80 3 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.74 121.90 -5.16 0.70 N 81 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.24 108.30 2.94 0.30 N 82 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.14 108.30 1.84 0.30 N 83 3 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.72 121.90 -5.18 0.70 N 84 3 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.16 108.30 1.86 0.30 N 85 3 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.57 117.00 -3.43 0.50 N 86 3 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.36 117.70 3.66 0.50 N 87 3 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.71 118.60 -4.89 0.60 N 88 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.87 108.30 2.57 0.30 N 89 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.80 108.30 4.50 0.30 N 90 3 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 91 3 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.22 117.70 3.52 0.50 N 92 3 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.93 118.60 -4.67 0.60 N 93 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.12 108.30 2.82 0.30 N 94 3 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.63 121.90 -5.27 0.70 N 95 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.09 108.30 2.79 0.30 N 96 3 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.86 108.30 3.56 0.30 N 97 3 N1 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 122.52 118.90 3.62 0.60 N 98 3 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.68 121.90 -5.22 0.70 N 99 3 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.03 108.30 2.73 0.30 N 100 3 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.70 108.30 2.40 0.30 N 101 3 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.54 118.90 3.64 0.60 N 102 3 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.53 121.90 -5.37 0.70 N 103 3 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.33 108.30 2.03 0.30 N 104 3 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.67 108.30 2.37 0.30 N 105 3 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.54 117.00 -3.46 0.50 N 106 3 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.01 117.70 3.31 0.50 N 107 3 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.10 118.60 -5.50 0.60 N 108 3 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.92 108.30 4.62 0.30 N 109 3 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 113.80 108.30 5.50 0.30 N 110 3 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.44 121.90 -5.46 0.70 N 111 3 "O4'" B DA 20 ? ? "C1'" B DA 20 ? ? N9 B DA 20 ? ? 111.33 108.30 3.03 0.30 N 112 3 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.26 117.70 3.56 0.50 N 113 3 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 114.75 118.60 -3.85 0.60 N 114 3 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.69 108.30 2.39 0.30 N 115 3 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.17 108.30 4.87 0.30 N 116 3 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.70 121.90 -5.20 0.70 N 117 3 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.29 108.30 3.99 0.30 N 118 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.42 108.30 2.12 0.30 N 119 4 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.83 121.90 -5.07 0.70 N 120 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.29 108.30 2.99 0.30 N 121 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.42 108.30 2.12 0.30 N 122 4 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.70 121.90 -5.20 0.70 N 123 4 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.79 117.00 -3.21 0.50 N 124 4 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.40 117.70 3.70 0.50 N 125 4 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.86 118.60 -4.74 0.60 N 126 4 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.13 108.30 2.83 0.30 N 127 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.52 108.30 4.22 0.30 N 128 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.42 108.30 4.12 0.30 N 129 4 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.71 117.00 -3.29 0.50 N 130 4 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.33 117.70 3.63 0.50 N 131 4 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.95 118.60 -4.65 0.60 N 132 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.83 108.30 2.53 0.30 N 133 4 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.65 121.90 -5.25 0.70 N 134 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.65 108.30 3.35 0.30 N 135 4 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.37 108.30 3.07 0.30 N 136 4 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.82 121.90 -5.08 0.70 N 137 4 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.18 108.30 2.88 0.30 N 138 4 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.48 108.30 2.18 0.30 N 139 4 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.56 118.90 3.66 0.60 N 140 4 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.51 121.90 -5.39 0.70 N 141 4 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.27 108.30 2.97 0.30 N 142 4 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.61 117.00 -3.39 0.50 N 143 4 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.12 117.70 3.42 0.50 N 144 4 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.61 118.60 -4.99 0.60 N 145 4 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.49 108.30 3.19 0.30 N 146 4 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.65 108.30 2.35 0.30 N 147 4 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.76 121.90 -5.14 0.70 N 148 4 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.55 117.00 -3.45 0.50 N 149 4 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.27 117.70 3.57 0.50 N 150 4 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.61 118.60 -4.99 0.60 N 151 4 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.58 108.30 2.28 0.30 N 152 4 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.98 108.30 4.68 0.30 N 153 4 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.66 121.90 -5.24 0.70 N 154 4 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.55 108.30 4.25 0.30 N 155 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.46 108.30 2.16 0.30 N 156 5 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.76 121.90 -5.14 0.70 N 157 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.26 108.30 2.96 0.30 N 158 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.23 108.30 1.93 0.30 N 159 5 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.75 121.90 -5.15 0.70 N 160 5 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.84 117.00 -3.16 0.50 N 161 5 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.28 117.70 3.58 0.50 N 162 5 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.78 118.60 -4.82 0.60 N 163 5 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 110.99 108.30 2.69 0.30 N 164 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 113.06 108.30 4.76 0.30 N 165 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.82 108.30 4.52 0.30 N 166 5 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 167 5 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.22 117.70 3.52 0.50 N 168 5 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.77 118.60 -4.83 0.60 N 169 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.89 108.30 2.59 0.30 N 170 5 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.50 121.90 -5.40 0.70 N 171 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.78 108.30 3.48 0.30 N 172 5 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.45 108.30 3.15 0.30 N 173 5 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.92 121.90 -4.98 0.70 N 174 5 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.28 108.30 2.98 0.30 N 175 5 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.65 108.30 2.35 0.30 N 176 5 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.51 118.90 3.61 0.60 N 177 5 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.61 121.90 -5.29 0.70 N 178 5 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.28 108.30 1.98 0.30 N 179 5 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.79 117.00 -3.21 0.50 N 180 5 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.27 117.70 3.57 0.50 N 181 5 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.98 118.60 -4.62 0.60 N 182 5 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.70 108.30 4.40 0.30 N 183 5 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.20 108.30 2.90 0.30 N 184 5 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.76 121.90 -5.14 0.70 N 185 5 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.68 117.00 -3.32 0.50 N 186 5 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.15 117.70 3.45 0.50 N 187 5 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.66 118.60 -4.94 0.60 N 188 5 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.27 108.30 1.97 0.30 N 189 5 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.05 108.30 4.75 0.30 N 190 5 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.62 121.90 -5.28 0.70 N 191 5 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.54 108.30 4.24 0.30 N 192 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.55 108.30 2.25 0.30 N 193 6 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.73 121.90 -5.17 0.70 N 194 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.14 108.30 2.84 0.30 N 195 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.65 108.30 2.35 0.30 N 196 6 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.65 121.90 -5.25 0.70 N 197 6 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.84 117.00 -3.16 0.50 N 198 6 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.29 117.70 3.59 0.50 N 199 6 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.83 118.60 -4.77 0.60 N 200 6 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.39 108.30 3.09 0.30 N 201 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.83 108.30 4.53 0.30 N 202 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.67 108.30 3.37 0.30 N 203 6 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.79 108.30 2.49 0.30 N 204 6 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.65 117.00 -3.35 0.50 N 205 6 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.32 117.70 3.62 0.50 N 206 6 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.72 118.60 -4.88 0.60 N 207 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.45 108.30 2.15 0.30 N 208 6 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.72 121.90 -5.18 0.70 N 209 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.65 108.30 3.35 0.30 N 210 6 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.58 108.30 3.28 0.30 N 211 6 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.87 121.90 -5.03 0.70 N 212 6 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.16 108.30 2.86 0.30 N 213 6 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.75 108.30 2.45 0.30 N 214 6 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.57 118.90 3.67 0.60 N 215 6 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.42 121.90 -5.48 0.70 N 216 6 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 111.01 108.30 2.71 0.30 N 217 6 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.11 108.30 3.81 0.30 N 218 6 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.54 117.00 -3.46 0.50 N 219 6 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.12 117.70 3.42 0.50 N 220 6 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.27 118.60 -5.33 0.60 N 221 6 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.75 108.30 3.45 0.30 N 222 6 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.38 108.30 2.08 0.30 N 223 6 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.72 121.90 -5.18 0.70 N 224 6 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.62 117.00 -3.38 0.50 N 225 6 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.18 117.70 3.48 0.50 N 226 6 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.61 118.60 -4.99 0.60 N 227 6 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.69 108.30 2.39 0.30 N 228 6 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.09 108.30 4.79 0.30 N 229 6 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.71 121.90 -5.19 0.70 N 230 6 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.60 108.30 4.30 0.30 N 231 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.73 108.30 2.43 0.30 N 232 7 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.79 121.90 -5.11 0.70 N 233 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.80 108.30 2.50 0.30 N 234 7 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.56 108.30 2.26 0.30 N 235 7 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.74 121.90 -5.16 0.70 N 236 7 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.96 108.30 3.66 0.30 N 237 7 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.54 117.00 -3.46 0.50 N 238 7 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.24 117.70 3.54 0.50 N 239 7 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.36 118.60 -5.24 0.60 N 240 7 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.90 108.30 4.60 0.30 N 241 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.44 108.30 2.14 0.30 N 242 7 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 243 7 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.34 117.70 3.64 0.50 N 244 7 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.00 118.60 -4.60 0.60 N 245 7 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.13 108.30 2.83 0.30 N 246 7 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.64 121.90 -5.26 0.70 N 247 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.54 108.30 3.24 0.30 N 248 7 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.34 108.30 3.04 0.30 N 249 7 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.86 121.90 -5.04 0.70 N 250 7 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.59 108.30 3.29 0.30 N 251 7 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.69 108.30 2.39 0.30 N 252 7 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.58 121.90 -5.32 0.70 N 253 7 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.11 108.30 1.81 0.30 N 254 7 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.85 117.00 -3.15 0.50 N 255 7 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.06 117.70 3.36 0.50 N 256 7 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.66 118.60 -4.94 0.60 N 257 7 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 112.22 108.30 3.92 0.30 N 258 7 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.67 108.30 3.37 0.30 N 259 7 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.79 121.90 -5.11 0.70 N 260 7 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.67 117.00 -3.33 0.50 N 261 7 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.48 117.70 3.78 0.50 N 262 7 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.91 118.60 -4.69 0.60 N 263 7 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.42 108.30 2.12 0.30 N 264 7 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 114.32 108.30 6.02 0.30 N 265 7 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.72 108.30 2.42 0.30 N 266 7 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.58 121.90 -5.32 0.70 N 267 7 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.22 108.30 3.92 0.30 N 268 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.57 108.30 2.27 0.30 N 269 8 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.52 118.90 3.62 0.60 N 270 8 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.75 121.90 -5.15 0.70 N 271 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.02 108.30 2.72 0.30 N 272 8 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.78 108.30 2.48 0.30 N 273 8 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.66 121.90 -5.24 0.70 N 274 8 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.83 117.00 -3.17 0.50 N 275 8 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.39 117.70 3.69 0.50 N 276 8 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.84 118.60 -4.76 0.60 N 277 8 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.18 108.30 2.88 0.30 N 278 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.52 108.30 4.22 0.30 N 279 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.49 108.30 4.19 0.30 N 280 8 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 112.44 108.30 4.14 0.30 N 281 8 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.39 117.00 -3.61 0.50 N 282 8 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.35 117.70 3.65 0.50 N 283 8 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.28 118.60 -5.32 0.60 N 284 8 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.78 108.30 4.48 0.30 N 285 8 N1 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 122.51 118.90 3.61 0.60 N 286 8 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.66 121.90 -5.24 0.70 N 287 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.22 108.30 1.92 0.30 N 288 8 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 112.22 108.30 3.92 0.30 N 289 8 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.71 121.90 -5.19 0.70 N 290 8 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.11 108.30 2.81 0.30 N 291 8 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.88 108.30 2.58 0.30 N 292 8 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.53 121.90 -5.37 0.70 N 293 8 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 111.67 108.30 3.37 0.30 N 294 8 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.44 108.30 4.14 0.30 N 295 8 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.44 117.00 -3.56 0.50 N 296 8 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.02 117.70 3.32 0.50 N 297 8 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.13 118.60 -5.47 0.60 N 298 8 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 111.61 108.30 3.31 0.30 N 299 8 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 110.85 108.30 2.55 0.30 N 300 8 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.70 121.90 -5.20 0.70 N 301 8 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.61 117.00 -3.39 0.50 N 302 8 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.15 117.70 3.45 0.50 N 303 8 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.64 118.60 -4.96 0.60 N 304 8 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.54 108.30 2.24 0.30 N 305 8 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 112.80 108.30 4.50 0.30 N 306 8 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.65 121.90 -5.25 0.70 N 307 8 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.35 108.30 4.05 0.30 N 308 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.55 108.30 2.25 0.30 N 309 9 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.80 121.90 -5.10 0.70 N 310 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.63 108.30 2.33 0.30 N 311 9 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.38 108.30 4.08 0.30 N 312 9 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.71 118.90 3.81 0.60 N 313 9 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.33 121.90 -5.57 0.70 N 314 9 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.65 108.30 2.35 0.30 N 315 9 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.33 117.70 3.63 0.50 N 316 9 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 114.04 118.60 -4.56 0.60 N 317 9 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.18 108.30 3.88 0.30 N 318 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 112.06 108.30 3.76 0.30 N 319 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.48 108.30 4.18 0.30 N 320 9 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 321 9 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.25 117.70 3.55 0.50 N 322 9 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.92 118.60 -4.68 0.60 N 323 9 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 110.55 108.30 2.25 0.30 N 324 9 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.59 121.90 -5.31 0.70 N 325 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.42 108.30 3.12 0.30 N 326 9 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.27 108.30 2.97 0.30 N 327 9 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.82 121.90 -5.08 0.70 N 328 9 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.53 108.30 3.23 0.30 N 329 9 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.33 108.30 2.03 0.30 N 330 9 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.55 118.90 3.65 0.60 N 331 9 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.50 121.90 -5.40 0.70 N 332 9 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.42 108.30 2.12 0.30 N 333 9 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.48 108.30 3.18 0.30 N 334 9 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.69 117.00 -3.31 0.50 N 335 9 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.09 117.70 3.39 0.50 N 336 9 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.75 118.60 -4.85 0.60 N 337 9 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.60 108.30 2.30 0.30 N 338 9 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.80 108.30 3.50 0.30 N 339 9 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.71 121.90 -5.19 0.70 N 340 9 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.60 117.00 -3.40 0.50 N 341 9 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.09 117.70 3.39 0.50 N 342 9 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.33 118.60 -5.27 0.60 N 343 9 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 111.94 108.30 3.64 0.30 N 344 9 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.61 108.30 2.31 0.30 N 345 9 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.73 121.90 -5.17 0.70 N 346 9 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.51 108.30 4.21 0.30 N 347 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.49 108.30 2.19 0.30 N 348 10 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.78 121.90 -5.12 0.70 N 349 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.51 108.30 3.21 0.30 N 350 10 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.70 121.90 -5.20 0.70 N 351 10 C4 A DA 4 ? ? C5 A DA 4 ? ? C6 A DA 4 ? ? 113.76 117.00 -3.24 0.50 N 352 10 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 121.30 117.70 3.60 0.50 N 353 10 N1 A DA 4 ? ? C6 A DA 4 ? ? N6 A DA 4 ? ? 113.76 118.60 -4.84 0.60 N 354 10 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.07 108.30 3.77 0.30 N 355 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.46 108.30 3.16 0.30 N 356 10 "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? P A L8P 7 ? ? 127.79 119.70 8.09 1.20 Y 357 10 "O3'" A L8P 7 ? ? P A DT 8 ? ? "O5'" A DT 8 ? ? 116.62 104.00 12.62 1.90 Y 358 10 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.08 108.30 2.78 0.30 N 359 10 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.79 117.00 -3.21 0.50 N 360 10 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.48 117.70 3.78 0.50 N 361 10 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.17 118.60 -4.43 0.60 N 362 10 N3 A DC 10 ? ? C2 A DC 10 ? ? O2 A DC 10 ? ? 116.78 121.90 -5.12 0.70 N 363 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.31 108.30 3.01 0.30 N 364 10 "O4'" A DC 12 ? ? "C1'" A DC 12 ? ? N1 A DC 12 ? ? 111.34 108.30 3.04 0.30 N 365 10 N1 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 122.50 118.90 3.60 0.60 N 366 10 N3 A DC 12 ? ? C2 A DC 12 ? ? O2 A DC 12 ? ? 116.82 121.90 -5.08 0.70 N 367 10 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 111.39 108.30 3.09 0.30 N 368 10 "O4'" B DC 14 ? ? "C1'" B DC 14 ? ? N1 B DC 14 ? ? 110.53 108.30 2.23 0.30 N 369 10 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 122.58 118.90 3.68 0.60 N 370 10 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.49 121.90 -5.41 0.70 N 371 10 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.93 108.30 2.63 0.30 N 372 10 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.15 108.30 3.85 0.30 N 373 10 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 113.72 117.00 -3.28 0.50 N 374 10 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 121.12 117.70 3.42 0.50 N 375 10 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 113.80 118.60 -4.80 0.60 N 376 10 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.13 108.30 1.83 0.30 N 377 10 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 111.60 108.30 3.30 0.30 N 378 10 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.64 121.90 -5.26 0.70 N 379 10 C4 B DA 20 ? ? C5 B DA 20 ? ? C6 B DA 20 ? ? 113.77 117.00 -3.23 0.50 N 380 10 C5 B DA 20 ? ? C6 B DA 20 ? ? N1 B DA 20 ? ? 121.14 117.70 3.44 0.50 N 381 10 N1 B DA 20 ? ? C6 B DA 20 ? ? N6 B DA 20 ? ? 113.80 118.60 -4.80 0.60 N 382 10 "O4'" B DT 21 ? ? "C1'" B DT 21 ? ? N1 B DT 21 ? ? 110.96 108.30 2.66 0.30 N 383 10 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 113.45 108.30 5.15 0.30 N 384 10 N3 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 116.74 121.90 -5.16 0.70 N 385 10 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.81 108.30 4.51 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT B 21 ? ? 0.072 'SIDE CHAIN' 2 2 DG A 6 ? ? 0.060 'SIDE CHAIN' 3 3 DG A 6 ? ? 0.071 'SIDE CHAIN' 4 3 DT B 21 ? ? 0.061 'SIDE CHAIN' 5 6 DA B 20 ? ? 0.053 'SIDE CHAIN' 6 7 DG A 6 ? ? 0.057 'SIDE CHAIN' 7 7 DT A 8 ? ? 0.082 'SIDE CHAIN' 8 7 DT B 16 ? ? 0.077 'SIDE CHAIN' 9 9 DT B 21 ? ? 0.066 'SIDE CHAIN' 10 10 DT A 8 ? ? 0.120 'SIDE CHAIN' 11 10 DT B 16 ? ? 0.087 'SIDE CHAIN' 12 10 DG B 18 ? ? 0.071 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'lowest RMSD to average structure' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L8P _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L8P _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents '2 mM Cidofovir DNA duplex, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_exptl_sample.component 'Cidofovir DNA duplex-1' _pdbx_nmr_exptl_sample.concentration 2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 70 _pdbx_nmr_exptl_sample_conditions.pH 7.0-7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D DQF-COSY' 1 4 1 '2D DQF-COSY' 1 5 1 '2D 1H-13C HSQC' # _pdbx_nmr_refine.entry_id 2L8P _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The upper bounds obtained from MARDIGRAS were multiplied by a factor 1.25 before being exported to Amber 10 for a 25 ps simulated annealing protocol. The simulated annealing protocol using the pairwise generalized Born model was as follows: the temperature of the system was kept constant at 600 K during the first 5 ps, cooled down slowly to 100 K between 5-18 ps, and cooled down to 0 K for the last 7 ps. The protocol was repeated 50 times to obtain an NMR ensemble with the 10 lowest RMSD structures. The structure with the lowest RMSD of the ensemble was put back into MARDIGRAS for a second and third cycle of NOE calibration and structure calculations. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VnmrJ 2.1B 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 4.9 2 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView 8.0.b30 3 'T.L. James' 'noe calibration' MARDIGRAS ? 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' 'structure solution' Amber 10 5 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm' refinement Amber 10 6 'T.L. James' 'structure validation' CORMA ? 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 L8P P P N N 144 L8P N1 N N N 145 L8P C2 C N N 146 L8P O2 O N N 147 L8P N3 N N N 148 L8P C4 C N N 149 L8P N4 N N N 150 L8P C5 C N N 151 L8P C6 C N N 152 L8P "C1'" C N N 153 L8P "C2'" C N S 154 L8P "C3'" C N N 155 L8P "O3'" O N N 156 L8P "C4'" C N N 157 L8P "O4'" O N N 158 L8P OP1 O N N 159 L8P OP2 O N N 160 L8P H5 H N N 161 L8P H6 H N N 162 L8P "H1'" H N N 163 L8P "H3'" H N N 164 L8P "H4'" H N N 165 L8P "H1'A" H N N 166 L8P "H2'" H N N 167 L8P "H3'A" H N N 168 L8P "H4'A" H N N 169 L8P HN4 H N N 170 L8P HN4A H N N 171 L8P O6 O N N 172 L8P H12 H N N 173 L8P H13 H N N 174 L8P H14 H N N 175 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 L8P P "C4'" sing N N 150 L8P P OP1 sing N N 151 L8P P OP2 doub N N 152 L8P N1 C2 sing N N 153 L8P N1 C6 sing N N 154 L8P N1 "C1'" sing N N 155 L8P C2 O2 doub N N 156 L8P C2 N3 sing N N 157 L8P N3 C4 doub N N 158 L8P C4 N4 sing N N 159 L8P C4 C5 sing N N 160 L8P N4 HN4 sing N N 161 L8P N4 HN4A sing N N 162 L8P C5 C6 doub N N 163 L8P C5 H5 sing N N 164 L8P C6 H6 sing N N 165 L8P "C1'" "C2'" sing N N 166 L8P "C1'" "H1'" sing N N 167 L8P "C1'" "H1'A" sing N N 168 L8P "C2'" "C3'" sing N N 169 L8P "C2'" "O4'" sing N N 170 L8P "C2'" "H2'" sing N N 171 L8P "C3'" "O3'" sing N N 172 L8P "C3'" "H3'" sing N N 173 L8P "C3'" "H3'A" sing N N 174 L8P "C4'" "O4'" sing N N 175 L8P "C4'" "H4'" sing N N 176 L8P "C4'" "H4'A" sing N N 177 L8P P O6 sing N N 178 L8P "O3'" H12 sing N N 179 L8P OP1 H13 sing N N 180 L8P O6 H14 sing N N 181 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2L8P 'double helix' 2L8P 'b-form double helix' 2L8P 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.370 -0.075 0.192 -9.763 3.658 -0.401 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.312 -0.050 0.140 6.156 -1.525 1.150 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.276 -0.106 0.204 6.823 -11.130 -2.567 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 4 1_555 B DT 9 1_555 0.055 -0.044 -0.224 -3.723 -16.853 0.556 4 A_DA4:DT21_B A 4 ? B 21 ? 20 1 1 A DT 5 1_555 B DA 8 1_555 -0.118 -0.004 -0.088 -0.735 -14.443 -2.321 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DG 6 1_555 B DC 7 1_555 -0.504 -0.109 -0.094 -10.518 -10.246 0.445 6 A_DG6:DC19_B A 6 ? B 19 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.181 -0.027 0.308 -8.066 -16.486 -1.637 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DA 9 1_555 B DT 4 1_555 0.089 -0.003 0.097 -6.953 -9.971 -1.952 8 A_DA9:DT16_B A 9 ? B 16 ? 20 1 1 A DC 10 1_555 B DG 3 1_555 0.462 -0.125 0.249 -4.464 -3.644 -0.505 9 A_DC10:DG15_B A 10 ? B 15 ? 19 1 1 A DG 11 1_555 B DC 2 1_555 -0.399 -0.118 0.062 -3.806 -10.055 -0.645 10 A_DG11:DC14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.537 -0.107 0.239 -8.516 -3.382 0.169 11 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.290 -0.516 2.886 0.748 5.291 23.034 -2.787 -0.491 2.708 13.025 -1.841 23.638 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 -0.938 -0.324 3.284 -2.557 2.342 34.277 -0.915 1.182 3.315 3.961 4.325 34.446 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 4 1_555 B DT 9 1_555 -0.553 0.054 3.414 1.558 9.824 40.671 -0.999 0.945 3.316 13.885 -2.202 41.819 3 AA_DC3DA4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DA 4 1_555 B DT 9 1_555 A DT 5 1_555 B DA 8 1_555 0.237 -0.627 3.188 -1.702 -1.484 33.569 -0.846 -0.681 3.196 -2.567 2.942 33.642 4 AA_DA4DT5:DA20DT21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DG 6 1_555 B DC 7 1_555 1.074 0.309 3.428 2.591 9.605 39.512 -0.695 -1.237 3.468 13.941 -3.760 40.697 5 AA_DT5DG6:DC19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DG 6 1_555 B DC 7 1_555 A DT 8 1_555 B DA 5 1_555 -0.874 -0.156 6.570 -1.213 4.700 75.535 -0.410 0.640 6.563 3.833 0.989 75.667 6 AA_DG6DT8:DA17DC19_BB A 6 ? B 19 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DA 9 1_555 B DT 4 1_555 0.036 -0.488 3.183 2.002 8.016 35.134 -1.876 0.214 3.001 13.056 -3.261 36.062 7 AA_DT8DA9:DT16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DA 9 1_555 B DT 4 1_555 A DC 10 1_555 B DG 3 1_555 0.060 -0.615 3.280 -0.876 2.129 33.740 -1.399 -0.245 3.234 3.663 1.507 33.816 8 AA_DA9DC10:DG15DT16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DC 10 1_555 B DG 3 1_555 A DG 11 1_555 B DC 2 1_555 0.390 -0.338 3.134 3.217 7.404 35.389 -1.533 -0.197 3.027 11.988 -5.209 36.270 9 AA_DC10DG11:DC14DG15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.235 -0.401 3.434 -2.004 3.278 36.524 -1.106 0.086 3.394 5.213 3.186 36.719 10 AA_DG11DC12:DG13DC14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 500 Varian INOVA 2 'Varian INOVA' # _atom_sites.entry_id 2L8P _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_