HEADER RNA BINDING PROTEIN 01-MAR-11 2LA4 TITLE NMR STRUCTURE OF THE C-TERMINAL RRM DOMAIN OF POLY(U) BINDING 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR AND CYTOPLASMIC POLYADENYLATED RNA-BINDING PROTEIN COMPND 3 PUB1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: C-TERMINAL RRM DOMAIN, RESIDUES 315-414; COMPND 6 SYNONYM: ARS CONSENSUS-BINDING PROTEIN ACBP-60, POLY URIDYLATE- COMPND 7 BINDING PROTEIN, POLY(U)-BINDING PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PUB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET28 KEYWDS RRM, RNA RECOGNITION, STRESS GRANULES, NUCLEUS, RNA-BINDING, KEYWDS 2 TRANSCRIPTION, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.SANTIVERI,Y.MIRASSOU,P.RICO-LASTRES,S.MARTINEZ-LUMBRERAS, AUTHOR 2 J.M.PEREZ-CANADILLAS REVDAT 3 14-JUN-23 2LA4 1 REMARK SEQADV REVDAT 2 27-JUN-12 2LA4 1 JRNL REVDAT 1 28-SEP-11 2LA4 0 JRNL AUTH C.M.SANTIVERI,Y.MIRASSOU,P.RICO-LASTRES, JRNL AUTH 2 S.MARTINEZ-LUMBRERAS,J.M.PEREZ-CANADILLAS JRNL TITL PUB1P C-TERMINAL RRM DOMAIN INTERACTS WITH TIF4631P THROUGH JRNL TITL 2 A CONSERVED REGION NEIGHBOURING THE PAB1P BINDING SITE JRNL REF PLOS ONE V. 6 24481 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21931728 JRNL DOI 10.1371/JOURNAL.PONE.0024481 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TALOS, CYANA REMARK 3 AUTHORS : CORNILESCU, DELAGLIO (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102147. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3MM [U-99% 15N] PUB1 RRM3-1, REMARK 210 25MM POTASSIUM PHOSPHATE-2, 25MM REMARK 210 SODIUM CHLORIDE-3, 0.5MM DTT-4, REMARK 210 0.01MM DSS-5, 90% H2O/10% D2O; REMARK 210 0.3MM PUB1 RRM3-6, 25MM REMARK 210 POTASSIUM PHOSPHATE-7, 25MM REMARK 210 SODIUM CHLORIDE-8, 0.5MM DTT-9, REMARK 210 0.01MM DSS-10, 90% H2O/10% D2O; REMARK 210 0.3MM PUB1 RRM3-11, 25MM REMARK 210 POTASSIUM PHOSPHATE-12, 25MM REMARK 210 SODIUM CHLORIDE-13, 0.5MM DTT-14, REMARK 210 0.1MM DSS-15, 100% D2O; 0.3MM REMARK 210 [U-99% 13C; U-99% 15N] PUB1 RRM3- REMARK 210 16, 25MM POTASSIUM PHOSPHATE-17, REMARK 210 25MM SODIUM CHLORIDE-18, 0.5MM REMARK 210 DTT-19, 0.1MM DSS-20, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N NOESY REMARK 210 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D CBCA(CO)NH; 3D CBCANH; 3D HC - REMARK 210 TOCSY; 2D 1H-1H TOCSY; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR ANALYSIS, REMARK 210 NMRPIPE, CYANA, MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 320 77.50 -116.51 REMARK 500 1 VAL A 324 142.14 67.56 REMARK 500 1 GLN A 327 -71.93 -71.99 REMARK 500 1 ASN A 347 46.59 71.45 REMARK 500 1 ASP A 369 120.74 -170.96 REMARK 500 2 GLN A 316 -54.15 -124.93 REMARK 500 2 THR A 317 116.25 64.99 REMARK 500 2 LEU A 320 67.54 65.28 REMARK 500 2 VAL A 324 158.14 -38.22 REMARK 500 2 GLN A 327 -72.03 -72.86 REMARK 500 2 ARG A 339 76.45 -119.93 REMARK 500 2 VAL A 340 141.84 -179.62 REMARK 500 2 PHE A 351 31.87 -89.88 REMARK 500 2 GLU A 413 113.39 -36.53 REMARK 500 3 SER A 315 -68.16 -124.63 REMARK 500 3 GLN A 316 -42.87 -179.94 REMARK 500 3 ILE A 318 -45.63 -168.16 REMARK 500 3 GLN A 323 94.26 169.83 REMARK 500 3 GLN A 327 -71.63 -70.99 REMARK 500 3 SER A 335 44.75 -105.02 REMARK 500 3 ALA A 336 147.31 167.32 REMARK 500 3 ASN A 347 44.71 76.14 REMARK 500 3 ASP A 369 120.91 -170.15 REMARK 500 3 TRP A 410 144.47 -33.59 REMARK 500 4 LEU A 320 73.02 51.67 REMARK 500 4 GLN A 323 -66.89 -155.27 REMARK 500 4 GLN A 327 -72.39 -73.12 REMARK 500 4 ARG A 339 37.11 -92.25 REMARK 500 4 ASN A 347 55.47 74.99 REMARK 500 4 ASP A 369 120.83 -171.02 REMARK 500 4 GLU A 413 82.54 -55.47 REMARK 500 5 SER A 315 19.52 51.67 REMARK 500 5 GLN A 316 92.22 47.39 REMARK 500 5 ILE A 318 -44.34 -172.80 REMARK 500 5 GLN A 323 -40.00 -166.22 REMARK 500 5 GLN A 327 -71.61 -72.34 REMARK 500 5 ALA A 336 164.49 177.80 REMARK 500 5 ARG A 339 53.68 -97.57 REMARK 500 5 ASN A 347 45.89 76.62 REMARK 500 5 ASP A 369 120.62 -170.92 REMARK 500 5 LYS A 412 81.60 -163.01 REMARK 500 6 THR A 317 -75.71 -90.70 REMARK 500 6 ILE A 318 -50.92 -168.37 REMARK 500 6 LEU A 320 52.42 79.36 REMARK 500 6 GLN A 323 86.74 -175.98 REMARK 500 6 GLN A 327 -72.00 -71.95 REMARK 500 6 SER A 335 41.69 -101.45 REMARK 500 6 ALA A 336 157.05 170.59 REMARK 500 6 ARG A 339 66.00 -100.82 REMARK 500 6 VAL A 340 131.72 -171.39 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17502 RELATED DB: BMRB DBREF 2LA4 A 315 414 UNP P32588 PUB1_YEAST 315 414 SEQADV 2LA4 GLY A 314 UNP P32588 EXPRESSION TAG SEQRES 1 A 101 GLY SER GLN THR ILE GLY LEU PRO PRO GLN VAL ASN PRO SEQRES 2 A 101 GLN ALA VAL ASP HIS ILE ILE ARG SER ALA PRO PRO ARG SEQRES 3 A 101 VAL THR THR ALA TYR ILE GLY ASN ILE PRO HIS PHE ALA SEQRES 4 A 101 THR GLU ALA ASP LEU ILE PRO LEU PHE GLN ASN PHE GLY SEQRES 5 A 101 PHE ILE LEU ASP PHE LYS HIS TYR PRO GLU LYS GLY CYS SEQRES 6 A 101 CYS PHE ILE LYS TYR ASP THR HIS GLU GLN ALA ALA VAL SEQRES 7 A 101 CYS ILE VAL ALA LEU ALA ASN PHE PRO PHE GLN GLY ARG SEQRES 8 A 101 ASN LEU ARG THR GLY TRP GLY LYS GLU ARG HELIX 1 1 ASN A 325 ARG A 334 1 10 HELIX 2 2 THR A 353 ASN A 363 1 11 HELIX 3 3 THR A 385 ALA A 397 1 13 SHEET 1 A 3 THR A 342 GLY A 346 0 SHEET 2 A 3 CYS A 378 LYS A 382 -1 O ILE A 381 N ALA A 343 SHEET 3 A 3 ASP A 369 TYR A 373 -1 N LYS A 371 O PHE A 380 SHEET 1 B 2 PRO A 400 PHE A 401 0 SHEET 2 B 2 ARG A 404 ASN A 405 -1 O ARG A 404 N PHE A 401 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1