data_2LB2 # _entry.id 2LB2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LB2 RCSB RCSB102178 BMRB 17544 WWPDB D_1000102178 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17544 BMRB unspecified . 2LAW PDB unspecified . 2LAX PDB unspecified . 2LAY PDB unspecified . 2LAZ PDB unspecified . 2LB0 PDB unspecified . 2LB1 PDB unspecified . 2LB3 PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LB2 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-03-22 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Macias, M.J.' 1 'Aragon, E.' 2 'Goerner, N.' 3 'Zaromytidou, A.' 4 'Xi, Q.' 5 'Escobedo, A.' 6 'Massague, J.' 7 # _citation.id primary _citation.title 'A Smad action turnover switch operated by WW domain readers of a phosphoserine code.' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 25 _citation.page_first 1275 _citation.page_last 1288 _citation.year 2011 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21685363 _citation.pdbx_database_id_DOI 10.1101/gad.2060811 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Aragon, E.' 1 primary 'Goerner, N.' 2 primary 'Zaromytidou, A.I.' 3 primary 'Xi, Q.' 4 primary 'Escobedo, A.' 5 primary 'Massague, J.' 6 primary 'Macias, M.J.' 7 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase NEDD4-like' 4184.675 1 6.3.2.- ? 'residues 386-420' ? 2 polymer syn 'Mothers against decapentaplegic homolog 3' 1341.272 1 ? ? 'residues 178-189' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'NEDD4.2, Nedd4-2' 2 'MAD homolog 3, Mad3, Mothers against DPP homolog 3, hMAD-3, JV15-2, SMAD family member 3, SMAD 3, Smad3, hSMAD3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQL GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQL A ? 2 'polypeptide(L)' no yes 'E(TPO)PPPGYLSEDG' ETPPPGYLSEDG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 PRO n 1 4 SER n 1 5 GLY n 1 6 TRP n 1 7 GLU n 1 8 GLU n 1 9 ARG n 1 10 LYS n 1 11 ASP n 1 12 ALA n 1 13 LYS n 1 14 GLY n 1 15 ARG n 1 16 THR n 1 17 TYR n 1 18 TYR n 1 19 VAL n 1 20 ASN n 1 21 HIS n 1 22 ASN n 1 23 ASN n 1 24 ARG n 1 25 THR n 1 26 THR n 1 27 THR n 1 28 TRP n 1 29 THR n 1 30 ARG n 1 31 PRO n 1 32 ILE n 1 33 MET n 1 34 GLN n 1 35 LEU n 2 1 GLU n 2 2 TPO n 2 3 PRO n 2 4 PRO n 2 5 PRO n 2 6 GLY n 2 7 TYR n 2 8 LEU n 2 9 SER n 2 10 GLU n 2 11 ASP n 2 12 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NEDD4L, KIAA0439, NEDL3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pETM11 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NED4L_HUMAN Q96PU5 1 GLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIMQL 386 ? 2 UNP SMAD3_HUMAN P84022 2 ETPPPGYLSEDG 178 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LB2 A 1 ? 35 ? Q96PU5 386 ? 420 ? 366 400 2 2 2LB2 B 1 ? 12 ? P84022 178 ? 189 ? 178 189 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H TOCSY' 1 3 3 '3D CBCA(CO)NH' 1 4 3 '3D HNCACB' 1 5 2 '2D 1H-15N HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.420 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 285 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM NEDD4LWW3, 3 mM SMAD3, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM sodium azide, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-100% 15N] NEDD4LWW3, 3 mM SMAD3, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM sodium azide, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' ;1 mM [U-100% 13C; U-100% 15N] NEDD4LWW3, 3 mM SMAD3, 20 mM sodium phosphate, 100 mM sodium chloride, 2 mM sodium azide, 90% H2O/10% D2O ; 3 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2LB2 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LB2 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LB2 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.3 1 'Bartels et al.' 'chemical shift assignment' XEASY ? 2 'Bruker Biospin' collection TOPSPIN ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 4 ? refinement CNS ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Structure of the second domain of human Nedd4L in complex with a doubly phosphorylated human Smad3 (res 178-189) derived peptide.' _exptl.entry_id 2LB2 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LB2 _struct.title 'Structure of the second domain of human Nedd4L in complex with a phosphorylated pTPY motif derived from human Smad3' _struct.pdbx_descriptor 'E3 ubiquitin-protein ligase NEDD4-like (E.C.6.3.2.-), Mothers against decapentaplegic homolog 3' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LB2 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/TRANSCRIPTION' _struct_keywords.text 'Nedd4L, SMAD, CDK, signal transduction, SIGNALING PROTEIN-TRANSCRIPTION complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 31 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 35 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 396 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 400 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B GLU 1 C ? ? ? 1_555 B TPO 2 N ? ? B GLU 178 B TPO 179 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? B TPO 2 C ? ? ? 1_555 B PRO 3 N ? ? B TPO 179 B PRO 180 1_555 ? ? ? ? ? ? ? 1.341 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 6 ? ASP A 11 ? TRP A 371 ASP A 376 A 2 ARG A 15 ? ASN A 20 ? ARG A 380 ASN A 385 A 3 THR A 25 ? THR A 27 ? THR A 390 THR A 392 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 7 ? N GLU A 372 O VAL A 19 ? O VAL A 384 A 2 3 N TYR A 18 ? N TYR A 383 O THR A 27 ? O THR A 392 # _atom_sites.entry_id 2LB2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 366 366 GLY GLY A . n A 1 2 LEU 2 367 367 LEU LEU A . n A 1 3 PRO 3 368 368 PRO PRO A . n A 1 4 SER 4 369 369 SER SER A . n A 1 5 GLY 5 370 370 GLY GLY A . n A 1 6 TRP 6 371 371 TRP TRP A . n A 1 7 GLU 7 372 372 GLU GLU A . n A 1 8 GLU 8 373 373 GLU GLU A . n A 1 9 ARG 9 374 374 ARG ARG A . n A 1 10 LYS 10 375 375 LYS LYS A . n A 1 11 ASP 11 376 376 ASP ASP A . n A 1 12 ALA 12 377 377 ALA ALA A . n A 1 13 LYS 13 378 378 LYS LYS A . n A 1 14 GLY 14 379 379 GLY GLY A . n A 1 15 ARG 15 380 380 ARG ARG A . n A 1 16 THR 16 381 381 THR THR A . n A 1 17 TYR 17 382 382 TYR TYR A . n A 1 18 TYR 18 383 383 TYR TYR A . n A 1 19 VAL 19 384 384 VAL VAL A . n A 1 20 ASN 20 385 385 ASN ASN A . n A 1 21 HIS 21 386 386 HIS HIS A . n A 1 22 ASN 22 387 387 ASN ASN A . n A 1 23 ASN 23 388 388 ASN ASN A . n A 1 24 ARG 24 389 389 ARG ARG A . n A 1 25 THR 25 390 390 THR THR A . n A 1 26 THR 26 391 391 THR THR A . n A 1 27 THR 27 392 392 THR THR A . n A 1 28 TRP 28 393 393 TRP TRP A . n A 1 29 THR 29 394 394 THR THR A . n A 1 30 ARG 30 395 395 ARG ARG A . n A 1 31 PRO 31 396 396 PRO PRO A . n A 1 32 ILE 32 397 397 ILE ILE A . n A 1 33 MET 33 398 398 MET MET A . n A 1 34 GLN 34 399 399 GLN GLN A . n A 1 35 LEU 35 400 400 LEU LEU A . n B 2 1 GLU 1 178 178 GLU GLU B . n B 2 2 TPO 2 179 179 TPO TPO B . n B 2 3 PRO 3 180 180 PRO PRO B . n B 2 4 PRO 4 181 181 PRO PRO B . n B 2 5 PRO 5 182 182 PRO PRO B . n B 2 6 GLY 6 183 183 GLY GLY B . n B 2 7 TYR 7 184 184 TYR TYR B . n B 2 8 LEU 8 185 185 LEU LEU B . n B 2 9 SER 9 186 186 SER SER B . n B 2 10 GLU 10 187 187 GLU GLU B . n B 2 11 ASP 11 188 188 ASP ASP B . n B 2 12 GLY 12 189 189 GLY GLY B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id TPO _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id TPO _pdbx_struct_mod_residue.auth_seq_id 179 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details PHOSPHOTHREONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-06 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id NEDD4LWW3-1 1 ? mM ? 1 SMAD3-2 3 ? mM ? 1 'sodium phosphate-3' 20 ? mM ? 1 'sodium chloride-4' 100 ? mM ? 1 'sodium azide-5' 2 ? mM ? 1 NEDD4LWW3-6 1 ? mM '[U-100% 15N]' 2 SMAD3-7 3 ? mM ? 2 'sodium phosphate-8' 20 ? mM ? 2 'sodium chloride-9' 100 ? mM ? 2 'sodium azide-10' 2 ? mM ? 2 NEDD4LWW3-11 1 ? mM '[U-100% 13C; U-100% 15N]' 3 SMAD3-12 3 ? mM ? 3 'sodium phosphate-13' 20 ? mM ? 3 'sodium chloride-14' 100 ? mM ? 3 'sodium azide-15' 2 ? mM ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LB2 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 10 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 766 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 0 _pdbx_nmr_constraints.NOE_long_range_total_count 298 _pdbx_nmr_constraints.NOE_medium_range_total_count 47 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 249 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 2 1 HZ1 A LYS 378 ? ? O1P B TPO 179 ? ? 1.51 3 1 HH A TYR 382 ? ? OE2 B GLU 187 ? ? 1.60 4 2 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 5 2 HG1 A THR 391 ? ? O B PRO 182 ? ? 1.60 6 2 HH A TYR 382 ? ? OE2 B GLU 187 ? ? 1.60 7 3 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 8 3 HG11 A VAL 384 ? ? H B LEU 185 ? ? 1.31 9 3 HG1 A THR 391 ? ? O B PRO 182 ? ? 1.60 10 4 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 11 5 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.18 12 6 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 13 6 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.52 14 6 HH A TYR 382 ? ? OE1 B GLU 187 ? ? 1.59 15 7 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.18 16 7 HG13 A VAL 384 ? ? HD1 B TYR 184 ? ? 1.34 17 8 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.14 18 8 HG1 A THR 391 ? ? O B PRO 182 ? ? 1.57 19 8 HH A TYR 382 ? ? OE2 B GLU 187 ? ? 1.59 20 9 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.15 21 9 OE2 A GLU 372 ? ? HE2 A HIS 386 ? ? 1.59 22 10 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 23 10 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.50 24 10 HH21 A ARG 380 ? ? O3P B TPO 179 ? ? 1.56 25 11 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 26 11 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.60 27 12 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.18 28 13 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 29 13 HG13 A VAL 384 ? ? HD1 B TYR 184 ? ? 1.34 30 13 HG2 A LYS 375 ? ? HB A THR 381 ? ? 1.34 31 14 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 32 14 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.53 33 14 HG1 A THR 391 ? ? O B PRO 182 ? ? 1.58 34 15 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 35 15 HA A HIS 386 ? ? HE1 B TYR 184 ? ? 1.30 36 15 HH21 A ARG 380 ? ? O2P B TPO 179 ? ? 1.56 37 15 OE2 A GLU 372 ? ? HE2 A HIS 386 ? ? 1.58 38 15 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.58 39 16 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 40 16 HH21 A ARG 380 ? ? O1P B TPO 179 ? ? 1.58 41 16 HH A TYR 382 ? ? OE1 B GLU 187 ? ? 1.60 42 17 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 43 17 HA A HIS 386 ? ? HE1 B TYR 184 ? ? 1.29 44 17 HH A TYR 382 ? ? OE2 B GLU 187 ? ? 1.58 45 17 HG1 A THR 391 ? ? O B PRO 182 ? ? 1.59 46 18 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 47 18 HG12 A VAL 384 ? ? HD1 B TYR 184 ? ? 1.29 48 18 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.55 49 19 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 50 20 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 51 21 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 52 21 HH A TYR 382 ? ? OE1 B GLU 187 ? ? 1.57 53 22 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.18 54 22 HH21 A ARG 380 ? ? O2P B TPO 179 ? ? 1.58 55 23 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 56 23 HZ3 A LYS 378 ? ? O3P B TPO 179 ? ? 1.52 57 23 HH21 A ARG 380 ? ? O1P B TPO 179 ? ? 1.55 58 23 OE2 A GLU 372 ? ? HE2 A HIS 386 ? ? 1.58 59 24 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.16 60 24 HZ2 A LYS 378 ? ? O2P B TPO 179 ? ? 1.54 61 24 HE A ARG 380 ? ? O2P B TPO 179 ? ? 1.59 62 25 HB3 B PRO 180 ? ? HD2 B PRO 181 ? ? 1.17 63 25 HZ3 A LYS 378 ? ? O1P B TPO 179 ? ? 1.54 64 25 HH21 A ARG 380 ? ? O2P B TPO 179 ? ? 1.56 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 24 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 PRO _pdbx_validate_rmsd_angle.auth_seq_id_1 180 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 180 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 180 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 93.35 _pdbx_validate_rmsd_angle.angle_target_value 104.80 _pdbx_validate_rmsd_angle.angle_deviation -11.45 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 389 ? ? 69.26 70.46 2 1 PRO B 180 ? ? -47.65 172.27 3 1 LEU B 185 ? ? 49.17 70.16 4 2 ARG A 389 ? ? 69.92 70.49 5 2 GLN A 399 ? ? -120.00 -52.93 6 2 PRO B 180 ? ? -48.02 170.96 7 3 ARG A 389 ? ? 78.94 70.44 8 3 PRO B 180 ? ? -47.76 171.66 9 3 LEU B 185 ? ? 66.57 70.13 10 4 ARG A 389 ? ? 72.85 70.29 11 4 PRO B 180 ? ? -47.93 173.67 12 4 LEU B 185 ? ? 58.03 70.20 13 5 ARG A 389 ? ? 74.37 70.42 14 5 PRO B 180 ? ? -47.89 170.12 15 5 LEU B 185 ? ? 63.65 68.34 16 6 ARG A 389 ? ? 80.43 70.48 17 6 PRO B 180 ? ? -47.94 171.20 18 7 ARG A 389 ? ? 71.12 70.42 19 7 PRO B 180 ? ? -48.39 169.44 20 8 ARG A 389 ? ? 69.14 70.39 21 8 GLN A 399 ? ? -120.45 -56.37 22 8 PRO B 180 ? ? -47.85 172.83 23 9 ARG A 389 ? ? 69.02 70.31 24 9 PRO B 180 ? ? -47.43 172.21 25 10 ARG A 389 ? ? 71.23 70.28 26 10 PRO B 180 ? ? -47.97 172.46 27 10 LEU B 185 ? ? 63.27 70.09 28 11 ARG A 389 ? ? 70.05 70.28 29 11 PRO B 180 ? ? -48.13 169.77 30 12 ARG A 389 ? ? 72.15 70.16 31 12 PRO B 180 ? ? -48.61 172.14 32 12 LEU B 185 ? ? 66.66 70.09 33 13 ARG A 389 ? ? 72.92 70.29 34 13 PRO B 180 ? ? -48.06 171.51 35 14 ARG A 389 ? ? 69.07 70.48 36 14 PRO B 180 ? ? -47.70 169.42 37 15 ARG A 389 ? ? 71.17 70.37 38 15 PRO B 180 ? ? -48.18 170.95 39 16 ARG A 389 ? ? 69.45 70.20 40 16 PRO B 180 ? ? -48.24 171.00 41 17 ARG A 389 ? ? 78.49 70.28 42 17 PRO B 180 ? ? -48.01 173.51 43 18 ARG A 389 ? ? 69.54 70.44 44 18 PRO B 180 ? ? -48.44 171.89 45 19 ARG A 389 ? ? 65.51 70.36 46 19 GLN A 399 ? ? -63.41 -70.01 47 19 PRO B 180 ? ? -48.39 170.97 48 19 LEU B 185 ? ? 56.44 70.30 49 20 ARG A 389 ? ? 75.24 70.32 50 20 PRO B 180 ? ? -47.50 171.40 51 21 ARG A 389 ? ? 73.26 70.43 52 21 PRO B 180 ? ? -47.93 172.42 53 22 ARG A 389 ? ? 70.90 70.40 54 22 PRO B 180 ? ? -48.08 170.73 55 23 ARG A 389 ? ? 71.46 70.49 56 23 PRO B 180 ? ? -48.01 171.08 57 24 ARG A 389 ? ? 70.87 70.15 58 24 PRO B 180 ? ? -47.90 171.60 59 24 LEU B 185 ? ? 52.22 70.11 60 25 ARG A 389 ? ? 68.01 70.20 61 25 GLN A 399 ? ? -120.21 -58.17 62 25 PRO B 180 ? ? -47.77 171.01 #