data_2LDT # _entry.id 2LDT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LDT pdb_00002ldt 10.2210/pdb2ldt/pdb RCSB RCSB102273 ? ? BMRB 17682 ? ? WWPDB D_1000102273 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 17682 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LDT _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-02 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spano, M.N.' 1 'Walter, N.G.' 2 # _citation.id primary _citation.title 'Solution structure of an alternate conformation of helix27 from Escherichia coli16S rRNA.' _citation.journal_abbrev Biopolymers _citation.journal_volume 95 _citation.page_first 653 _citation.page_last 668 _citation.year 2011 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21442607 _citation.pdbx_database_id_DOI 10.1002/bip.21626 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Spano, M.N.' 1 ? primary 'Walter, N.G.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (31-MER)' _entity.formula_weight 10012.048 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGGAGUACGGCCGCAAGGUUAAAACUCCCC _entity_poly.pdbx_seq_one_letter_code_can GGGGAGUACGGCCGCAAGGUUAAAACUCCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 A n 1 6 G n 1 7 U n 1 8 A n 1 9 C n 1 10 G n 1 11 G n 1 12 C n 1 13 C n 1 14 G n 1 15 C n 1 16 A n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 A n 1 24 A n 1 25 A n 1 26 C n 1 27 U n 1 28 C n 1 29 C n 1 30 C n 1 31 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'transcribed using T7 RNA polymerase from a chemically synthesized double-stranded DNA template.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LDT _struct_ref.pdbx_db_accession 2LDT _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LDT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 31 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LDT _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 31 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D DQF-COSY' 1 3 1 '2D 1H-15N HSQC' 1 4 1 '2D 1H-13C HSQC' 1 5 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 6.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.8 - 1.6 mM [U-99% 13C; U-99% 15N] RNA (31-MER), 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Varian INOVA 1 'Varian INOVA' 600 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LDT _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 13 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LDT _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LDT _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'ensemble of 13 low-energy nmr structures' _exptl.entry_id 2LDT _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LDT _struct.title 'The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LDT _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, rRNA, switch helix' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 1 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 1 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 1 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 2 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 2 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 2 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 4 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 4 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 4 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 5 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 5 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 O6 ? ? ? 1_555 A A 25 N6 ? ? A G 6 A A 25 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 6 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 6 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 6 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 7 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 7 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 9 N4 ? ? ? 1_555 A A 22 N1 ? ? A C 9 A A 22 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 21 O2 ? ? A G 10 A U 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 21 N3 ? ? A G 10 A U 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A U 20 O2 ? ? A G 11 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 11 O6 ? ? ? 1_555 A U 20 N3 ? ? A G 11 A U 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 12 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 13 A G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 13 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 13 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 13 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 17 N7 ? ? A G 14 A A 17 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2LDT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 G 2 2 2 G GUA A . n A 1 3 G 3 3 3 G GUA A . n A 1 4 G 4 4 4 G GUA A . n A 1 5 A 5 5 5 A ADE A . n A 1 6 G 6 6 6 G GUA A . n A 1 7 U 7 7 7 U URI A . n A 1 8 A 8 8 8 A ADE A . n A 1 9 C 9 9 9 C CYT A . n A 1 10 G 10 10 10 G GUA A . n A 1 11 G 11 11 11 G GUA A . n A 1 12 C 12 12 12 C CYT A . n A 1 13 C 13 13 13 C CYT A . n A 1 14 G 14 14 14 G GUA A . n A 1 15 C 15 15 15 C CYT A . n A 1 16 A 16 16 16 A ADE A . n A 1 17 A 17 17 17 A ADE A . n A 1 18 G 18 18 18 G GUA A . n A 1 19 G 19 19 19 G GUA A . n A 1 20 U 20 20 20 U URI A . n A 1 21 U 21 21 21 U URI A . n A 1 22 A 22 22 22 A ADE A . n A 1 23 A 23 23 23 A ADE A . n A 1 24 A 24 24 24 A ADE A . n A 1 25 A 25 25 25 A ADE A . n A 1 26 C 26 26 26 C CYT A . n A 1 27 U 27 27 27 U URI A . n A 1 28 C 28 28 28 C CYT A . n A 1 29 C 29 29 29 C CYT A . n A 1 30 C 30 30 30 C CYT A . n A 1 31 C 31 31 31 C CYT A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-07 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.component 'RNA (31-MER)-1' _pdbx_nmr_exptl_sample.concentration ? _pdbx_nmr_exptl_sample.concentration_range 0.8-1.6 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-99% 13C; U-99% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LDT _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 449 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H21 A G 14 ? ? "HO2'" A A 16 ? ? 1.18 2 1 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.35 3 1 "HO2'" A A 16 ? ? OP2 A A 17 ? ? 1.45 4 1 "HO2'" A G 6 ? ? "O5'" A U 7 ? ? 1.52 5 1 H21 A G 14 ? ? OP2 A A 17 ? ? 1.54 6 1 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.13 7 2 H21 A G 14 ? ? "HO2'" A A 16 ? ? 1.20 8 2 "HO2'" A C 15 ? ? "O5'" A A 16 ? ? 1.42 9 2 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.43 10 2 "HO2'" A A 16 ? ? OP2 A A 17 ? ? 1.46 11 2 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 12 2 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.15 13 3 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.44 14 3 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.47 15 3 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 16 3 "H4'" A C 9 ? ? "O5'" A G 10 ? ? 1.60 17 3 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.09 18 4 "HO2'" A C 9 ? ? "O4'" A G 10 ? ? 1.34 19 4 "HO2'" A G 6 ? ? "O5'" A U 7 ? ? 1.39 20 4 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.48 21 4 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 22 4 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.55 23 4 N2 A G 14 ? ? "O2'" A A 16 ? ? 1.98 24 5 H21 A G 14 ? ? "HO2'" A A 16 ? ? 1.09 25 5 "HO2'" A A 16 ? ? OP2 A A 17 ? ? 1.31 26 5 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.38 27 5 "HO2'" A C 9 ? ? "O4'" A G 10 ? ? 1.44 28 5 "HO2'" A C 15 ? ? "O5'" A A 16 ? ? 1.47 29 5 H21 A G 14 ? ? OP2 A A 17 ? ? 1.54 30 5 "HO2'" A A 23 ? ? "O5'" A A 24 ? ? 1.58 31 5 "O2'" A A 25 ? ? "H5'" A C 26 ? ? 1.59 32 5 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.04 33 6 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.37 34 6 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.46 35 6 "O2'" A A 23 ? ? H8 A A 24 ? ? 1.51 36 6 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 37 6 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.10 38 7 "HO2'" A C 15 ? ? "O5'" A A 16 ? ? 1.31 39 7 "H1'" A A 23 ? ? OP2 A A 24 ? ? 1.50 40 7 H21 A G 14 ? ? OP2 A A 17 ? ? 1.50 41 7 "O2'" A U 21 ? ? "H2'" A A 22 ? ? 1.54 42 7 "HO2'" A U 7 ? ? "O5'" A A 8 ? ? 1.58 43 7 "O2'" A A 16 ? ? OP2 A A 17 ? ? 1.74 44 8 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.40 45 8 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.48 46 8 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 47 8 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.12 48 9 "HO2'" A C 9 ? ? "O4'" A G 10 ? ? 1.39 49 9 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.41 50 9 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.50 51 9 "HO2'" A A 24 ? ? "O5'" A A 25 ? ? 1.52 52 9 H21 A G 14 ? ? OP2 A A 17 ? ? 1.52 53 9 N2 A G 14 ? ? "O2'" A A 16 ? ? 1.97 54 10 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.40 55 10 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.42 56 10 H21 A G 14 ? ? OP2 A A 17 ? ? 1.53 57 10 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.04 58 11 H21 A G 14 ? ? "HO2'" A A 16 ? ? 1.13 59 11 "HO2'" A A 16 ? ? OP2 A A 17 ? ? 1.34 60 11 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.44 61 11 "HO2'" A C 9 ? ? "O4'" A G 10 ? ? 1.50 62 11 "HO2'" A C 13 ? ? "O5'" A G 14 ? ? 1.52 63 11 H21 A G 14 ? ? OP2 A A 17 ? ? 1.54 64 11 "HO2'" A U 7 ? ? "O4'" A A 8 ? ? 1.57 65 11 "HO2'" A C 15 ? ? "O5'" A A 16 ? ? 1.57 66 11 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.01 67 12 "HO2'" A U 21 ? ? "O5'" A A 22 ? ? 1.33 68 12 "O2'" A C 9 ? ? "H5'" A G 10 ? ? 1.33 69 12 "O2'" A U 21 ? ? "H2'" A A 22 ? ? 1.42 70 12 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.49 71 12 H21 A G 14 ? ? OP2 A A 17 ? ? 1.52 72 12 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.52 73 12 N2 A G 14 ? ? "O2'" A A 16 ? ? 2.02 74 13 "HO2'" A A 16 ? ? "O5'" A A 17 ? ? 1.44 75 13 H21 A G 14 ? ? OP2 A A 17 ? ? 1.51 76 13 "O2'" A A 16 ? ? H8 A A 17 ? ? 1.54 77 13 N2 A G 14 ? ? "O2'" A A 16 ? ? 1.99 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C4'" A U 21 ? ? "C3'" A U 21 ? ? 1.404 1.521 -0.117 0.010 N 2 2 "C4'" A G 6 ? ? "C3'" A G 6 ? ? 1.459 1.521 -0.062 0.010 N 3 3 "C4'" A A 22 ? ? "C3'" A A 22 ? ? 1.593 1.527 0.066 0.011 N 4 4 "C4'" A A 16 ? ? "C3'" A A 16 ? ? 1.452 1.521 -0.069 0.010 N 5 4 "C4'" A U 21 ? ? "C3'" A U 21 ? ? 1.428 1.521 -0.093 0.010 N 6 7 "C4'" A U 7 ? ? "C3'" A U 7 ? ? 1.601 1.527 0.074 0.011 N 7 8 "C4'" A U 21 ? ? "C3'" A U 21 ? ? 1.378 1.521 -0.143 0.010 N 8 9 "C4'" A C 9 ? ? "C3'" A C 9 ? ? 1.598 1.527 0.071 0.011 N 9 9 "C4'" A C 13 ? ? "C3'" A C 13 ? ? 1.427 1.521 -0.094 0.010 N 10 9 "C4'" A U 21 ? ? "C3'" A U 21 ? ? 1.458 1.521 -0.063 0.010 N 11 11 "C4'" A G 6 ? ? "C3'" A G 6 ? ? 1.454 1.521 -0.067 0.010 N 12 11 "C4'" A C 13 ? ? "C3'" A C 13 ? ? 1.447 1.521 -0.074 0.010 N 13 12 "C4'" A C 13 ? ? "C3'" A C 13 ? ? 1.460 1.521 -0.061 0.010 N 14 12 "C4'" A U 20 ? ? "C3'" A U 20 ? ? 1.460 1.521 -0.061 0.010 N 15 13 "C4'" A C 13 ? ? "C3'" A C 13 ? ? 1.457 1.521 -0.064 0.010 N 16 13 "C4'" A U 21 ? ? "C3'" A U 21 ? ? 1.450 1.521 -0.071 0.010 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 1 ? ? 0.067 'SIDE CHAIN' 2 1 A A 16 ? ? 0.082 'SIDE CHAIN' 3 2 G A 10 ? ? 0.058 'SIDE CHAIN' 4 2 G A 14 ? ? 0.056 'SIDE CHAIN' 5 2 A A 22 ? ? 0.074 'SIDE CHAIN' 6 2 A A 25 ? ? 0.066 'SIDE CHAIN' 7 3 G A 14 ? ? 0.070 'SIDE CHAIN' 8 3 A A 16 ? ? 0.082 'SIDE CHAIN' 9 4 G A 1 ? ? 0.076 'SIDE CHAIN' 10 4 A A 8 ? ? 0.129 'SIDE CHAIN' 11 4 G A 10 ? ? 0.064 'SIDE CHAIN' 12 4 G A 14 ? ? 0.067 'SIDE CHAIN' 13 4 A A 16 ? ? 0.068 'SIDE CHAIN' 14 5 G A 14 ? ? 0.066 'SIDE CHAIN' 15 6 A A 16 ? ? 0.082 'SIDE CHAIN' 16 7 G A 14 ? ? 0.073 'SIDE CHAIN' 17 8 G A 1 ? ? 0.068 'SIDE CHAIN' 18 8 C A 9 ? ? 0.059 'SIDE CHAIN' 19 8 G A 14 ? ? 0.063 'SIDE CHAIN' 20 8 A A 16 ? ? 0.085 'SIDE CHAIN' 21 8 A A 22 ? ? 0.067 'SIDE CHAIN' 22 8 A A 25 ? ? 0.093 'SIDE CHAIN' 23 9 G A 1 ? ? 0.073 'SIDE CHAIN' 24 9 G A 14 ? ? 0.065 'SIDE CHAIN' 25 9 A A 16 ? ? 0.073 'SIDE CHAIN' 26 10 G A 14 ? ? 0.062 'SIDE CHAIN' 27 10 A A 16 ? ? 0.068 'SIDE CHAIN' 28 10 A A 24 ? ? 0.082 'SIDE CHAIN' 29 10 A A 25 ? ? 0.085 'SIDE CHAIN' 30 11 G A 14 ? ? 0.075 'SIDE CHAIN' 31 11 A A 16 ? ? 0.065 'SIDE CHAIN' 32 12 G A 1 ? ? 0.067 'SIDE CHAIN' 33 12 G A 14 ? ? 0.060 'SIDE CHAIN' 34 12 A A 16 ? ? 0.071 'SIDE CHAIN' 35 12 A A 25 ? ? 0.073 'SIDE CHAIN' 36 13 A A 8 ? ? 0.084 'SIDE CHAIN' 37 13 A A 16 ? ? 0.085 'SIDE CHAIN' 38 13 A A 25 ? ? 0.081 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LDT 'double helix' 2LDT 'a-form double helix' 2LDT tetraloop 2LDT 'mismatched base pair' 2LDT 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 31 1_555 0.277 -0.029 -0.341 -18.021 7.607 -1.333 1 A_G1:C31_A A 1 ? A 31 ? 19 1 1 A G 2 1_555 A C 30 1_555 0.299 -0.031 -0.160 -11.224 -13.694 -2.076 2 A_G2:C30_A A 2 ? A 30 ? 19 1 1 A G 3 1_555 A C 29 1_555 0.654 -0.097 0.303 -7.120 -11.894 -3.185 3 A_G3:C29_A A 3 ? A 29 ? 19 1 1 A G 4 1_555 A C 28 1_555 0.964 -0.370 0.797 -6.856 -22.235 -9.028 4 A_G4:C28_A A 4 ? A 28 ? 19 1 1 A A 5 1_555 A U 27 1_555 0.312 -0.007 -0.074 -7.638 -21.369 -5.250 5 A_A5:U27_A A 5 ? A 27 ? 20 1 1 A G 6 1_555 A C 26 1_555 0.938 -0.332 0.799 -0.231 -22.170 -8.214 6 A_G6:C26_A A 6 ? A 26 ? 19 1 1 A U 7 1_555 A A 25 1_555 0.519 -0.230 0.503 26.753 -9.671 -4.360 7 A_U7:A25_A A 7 ? A 25 ? 20 1 1 A C 9 1_555 A A 22 1_555 0.337 -3.518 1.158 31.352 -21.296 84.347 8 A_C9:A22_A A 9 ? A 22 ? ? 3 1 A G 10 1_555 A U 21 1_555 -1.753 -0.470 0.404 -10.202 -23.434 -6.252 9 A_G10:U21_A A 10 ? A 21 ? 28 1 1 A G 11 1_555 A U 20 1_555 -1.931 -0.397 0.322 4.091 -14.445 -3.362 10 A_G11:U20_A A 11 ? A 20 ? 28 1 1 A C 12 1_555 A G 19 1_555 -0.545 -0.081 -0.407 7.181 -12.423 0.045 11 A_C12:G19_A A 12 ? A 19 ? 19 1 1 A C 13 1_555 A G 18 1_555 -0.082 0.025 -0.935 35.764 7.687 -3.575 12 A_C13:G18_A A 13 ? A 18 ? 19 1 1 A G 14 1_555 A A 17 1_555 6.426 -5.965 1.008 23.393 -27.143 -17.988 13 A_G14:A17_A A 14 ? A 17 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 31 1_555 A G 2 1_555 A C 30 1_555 0.292 -1.859 3.188 3.532 13.758 27.655 -5.734 0.035 2.073 26.668 -6.846 31.026 1 AA_G1G2:C30C31_AA A 1 ? A 31 ? A 2 ? A 30 ? 1 A G 2 1_555 A C 30 1_555 A G 3 1_555 A C 29 1_555 0.202 -1.720 3.030 -2.910 13.625 30.448 -4.835 -0.745 2.066 24.402 5.211 33.416 2 AA_G2G3:C29C30_AA A 2 ? A 30 ? A 3 ? A 29 ? 1 A G 3 1_555 A C 29 1_555 A G 4 1_555 A C 28 1_555 -0.685 -1.479 3.341 -0.763 2.745 34.451 -2.916 1.034 3.231 4.625 1.285 34.565 3 AA_G3G4:C28C29_AA A 3 ? A 29 ? A 4 ? A 28 ? 1 A G 4 1_555 A C 28 1_555 A A 5 1_555 A U 27 1_555 0.287 -1.732 3.182 5.910 9.747 30.523 -4.630 0.421 2.534 17.756 -10.767 32.535 4 AA_G4A5:U27C28_AA A 4 ? A 28 ? A 5 ? A 27 ? 1 A A 5 1_555 A U 27 1_555 A G 6 1_555 A C 26 1_555 -0.258 -1.448 3.058 -3.527 3.711 32.045 -3.189 -0.105 2.888 6.668 6.338 32.441 5 AA_A5G6:C26U27_AA A 5 ? A 27 ? A 6 ? A 26 ? 1 A G 6 1_555 A C 26 1_555 A U 7 1_555 A A 25 1_555 -0.113 -1.454 2.505 3.811 13.302 27.007 -4.571 0.729 1.599 26.398 -7.563 30.287 6 AA_G6U7:A25C26_AA A 6 ? A 26 ? A 7 ? A 25 ? 1 A C 9 1_555 A A 22 1_555 A G 10 1_555 A U 21 1_555 -5.087 -2.405 0.012 126.475 -99.263 -127.030 1.287 -2.447 1.120 50.245 64.019 -171.460 7 AA_C9G10:U21A22_AA A 9 ? A 22 ? A 10 ? A 21 ? 1 A G 10 1_555 A U 21 1_555 A G 11 1_555 A U 20 1_555 0.240 -1.562 2.777 -4.524 10.587 29.860 -4.306 -1.065 2.060 19.652 8.397 31.955 8 AA_G10G11:U20U21_AA A 10 ? A 21 ? A 11 ? A 20 ? 1 A G 11 1_555 A U 20 1_555 A C 12 1_555 A G 19 1_555 -0.018 -1.466 3.138 1.353 13.860 35.662 -3.781 0.177 2.421 21.641 -2.112 38.202 9 AA_G11C12:G19U20_AA A 11 ? A 20 ? A 12 ? A 19 ? 1 A C 12 1_555 A G 19 1_555 A C 13 1_555 A G 18 1_555 -0.772 -1.160 2.550 -0.697 8.851 28.059 -3.671 1.412 2.111 17.702 1.393 29.403 10 AA_C12C13:G18G19_AA A 12 ? A 19 ? A 13 ? A 18 ? 1 A C 13 1_555 A G 18 1_555 A G 14 1_555 A A 17 1_555 -1.185 -0.575 4.218 -8.554 6.463 63.066 -0.909 0.636 4.260 6.132 8.115 63.878 11 AA_C13G14:A17G18_AA A 13 ? A 18 ? A 14 ? A 17 ? #