HEADER METAL TRANSPORT 12-AUG-11 2LHR TITLE SOLUTION STRUCTURE OF STAPHYLOCOCCUS AUREUS ISDH LINKER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 467-543; COMPND 5 SYNONYM: HAPTOGLOBIN RECEPTOR A, STAPHYLOCOCCUS AUREUS SURFACE COMPND 6 PROTEIN I; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: ISDH, HARA, SASI, MW1674; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HEME ACQUISITION, IRON UPTAKE, NEAT DOMAIN, HEMOGLOBIN RECEPTOR, KEYWDS 2 METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SPIRIG,R.T.CLUBB,G.R.MALMIRCHEGINI,S.A.ROBSON REVDAT 3 14-JUN-23 2LHR 1 REMARK SEQADV REVDAT 2 30-JAN-13 2LHR 1 JRNL REVDAT 1 14-NOV-12 2LHR 0 JRNL AUTH T.SPIRIG,G.R.MALMIRCHEGINI,J.ZHANG,S.A.ROBSON,M.SJODT,M.LIU, JRNL AUTH 2 K.KRISHNA KUMAR,C.F.DICKSON,D.A.GELL,B.LEI,J.A.LOO,R.T.CLUBB JRNL TITL STAPHYLOCOCCUS AUREUS USES A NOVEL MULTIDOMAIN RECEPTOR TO JRNL TITL 2 BREAK APART HUMAN HEMOGLOBIN AND STEAL ITS HEME. JRNL REF J.BIOL.CHEM. V. 288 1065 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23132864 JRNL DOI 10.1074/JBC.M112.419119 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PIPP, X-PLOR NIH REMARK 3 AUTHORS : GARRETT (PIPP), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102399. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 15N] ISDH LINKER, REMARK 210 20 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 100 UM AEBSF REMARK 210 PROTEASE INHIBITOR, 0.01 % REMARK 210 SODIUM AZIDE, 7 % D2O, 93% H2O/7% REMARK 210 D2O; 1.3 MM [U-100% 13C; U-100% REMARK 210 15N] ISDH LINKER, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 100 UM AEBSF REMARK 210 PROTEASE INHIBITOR, 0.01 % REMARK 210 SODIUM AZIDE, 7 % D2O, 93% H2O/7% REMARK 210 D2O; 1.3 MM [U-100% 13C; U-100% REMARK 210 15N] ISDH LINKER, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 100 UM AEBSF REMARK 210 PROTEASE INHIBITOR, 0.01 % REMARK 210 SODIUM AZIDE, 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CA)CO; 3D HNCO; REMARK 210 3D CC(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HNHA; 3D HNHB; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N TOCSY; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D CB(CGCD)HD; 2D REMARK 210 CB(CGCD)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, UNIO, REMARK 210 PROCHECKNMR, TALOS, XWINNMR, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 500 H LEU A 504 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 505 145.69 -34.01 REMARK 500 1 THR A 532 -38.74 -167.40 REMARK 500 1 GLU A 533 -100.22 -133.72 REMARK 500 1 PHE A 534 94.59 40.27 REMARK 500 1 GLU A 535 154.13 -43.98 REMARK 500 1 THR A 538 55.39 -145.20 REMARK 500 1 THR A 540 90.65 47.75 REMARK 500 2 PRO A 505 144.79 -33.28 REMARK 500 2 GLU A 533 11.76 49.05 REMARK 500 2 PHE A 534 175.64 48.62 REMARK 500 2 GLU A 535 -154.29 -58.68 REMARK 500 3 PRO A 505 146.70 -34.37 REMARK 500 3 VAL A 531 94.71 -59.13 REMARK 500 3 THR A 532 -32.34 -159.16 REMARK 500 3 GLU A 535 157.25 -43.34 REMARK 500 3 THR A 538 55.32 -171.25 REMARK 500 3 PRO A 539 140.63 -39.11 REMARK 500 4 ASP A 468 -171.43 -69.95 REMARK 500 4 TYR A 469 155.50 58.29 REMARK 500 4 PRO A 505 145.07 -33.99 REMARK 500 4 PHE A 534 97.61 48.59 REMARK 500 4 GLU A 535 160.68 -42.02 REMARK 500 4 ASN A 541 95.60 -164.79 REMARK 500 5 ALA A 482 -64.74 -29.94 REMARK 500 5 THR A 532 -107.73 -167.95 REMARK 500 5 PRO A 539 147.45 -37.52 REMARK 500 6 PRO A 505 143.36 -34.43 REMARK 500 6 THR A 532 -131.35 -100.14 REMARK 500 6 PHE A 534 43.67 -108.97 REMARK 500 6 GLU A 535 105.82 51.69 REMARK 500 7 TYR A 469 159.66 58.32 REMARK 500 7 ALA A 482 -65.24 -29.28 REMARK 500 7 PRO A 505 146.91 -34.15 REMARK 500 7 THR A 532 40.22 -167.63 REMARK 500 7 GLU A 533 85.33 27.83 REMARK 500 7 PRO A 539 138.66 -39.43 REMARK 500 7 THR A 540 -119.23 -70.78 REMARK 500 8 TYR A 469 160.49 58.41 REMARK 500 8 PRO A 505 145.10 -34.92 REMARK 500 8 THR A 532 -69.85 -134.76 REMARK 500 8 PHE A 534 109.08 50.79 REMARK 500 8 GLU A 535 29.13 -67.40 REMARK 500 8 ASN A 536 64.64 -157.95 REMARK 500 8 THR A 538 74.57 -152.99 REMARK 500 9 ASP A 468 -83.90 -77.94 REMARK 500 9 PRO A 505 147.14 -33.97 REMARK 500 9 THR A 532 -5.97 -146.11 REMARK 500 9 PHE A 534 98.21 -52.84 REMARK 500 9 ASN A 536 82.59 55.38 REMARK 500 10 TYR A 469 155.63 -49.61 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 492 0.28 SIDE CHAIN REMARK 500 1 ARG A 520 0.26 SIDE CHAIN REMARK 500 2 ARG A 492 0.27 SIDE CHAIN REMARK 500 2 ARG A 520 0.26 SIDE CHAIN REMARK 500 3 ARG A 492 0.28 SIDE CHAIN REMARK 500 3 ARG A 520 0.27 SIDE CHAIN REMARK 500 4 ARG A 492 0.28 SIDE CHAIN REMARK 500 4 ARG A 520 0.26 SIDE CHAIN REMARK 500 5 ARG A 492 0.28 SIDE CHAIN REMARK 500 5 ARG A 520 0.25 SIDE CHAIN REMARK 500 6 ARG A 492 0.26 SIDE CHAIN REMARK 500 6 ARG A 520 0.27 SIDE CHAIN REMARK 500 7 ARG A 492 0.28 SIDE CHAIN REMARK 500 7 ARG A 520 0.27 SIDE CHAIN REMARK 500 8 ARG A 492 0.28 SIDE CHAIN REMARK 500 8 ARG A 520 0.25 SIDE CHAIN REMARK 500 9 ARG A 492 0.28 SIDE CHAIN REMARK 500 9 ARG A 520 0.27 SIDE CHAIN REMARK 500 10 ARG A 492 0.28 SIDE CHAIN REMARK 500 10 ARG A 520 0.27 SIDE CHAIN REMARK 500 11 ARG A 492 0.28 SIDE CHAIN REMARK 500 11 ARG A 520 0.27 SIDE CHAIN REMARK 500 12 ARG A 492 0.27 SIDE CHAIN REMARK 500 12 ARG A 520 0.26 SIDE CHAIN REMARK 500 13 ARG A 492 0.26 SIDE CHAIN REMARK 500 13 ARG A 520 0.28 SIDE CHAIN REMARK 500 14 ARG A 492 0.27 SIDE CHAIN REMARK 500 14 ARG A 520 0.25 SIDE CHAIN REMARK 500 15 ARG A 492 0.27 SIDE CHAIN REMARK 500 15 ARG A 520 0.27 SIDE CHAIN REMARK 500 16 ARG A 492 0.29 SIDE CHAIN REMARK 500 16 ARG A 520 0.27 SIDE CHAIN REMARK 500 17 ARG A 492 0.28 SIDE CHAIN REMARK 500 17 ARG A 520 0.27 SIDE CHAIN REMARK 500 18 ARG A 492 0.29 SIDE CHAIN REMARK 500 18 ARG A 520 0.27 SIDE CHAIN REMARK 500 19 ARG A 492 0.28 SIDE CHAIN REMARK 500 19 ARG A 520 0.27 SIDE CHAIN REMARK 500 20 ARG A 492 0.27 SIDE CHAIN REMARK 500 20 ARG A 520 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17862 RELATED DB: BMRB DBREF 2LHR A 467 543 UNP Q8NW39 ISDH_STAAW 467 543 SEQADV 2LHR SER A 466 UNP Q8NW39 EXPRESSION TAG SEQRES 1 A 78 SER ASP ASP TYR VAL ASP GLU GLU THR TYR ASN LEU GLN SEQRES 2 A 78 LYS LEU LEU ALA PRO TYR HIS LYS ALA LYS THR LEU GLU SEQRES 3 A 78 ARG GLN VAL TYR GLU LEU GLU LYS LEU GLN GLU LYS LEU SEQRES 4 A 78 PRO GLU LYS TYR LYS ALA GLU TYR LYS LYS LYS LEU ASP SEQRES 5 A 78 GLN THR ARG VAL GLU LEU ALA ASP GLN VAL LYS SER ALA SEQRES 6 A 78 VAL THR GLU PHE GLU ASN VAL THR PRO THR ASN ASP GLN HELIX 1 1 ASP A 471 ALA A 487 1 17 HELIX 2 2 THR A 489 LEU A 504 1 16 HELIX 3 3 PRO A 505 ALA A 530 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1