data_2LNA # _entry.id 2LNA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LNA pdb_00002lna 10.2210/pdb2lna/pdb RCSB RCSB102592 ? ? BMRB 18156 ? ? WWPDB D_1000102592 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18156 BMRB unspecified . HR6741A TargetDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LNA _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-20 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramelot, T.A.' 1 'Yang, Y.' 2 'Lee, H.' 3 'Janua, H.' 4 'Kohan, E.' 5 'Shastry, R.' 6 'Acton, T.B.' 7 'Xiao, R.' 8 'Everett, J.K.' 9 'Prestegard, J.H.' 10 'Montelione, G.T.' 11 'Kennedy, M.A.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 'Mitochondrial Protein Partnership (MPP)' 14 # _citation.id primary _citation.title ;NMR structure and MD simulations of the AAA protease intermembrane space domain indicates peripheral membrane localization within the hexaoligomer. ; _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 587 _citation.page_first 3522 _citation.page_last 3528 _citation.year 2013 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24055473 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2013.09.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramelot, T.A.' 1 ? primary 'Yang, Y.' 2 ? primary 'Sahu, I.D.' 3 ? primary 'Lee, H.W.' 4 ? primary 'Xiao, R.' 5 ? primary 'Lorigan, G.A.' 6 ? primary 'Montelione, G.T.' 7 ? primary 'Kennedy, M.A.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'AFG3-like protein 2' _entity.formula_weight 11493.874 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.4.24.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 164-251' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Paraplegin-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHSHMKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQE LGIEGENRVPVVYIAESDG ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHSHMKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQE LGIEGENRVPVVYIAESDG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier HR6741A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 SER n 1 10 HIS n 1 11 MET n 1 12 LYS n 1 13 ARG n 1 14 SER n 1 15 GLY n 1 16 ARG n 1 17 GLU n 1 18 ILE n 1 19 THR n 1 20 TRP n 1 21 LYS n 1 22 ASP n 1 23 PHE n 1 24 VAL n 1 25 ASN n 1 26 ASN n 1 27 TYR n 1 28 LEU n 1 29 SER n 1 30 LYS n 1 31 GLY n 1 32 VAL n 1 33 VAL n 1 34 ASP n 1 35 ARG n 1 36 LEU n 1 37 GLU n 1 38 VAL n 1 39 VAL n 1 40 ASN n 1 41 LYS n 1 42 ARG n 1 43 PHE n 1 44 VAL n 1 45 ARG n 1 46 VAL n 1 47 THR n 1 48 PHE n 1 49 THR n 1 50 PRO n 1 51 GLY n 1 52 LYS n 1 53 THR n 1 54 PRO n 1 55 VAL n 1 56 ASP n 1 57 GLY n 1 58 GLN n 1 59 TYR n 1 60 VAL n 1 61 TRP n 1 62 PHE n 1 63 ASN n 1 64 ILE n 1 65 GLY n 1 66 SER n 1 67 VAL n 1 68 ASP n 1 69 THR n 1 70 PHE n 1 71 GLU n 1 72 ARG n 1 73 ASN n 1 74 LEU n 1 75 GLU n 1 76 THR n 1 77 LEU n 1 78 GLN n 1 79 GLN n 1 80 GLU n 1 81 LEU n 1 82 GLY n 1 83 ILE n 1 84 GLU n 1 85 GLY n 1 86 GLU n 1 87 ASN n 1 88 ARG n 1 89 VAL n 1 90 PRO n 1 91 VAL n 1 92 VAL n 1 93 TYR n 1 94 ILE n 1 95 ALA n 1 96 GLU n 1 97 SER n 1 98 ASP n 1 99 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene AFG3L2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pMgK' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET15_NESG _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AFG32_HUMAN _struct_ref.pdbx_db_accession Q9Y4W6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLETLQQELGIEGENRVPV VYIAESDG ; _struct_ref.pdbx_align_begin 164 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LNA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 12 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 99 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y4W6 _struct_ref_seq.db_align_beg 164 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 251 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 12 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LNA MET A 1 ? UNP Q9Y4W6 ? ? 'expression tag' 1 1 1 2LNA GLY A 2 ? UNP Q9Y4W6 ? ? 'expression tag' 2 2 1 2LNA HIS A 3 ? UNP Q9Y4W6 ? ? 'expression tag' 3 3 1 2LNA HIS A 4 ? UNP Q9Y4W6 ? ? 'expression tag' 4 4 1 2LNA HIS A 5 ? UNP Q9Y4W6 ? ? 'expression tag' 5 5 1 2LNA HIS A 6 ? UNP Q9Y4W6 ? ? 'expression tag' 6 6 1 2LNA HIS A 7 ? UNP Q9Y4W6 ? ? 'expression tag' 7 7 1 2LNA HIS A 8 ? UNP Q9Y4W6 ? ? 'expression tag' 8 8 1 2LNA SER A 9 ? UNP Q9Y4W6 ? ? 'expression tag' 9 9 1 2LNA HIS A 10 ? UNP Q9Y4W6 ? ? 'expression tag' 10 10 1 2LNA MET A 11 ? UNP Q9Y4W6 ? ? 'expression tag' 11 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCO' 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCACB' 1 6 1 '3D 1H-13C arom NOESY' 1 7 1 '3D 1H-13C NOESYaliph' 1 8 1 '3D 1H-15N NOESY' 1 9 2 '2D 1H-13C HSQC aliphatic' 1 10 2 '2D 1H-15N hetNOE' 1 11 1 '3D HN(CO)CA' 1 12 1 '3D HCCH-TOCSY' 1 13 1 '3D HCCH-COSY' 1 14 1 '3D H(CCO)NH' 1 15 1 '3D C(CO)NH' 1 16 1 '3D HBHA(CO)NH' 1 17 3 '4D CC-HMQC-NOESY-HMQC' 1 18 3 '2D 1H-15N HSQC' 1 19 3 '3D CCH-TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.7 mM [U-100% 13C; U-100% 15N] HR6741A, 200 mM sodium chloride, 20 mM MES, 5 mM calcium chloride, 10 mM DTT, 10 uM DSS, 0.02 % sodium azide, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1.0 mM NC5 HR6741A, 200 mM sodium chloride, 20 mM MES, 5 mM calcium chloride, 10 mM DTT, 10 uM DSS, 0.02 % sodium azide, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.7 mM [U-100% 13C; U-100% 15N] HR6741A, 200 mM sodium chloride, 20 mM MES, 5 mM calcium chloride, 10 mM DTT, 10 uM DSS, 0.02 % sodium azide, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 850 Bruker 'AVANCE III' 1 'Bruker AvanceIII' 600 Varian INOVA 2 'Varian INOVA' 600 Bruker 'AVANCE III' 3 'Bruker AvanceIII' # _pdbx_nmr_refine.entry_id 2LNA _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'CNS refinement in explicit water + two sets of NH RDCs' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LNA _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LNA _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.3 1 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.3 2 'Brunger, Adams, Clore, Gros, Nilges and Read' 'geometry optimization' CNS 1.3 3 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 3.0 4 'Guntert, Mumenthaler and Wuthrich' 'geometry optimization' CYANA 3.0 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 6 'Huang, Tejero, Powers and Montelione' 'data analysis' AutoStructure 2.1 7 'Huang, Tejero, Powers and Montelione' refinement AutoStructure 2.1 8 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe '2008 linux9' 9 'Bruker Biospin' collection TopSpin '2.1.4 and 3.1' 10 Varian collection VnmrJ ? 11 'Bahrami, Markley, Assadi, and Eghbalnia' 'chemical shift assignment' PINE ? 12 Goddard 'data analysis' Sparky 3.113 13 'Shen, Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS+ 1.2009.0721.18 14 'PALES (Zweckstetter, Bax)' 'geometry optimization' PALES 2000 15 'Bhattacharya, Montelione' 'structure solution' PSVS 1.4 16 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.25 17 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LNA _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LNA _struct.title ;Solution NMR Structure of the mitochondrial inner membrane domain (residues 164-251), FtsH_ext, from the paraplegin-like protein AFG3L2 from Homo sapiens, Northeast Structural Genomics Consortium Target HR6741A ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LNA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, MPP, HYDROLASE, Mitochondrial Protein Partnership ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 19 ? TYR A 27 ? THR A 19 TYR A 27 1 ? 9 HELX_P HELX_P2 2 LEU A 28 ? GLY A 31 ? LEU A 28 GLY A 31 5 ? 4 HELX_P HELX_P3 3 SER A 66 ? LEU A 81 ? SER A 66 LEU A 81 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 16 ? GLU A 17 ? ARG A 16 GLU A 17 A 2 VAL A 60 ? ASN A 63 ? VAL A 60 ASN A 63 A 3 PHE A 43 ? PHE A 48 ? PHE A 43 PHE A 48 A 4 VAL A 33 ? VAL A 39 ? VAL A 33 VAL A 39 A 5 VAL A 91 ? TYR A 93 ? VAL A 91 TYR A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 16 ? N ARG A 16 O TRP A 61 ? O TRP A 61 A 2 3 O PHE A 62 ? O PHE A 62 N VAL A 44 ? N VAL A 44 A 3 4 O ARG A 45 ? O ARG A 45 N GLU A 37 ? N GLU A 37 A 4 5 N VAL A 38 ? N VAL A 38 O VAL A 92 ? O VAL A 92 # _atom_sites.entry_id 2LNA _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 HIS 7 7 7 HIS HIS A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 TRP 20 20 20 TRP TRP A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 TRP 61 61 61 TRP TRP A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 GLY 99 99 99 GLY GLY A . n # loop_ _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center _pdbx_SG_project.project_name 'Northeast Structural Genomics Consortium' 1 NESG PSI:Biology 'Mitochondrial Protein Partnership' 2 MPP PSI:Biology # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-25 2 'Structure model' 1 1 2012-03-21 3 'Structure model' 1 2 2013-10-30 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id HR6741A-1 0.7 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium chloride-2' 200 ? mM ? 1 MES-3 20 ? mM ? 1 'calcium chloride-4' 5 ? mM ? 1 DTT-5 10 ? mM ? 1 DSS-6 10 ? uM ? 1 'sodium azide-7' 0.02 ? % ? 1 HR6741A-8 1.0 ? mM NC5 2 'sodium chloride-9' 200 ? mM ? 2 MES-10 20 ? mM ? 2 'calcium chloride-11' 5 ? mM ? 2 DTT-12 10 ? mM ? 2 DSS-13 10 ? uM ? 2 'sodium azide-14' 0.02 ? % ? 2 HR6741A-15 0.7 ? mM '[U-100% 13C; U-100% 15N]' 3 'sodium chloride-16' 200 ? mM ? 3 MES-17 20 ? mM ? 3 'calcium chloride-18' 5 ? mM ? 3 DTT-19 10 ? mM ? 3 DSS-20 10 ? uM ? 3 'sodium azide-21' 0.02 ? % ? 3 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 6 ? ? -66.34 96.22 2 1 MET A 11 ? ? -62.03 98.80 3 1 LYS A 12 ? ? -60.43 73.39 4 1 ARG A 13 ? ? 58.49 -74.70 5 1 SER A 14 ? ? -163.52 -51.04 6 1 TYR A 27 ? ? -127.81 -64.72 7 1 LYS A 41 ? ? 55.85 5.43 8 1 PRO A 50 ? ? -50.30 97.16 9 1 GLN A 58 ? ? 66.99 94.15 10 1 ALA A 95 ? ? -161.04 90.86 11 2 HIS A 4 ? ? -75.34 -168.42 12 2 HIS A 5 ? ? -66.71 89.15 13 2 HIS A 8 ? ? -54.46 102.57 14 2 HIS A 10 ? ? -153.05 74.43 15 2 MET A 11 ? ? 56.67 -89.95 16 2 ARG A 13 ? ? -170.58 -64.03 17 2 SER A 14 ? ? 64.31 -70.14 18 2 TYR A 27 ? ? -122.13 -64.84 19 2 LYS A 41 ? ? 53.70 17.15 20 3 MET A 11 ? ? 70.18 -19.95 21 3 LYS A 12 ? ? 52.03 74.12 22 3 ARG A 13 ? ? -85.53 31.33 23 3 SER A 14 ? ? -55.11 93.66 24 3 ASN A 40 ? ? 58.66 18.61 25 3 ASP A 98 ? ? 66.87 -71.10 26 4 HIS A 3 ? ? 50.99 -93.12 27 4 HIS A 4 ? ? -171.73 103.77 28 4 HIS A 6 ? ? 69.03 142.81 29 4 ASN A 40 ? ? 54.12 18.45 30 4 LYS A 41 ? ? 57.09 16.04 31 4 GLN A 58 ? ? 56.44 85.33 32 5 HIS A 3 ? ? -62.21 87.51 33 5 HIS A 6 ? ? 65.29 -178.20 34 5 HIS A 7 ? ? 71.28 -0.71 35 5 SER A 14 ? ? 79.98 -22.08 36 5 TYR A 27 ? ? -122.75 -69.35 37 5 LYS A 41 ? ? 63.31 -4.44 38 5 PRO A 50 ? ? -54.99 104.50 39 5 GLU A 96 ? ? 64.31 -78.89 40 6 HIS A 3 ? ? -146.91 15.45 41 6 HIS A 6 ? ? -68.63 91.88 42 6 SER A 9 ? ? 41.08 -86.93 43 6 LYS A 12 ? ? 72.73 -70.29 44 6 TYR A 27 ? ? -126.12 -69.95 45 6 LYS A 41 ? ? 65.64 -3.02 46 6 PRO A 54 ? ? -49.98 153.14 47 6 GLU A 96 ? ? -67.85 99.22 48 6 SER A 97 ? ? -146.18 46.15 49 7 HIS A 8 ? ? -164.86 -30.24 50 7 HIS A 10 ? ? -142.99 46.59 51 7 MET A 11 ? ? -63.58 88.19 52 7 VAL A 24 ? ? -61.98 -71.38 53 7 TYR A 27 ? ? -124.62 -66.42 54 7 ASN A 40 ? ? 59.95 19.51 55 7 LYS A 41 ? ? 42.06 18.29 56 7 GLN A 58 ? ? 54.44 -100.31 57 7 ALA A 95 ? ? 71.64 -7.58 58 8 HIS A 7 ? ? -68.39 85.61 59 8 MET A 11 ? ? -78.41 36.78 60 8 SER A 14 ? ? -114.88 -165.93 61 8 ASN A 40 ? ? 58.94 16.75 62 8 PRO A 50 ? ? -63.91 73.85 63 8 PRO A 54 ? ? -58.25 99.30 64 9 HIS A 4 ? ? 73.33 -51.47 65 9 HIS A 7 ? ? 60.13 -149.68 66 9 SER A 9 ? ? -66.58 91.98 67 9 TYR A 27 ? ? -120.34 -66.19 68 9 LYS A 41 ? ? 61.71 -0.70 69 9 PRO A 50 ? ? -57.07 103.66 70 9 SER A 97 ? ? -144.89 21.45 71 10 HIS A 3 ? ? 74.91 -19.03 72 10 SER A 9 ? ? -140.02 -3.05 73 10 MET A 11 ? ? 66.53 -167.28 74 10 SER A 14 ? ? -120.20 -79.38 75 10 TYR A 27 ? ? -128.22 -61.57 76 10 ASN A 40 ? ? 49.73 27.92 77 10 LYS A 41 ? ? 53.74 15.52 78 10 SER A 97 ? ? 66.12 98.56 79 11 MET A 11 ? ? -43.09 105.61 80 11 ARG A 13 ? ? 59.08 -87.96 81 11 SER A 14 ? ? 175.82 -70.56 82 11 ALA A 95 ? ? -154.71 65.91 83 12 HIS A 5 ? ? 57.62 -93.30 84 12 HIS A 6 ? ? 44.73 23.59 85 12 HIS A 7 ? ? -163.19 104.19 86 12 LYS A 12 ? ? -64.66 83.36 87 12 ARG A 13 ? ? 58.01 86.94 88 12 PRO A 50 ? ? -73.64 35.93 89 12 PRO A 54 ? ? -62.09 -81.83 90 12 GLN A 58 ? ? -65.06 92.63 91 12 ILE A 83 ? ? -67.77 92.80 92 12 ASP A 98 ? ? -153.05 -49.65 93 13 HIS A 3 ? ? -105.46 72.79 94 13 HIS A 4 ? ? -164.76 34.40 95 13 HIS A 8 ? ? 40.88 -83.36 96 13 HIS A 10 ? ? -161.32 93.89 97 13 ARG A 13 ? ? -68.94 81.85 98 13 TYR A 27 ? ? -108.91 -65.54 99 13 PRO A 54 ? ? -63.39 89.04 100 13 ASP A 98 ? ? 65.72 -75.61 101 14 HIS A 5 ? ? -63.77 81.93 102 14 HIS A 6 ? ? 169.37 128.80 103 14 MET A 11 ? ? -151.61 -59.54 104 14 ARG A 13 ? ? 148.05 38.87 105 14 TYR A 27 ? ? -122.19 -67.47 106 14 ASN A 40 ? ? 59.47 18.37 107 14 PRO A 54 ? ? -73.76 -151.26 108 14 ASP A 56 ? ? -143.30 -48.78 109 14 GLN A 58 ? ? -163.32 84.26 110 15 HIS A 5 ? ? -81.45 -79.12 111 15 HIS A 6 ? ? -163.15 -23.38 112 15 HIS A 10 ? ? -131.68 -156.09 113 15 ARG A 13 ? ? 58.95 91.62 114 15 TYR A 27 ? ? -124.80 -67.12 115 15 LYS A 41 ? ? 58.47 6.14 116 15 PRO A 50 ? ? -56.31 95.52 117 16 HIS A 4 ? ? -60.74 94.60 118 16 LYS A 12 ? ? -51.12 91.85 119 16 ARG A 13 ? ? -151.10 71.74 120 16 TYR A 27 ? ? -128.12 -64.93 121 16 ASN A 40 ? ? 58.74 18.38 122 16 LYS A 41 ? ? 58.66 2.23 123 16 GLU A 96 ? ? 54.75 -88.71 124 16 SER A 97 ? ? -174.92 11.01 125 17 HIS A 6 ? ? 71.62 113.18 126 17 SER A 9 ? ? 61.79 -86.23 127 17 HIS A 10 ? ? -170.26 -156.97 128 17 MET A 11 ? ? 76.69 137.35 129 17 TYR A 27 ? ? -127.55 -67.99 130 17 ASN A 40 ? ? 37.85 37.17 131 17 LYS A 41 ? ? 67.27 -1.83 132 17 PRO A 50 ? ? -55.67 106.94 133 17 PRO A 54 ? ? -78.28 -162.74 134 17 GLN A 58 ? ? 61.90 -0.16 135 17 GLU A 96 ? ? -80.50 -70.83 136 18 HIS A 5 ? ? -61.71 85.35 137 18 HIS A 6 ? ? -150.35 71.47 138 18 HIS A 10 ? ? -166.46 -65.22 139 18 MET A 11 ? ? 43.36 130.02 140 18 LYS A 12 ? ? -117.56 77.62 141 18 SER A 14 ? ? -165.75 65.02 142 18 TYR A 27 ? ? -120.66 -68.97 143 18 LYS A 41 ? ? 58.58 8.28 144 18 PRO A 50 ? ? -58.87 97.94 145 19 HIS A 4 ? ? 47.60 -65.21 146 19 MET A 11 ? ? 76.23 -49.03 147 19 SER A 14 ? ? 65.46 -81.50 148 19 TYR A 27 ? ? -128.60 -68.04 149 19 ASN A 40 ? ? 57.99 17.10 150 19 SER A 97 ? ? -152.37 80.16 151 20 HIS A 3 ? ? 54.85 -86.78 152 20 HIS A 10 ? ? 59.60 89.89 153 20 TYR A 27 ? ? -126.90 -64.69 154 20 LYS A 41 ? ? 66.80 -6.87 155 20 ALA A 95 ? ? -119.11 67.40 #