data_2LNT # _entry.id 2LNT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LNT pdb_00002lnt 10.2210/pdb2lnt/pdb RCSB RCSB102611 ? ? BMRB 18179 ? ? WWPDB D_1000102611 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18179 BMRB unspecified . 2LNS PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LNT _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-01-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Patel, P.' 1 'Clarke, C.J.' 2 'Barraclough, D.L.' 3 'Rudland, P.S.' 4 'Barraclough, R.' 5 'Lian, L.' 6 # _citation.id primary _citation.title 'Metastasis-promoting anterior gradient 2 protein has a dimeric thioredoxin fold structure and a role in cell adhesion.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 425 _citation.page_first 929 _citation.page_last 943 _citation.year 2013 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23274113 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2012.12.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patel, P.' 1 ? primary 'Clarke, C.' 2 ? primary 'Barraclough, D.L.' 3 ? primary 'Jowitt, T.A.' 4 ? primary 'Rudland, P.S.' 5 ? primary 'Barraclough, R.' 6 ? primary 'Lian, L.Y.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Anterior gradient protein 2 homolog' _entity.formula_weight 16130.548 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation E60A _entity.pdbx_fragment 'UNP residues 41-175' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AG-2, hAG-2, HPC8, Secreted cement gland protein XAG-2 homolog' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IDPFTPQTLSRGWGDQLIWTQTYEAALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTD KHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL ; _entity_poly.pdbx_seq_one_letter_code_can ;IDPFTPQTLSRGWGDQLIWTQTYEAALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTD KHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASP n 1 3 PRO n 1 4 PHE n 1 5 THR n 1 6 PRO n 1 7 GLN n 1 8 THR n 1 9 LEU n 1 10 SER n 1 11 ARG n 1 12 GLY n 1 13 TRP n 1 14 GLY n 1 15 ASP n 1 16 GLN n 1 17 LEU n 1 18 ILE n 1 19 TRP n 1 20 THR n 1 21 GLN n 1 22 THR n 1 23 TYR n 1 24 GLU n 1 25 ALA n 1 26 ALA n 1 27 LEU n 1 28 TYR n 1 29 LYS n 1 30 SER n 1 31 LYS n 1 32 THR n 1 33 SER n 1 34 ASN n 1 35 LYS n 1 36 PRO n 1 37 LEU n 1 38 MET n 1 39 ILE n 1 40 ILE n 1 41 HIS n 1 42 HIS n 1 43 LEU n 1 44 ASP n 1 45 GLU n 1 46 CYS n 1 47 PRO n 1 48 HIS n 1 49 SER n 1 50 GLN n 1 51 ALA n 1 52 LEU n 1 53 LYS n 1 54 LYS n 1 55 VAL n 1 56 PHE n 1 57 ALA n 1 58 GLU n 1 59 ASN n 1 60 LYS n 1 61 GLU n 1 62 ILE n 1 63 GLN n 1 64 LYS n 1 65 LEU n 1 66 ALA n 1 67 GLU n 1 68 GLN n 1 69 PHE n 1 70 VAL n 1 71 LEU n 1 72 LEU n 1 73 ASN n 1 74 LEU n 1 75 VAL n 1 76 TYR n 1 77 GLU n 1 78 THR n 1 79 THR n 1 80 ASP n 1 81 LYS n 1 82 HIS n 1 83 LEU n 1 84 SER n 1 85 PRO n 1 86 ASP n 1 87 GLY n 1 88 GLN n 1 89 TYR n 1 90 VAL n 1 91 PRO n 1 92 ARG n 1 93 ILE n 1 94 MET n 1 95 PHE n 1 96 VAL n 1 97 ASP n 1 98 PRO n 1 99 SER n 1 100 LEU n 1 101 THR n 1 102 VAL n 1 103 ARG n 1 104 ALA n 1 105 ASP n 1 106 ILE n 1 107 THR n 1 108 GLY n 1 109 ARG n 1 110 TYR n 1 111 SER n 1 112 ASN n 1 113 ARG n 1 114 LEU n 1 115 TYR n 1 116 ALA n 1 117 TYR n 1 118 GLU n 1 119 PRO n 1 120 ALA n 1 121 ASP n 1 122 THR n 1 123 ALA n 1 124 LEU n 1 125 LEU n 1 126 LEU n 1 127 ASP n 1 128 ASN n 1 129 MET n 1 130 LYS n 1 131 LYS n 1 132 ALA n 1 133 LEU n 1 134 LYS n 1 135 LEU n 1 136 LEU n 1 137 LYS n 1 138 THR n 1 139 GLU n 1 140 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGR2, AG2, UNQ515/PRO1030' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET-151D _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AGR2_HUMAN _struct_ref.pdbx_db_accession O95994 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQTLSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQFVLLNLVYETTDKHLSP DGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLLDNMKKALKLLKTEL ; _struct_ref.pdbx_align_begin 41 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LNT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O95994 _struct_ref_seq.db_align_beg 41 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 175 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 41 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LNT ILE A 1 ? UNP O95994 ? ? 'expression tag' 36 1 1 2LNT ASP A 2 ? UNP O95994 ? ? 'expression tag' 37 2 1 2LNT PRO A 3 ? UNP O95994 ? ? 'expression tag' 38 3 1 2LNT PHE A 4 ? UNP O95994 ? ? 'expression tag' 39 4 1 2LNT THR A 5 ? UNP O95994 ? ? 'expression tag' 40 5 1 2LNT ALA A 25 ? UNP O95994 GLU 60 'engineered mutation' 60 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCA' 1 4 1 '3D HN(CO)CA' 1 5 1 '3D HNCACB' 1 6 1 '3D CBCA(CO)NH' 1 7 1 '3D HNCO' 1 8 1 '3D 1H-13C NOESY' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '3D HN(CA)CO' 1 11 2 IPAP 1 12 1 '3D HBHA(CO)NH' 1 13 1 '3D HBHANH' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.3 mM [U-13C; U-15N] AGR2 E60A, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.3 mM [U-15N] AGR2 E60A, 10 mg Pf1 phage, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LNT _pdbx_nmr_refine.method 'simulated annealing, refinement' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LNT _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LNT _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNSSOLVE ? 1 CCPN 'peak picking' Analysis ? 2 CCPN 'chemical shift assignment' Analysis ? 3 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 4 'Bruker Biospin' collection TopSpin ? 5 'Bruker Biospin' processing TopSpin ? 6 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNSSOLVE ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LNT _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LNT _struct.title 'Solution structure of E60A mutant AGR2' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LNT _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Thioredoxin-fold, cancer, adhesion, metastasis, CELL ADHESION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 22 ? SER A 33 ? THR A 57 SER A 68 1 ? 12 HELX_P HELX_P2 2 HIS A 48 ? ALA A 57 ? HIS A 83 ALA A 92 1 ? 10 HELX_P HELX_P3 3 ASN A 59 ? GLN A 68 ? ASN A 94 GLN A 103 1 ? 10 HELX_P HELX_P4 4 GLU A 118 ? ALA A 120 ? GLU A 153 ALA A 155 5 ? 3 HELX_P HELX_P5 5 ASP A 121 ? LYS A 134 ? ASP A 156 LYS A 169 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 70 ? LEU A 71 ? VAL A 105 LEU A 106 A 2 LEU A 37 ? MET A 38 ? LEU A 72 MET A 73 A 3 PHE A 95 ? VAL A 96 ? PHE A 130 VAL A 131 B 1 HIS A 41 ? HIS A 42 ? HIS A 76 HIS A 77 B 2 LEU A 74 ? VAL A 75 ? LEU A 109 VAL A 110 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 70 ? O VAL A 105 N MET A 38 ? N MET A 73 A 2 3 N LEU A 37 ? N LEU A 72 O VAL A 96 ? O VAL A 131 B 1 2 N HIS A 42 ? N HIS A 77 O LEU A 74 ? O LEU A 109 # _atom_sites.entry_id 2LNT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 36 36 ILE ILE A . n A 1 2 ASP 2 37 37 ASP ASP A . n A 1 3 PRO 3 38 38 PRO PRO A . n A 1 4 PHE 4 39 39 PHE PHE A . n A 1 5 THR 5 40 40 THR THR A . n A 1 6 PRO 6 41 41 PRO PRO A . n A 1 7 GLN 7 42 42 GLN GLN A . n A 1 8 THR 8 43 43 THR THR A . n A 1 9 LEU 9 44 44 LEU LEU A . n A 1 10 SER 10 45 45 SER SER A . n A 1 11 ARG 11 46 46 ARG ARG A . n A 1 12 GLY 12 47 47 GLY GLY A . n A 1 13 TRP 13 48 48 TRP TRP A . n A 1 14 GLY 14 49 49 GLY GLY A . n A 1 15 ASP 15 50 50 ASP ASP A . n A 1 16 GLN 16 51 51 GLN GLN A . n A 1 17 LEU 17 52 52 LEU LEU A . n A 1 18 ILE 18 53 53 ILE ILE A . n A 1 19 TRP 19 54 54 TRP TRP A . n A 1 20 THR 20 55 55 THR THR A . n A 1 21 GLN 21 56 56 GLN GLN A . n A 1 22 THR 22 57 57 THR THR A . n A 1 23 TYR 23 58 58 TYR TYR A . n A 1 24 GLU 24 59 59 GLU GLU A . n A 1 25 ALA 25 60 60 ALA ALA A . n A 1 26 ALA 26 61 61 ALA ALA A . n A 1 27 LEU 27 62 62 LEU LEU A . n A 1 28 TYR 28 63 63 TYR TYR A . n A 1 29 LYS 29 64 64 LYS LYS A . n A 1 30 SER 30 65 65 SER SER A . n A 1 31 LYS 31 66 66 LYS LYS A . n A 1 32 THR 32 67 67 THR THR A . n A 1 33 SER 33 68 68 SER SER A . n A 1 34 ASN 34 69 69 ASN ASN A . n A 1 35 LYS 35 70 70 LYS LYS A . n A 1 36 PRO 36 71 71 PRO PRO A . n A 1 37 LEU 37 72 72 LEU LEU A . n A 1 38 MET 38 73 73 MET MET A . n A 1 39 ILE 39 74 74 ILE ILE A . n A 1 40 ILE 40 75 75 ILE ILE A . n A 1 41 HIS 41 76 76 HIS HIS A . n A 1 42 HIS 42 77 77 HIS HIS A . n A 1 43 LEU 43 78 78 LEU LEU A . n A 1 44 ASP 44 79 79 ASP ASP A . n A 1 45 GLU 45 80 80 GLU GLU A . n A 1 46 CYS 46 81 81 CYS CYS A . n A 1 47 PRO 47 82 82 PRO PRO A . n A 1 48 HIS 48 83 83 HIS HIS A . n A 1 49 SER 49 84 84 SER SER A . n A 1 50 GLN 50 85 85 GLN GLN A . n A 1 51 ALA 51 86 86 ALA ALA A . n A 1 52 LEU 52 87 87 LEU LEU A . n A 1 53 LYS 53 88 88 LYS LYS A . n A 1 54 LYS 54 89 89 LYS LYS A . n A 1 55 VAL 55 90 90 VAL VAL A . n A 1 56 PHE 56 91 91 PHE PHE A . n A 1 57 ALA 57 92 92 ALA ALA A . n A 1 58 GLU 58 93 93 GLU GLU A . n A 1 59 ASN 59 94 94 ASN ASN A . n A 1 60 LYS 60 95 95 LYS LYS A . n A 1 61 GLU 61 96 96 GLU GLU A . n A 1 62 ILE 62 97 97 ILE ILE A . n A 1 63 GLN 63 98 98 GLN GLN A . n A 1 64 LYS 64 99 99 LYS LYS A . n A 1 65 LEU 65 100 100 LEU LEU A . n A 1 66 ALA 66 101 101 ALA ALA A . n A 1 67 GLU 67 102 102 GLU GLU A . n A 1 68 GLN 68 103 103 GLN GLN A . n A 1 69 PHE 69 104 104 PHE PHE A . n A 1 70 VAL 70 105 105 VAL VAL A . n A 1 71 LEU 71 106 106 LEU LEU A . n A 1 72 LEU 72 107 107 LEU LEU A . n A 1 73 ASN 73 108 108 ASN ASN A . n A 1 74 LEU 74 109 109 LEU LEU A . n A 1 75 VAL 75 110 110 VAL VAL A . n A 1 76 TYR 76 111 111 TYR TYR A . n A 1 77 GLU 77 112 112 GLU GLU A . n A 1 78 THR 78 113 113 THR THR A . n A 1 79 THR 79 114 114 THR THR A . n A 1 80 ASP 80 115 115 ASP ASP A . n A 1 81 LYS 81 116 116 LYS LYS A . n A 1 82 HIS 82 117 117 HIS HIS A . n A 1 83 LEU 83 118 118 LEU LEU A . n A 1 84 SER 84 119 119 SER SER A . n A 1 85 PRO 85 120 120 PRO PRO A . n A 1 86 ASP 86 121 121 ASP ASP A . n A 1 87 GLY 87 122 122 GLY GLY A . n A 1 88 GLN 88 123 123 GLN GLN A . n A 1 89 TYR 89 124 124 TYR TYR A . n A 1 90 VAL 90 125 125 VAL VAL A . n A 1 91 PRO 91 126 126 PRO PRO A . n A 1 92 ARG 92 127 127 ARG ARG A . n A 1 93 ILE 93 128 128 ILE ILE A . n A 1 94 MET 94 129 129 MET MET A . n A 1 95 PHE 95 130 130 PHE PHE A . n A 1 96 VAL 96 131 131 VAL VAL A . n A 1 97 ASP 97 132 132 ASP ASP A . n A 1 98 PRO 98 133 133 PRO PRO A . n A 1 99 SER 99 134 134 SER SER A . n A 1 100 LEU 100 135 135 LEU LEU A . n A 1 101 THR 101 136 136 THR THR A . n A 1 102 VAL 102 137 137 VAL VAL A . n A 1 103 ARG 103 138 138 ARG ARG A . n A 1 104 ALA 104 139 139 ALA ALA A . n A 1 105 ASP 105 140 140 ASP ASP A . n A 1 106 ILE 106 141 141 ILE ILE A . n A 1 107 THR 107 142 142 THR THR A . n A 1 108 GLY 108 143 143 GLY GLY A . n A 1 109 ARG 109 144 144 ARG ARG A . n A 1 110 TYR 110 145 145 TYR TYR A . n A 1 111 SER 111 146 146 SER SER A . n A 1 112 ASN 112 147 147 ASN ASN A . n A 1 113 ARG 113 148 148 ARG ARG A . n A 1 114 LEU 114 149 149 LEU LEU A . n A 1 115 TYR 115 150 150 TYR TYR A . n A 1 116 ALA 116 151 151 ALA ALA A . n A 1 117 TYR 117 152 152 TYR TYR A . n A 1 118 GLU 118 153 153 GLU GLU A . n A 1 119 PRO 119 154 154 PRO PRO A . n A 1 120 ALA 120 155 155 ALA ALA A . n A 1 121 ASP 121 156 156 ASP ASP A . n A 1 122 THR 122 157 157 THR THR A . n A 1 123 ALA 123 158 158 ALA ALA A . n A 1 124 LEU 124 159 159 LEU LEU A . n A 1 125 LEU 125 160 160 LEU LEU A . n A 1 126 LEU 126 161 161 LEU LEU A . n A 1 127 ASP 127 162 162 ASP ASP A . n A 1 128 ASN 128 163 163 ASN ASN A . n A 1 129 MET 129 164 164 MET MET A . n A 1 130 LYS 130 165 165 LYS LYS A . n A 1 131 LYS 131 166 166 LYS LYS A . n A 1 132 ALA 132 167 167 ALA ALA A . n A 1 133 LEU 133 168 168 LEU LEU A . n A 1 134 LYS 134 169 169 LYS LYS A . n A 1 135 LEU 135 170 170 LEU LEU A . n A 1 136 LEU 136 171 171 LEU LEU A . n A 1 137 LYS 137 172 172 LYS LYS A . n A 1 138 THR 138 173 173 THR THR A . n A 1 139 GLU 139 174 174 GLU GLU A . n A 1 140 LEU 140 175 175 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-09 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2013-03-06 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'AGR2 E60A-1' 0.3 ? mM '[U-13C; U-15N]' 1 'AGR2 E60A-2' 0.3 ? mM '[U-15N]' 2 'Pf1 phage-3' 10 ? mg/mL ? 2 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 5 _pdbx_validate_close_contact.auth_atom_id_1 HH21 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 127 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 140 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 44 ? ? 69.91 -69.37 2 1 ARG A 46 ? ? 64.40 91.56 3 1 LEU A 52 ? ? 62.17 -94.84 4 1 ILE A 53 ? ? 171.73 -34.46 5 1 TRP A 54 ? ? 75.05 -48.38 6 1 PRO A 82 ? ? -37.00 122.86 7 1 TYR A 111 ? ? -179.95 119.26 8 1 GLU A 112 ? ? 70.05 118.33 9 1 THR A 114 ? ? -119.17 78.48 10 1 TYR A 124 ? ? 171.40 151.76 11 1 PRO A 126 ? ? -66.26 -146.78 12 1 ARG A 127 ? ? 171.50 -43.09 13 1 THR A 136 ? ? -124.29 -166.21 14 1 ASN A 147 ? ? -158.21 55.74 15 1 ARG A 148 ? ? 75.16 139.80 16 1 PRO A 154 ? ? -42.08 -17.13 17 1 LEU A 160 ? ? -39.49 -35.66 18 1 LYS A 169 ? ? 58.08 -73.64 19 1 THR A 173 ? ? 78.37 -55.06 20 2 LEU A 44 ? ? -147.94 -50.75 21 2 SER A 45 ? ? 73.51 129.62 22 2 THR A 55 ? ? 66.38 87.44 23 2 ASN A 69 ? ? 54.28 82.08 24 2 GLU A 80 ? ? -85.48 33.67 25 2 VAL A 110 ? ? -90.03 47.53 26 2 TYR A 111 ? ? 79.64 80.10 27 2 GLU A 112 ? ? -151.10 -76.26 28 2 THR A 114 ? ? -156.70 25.27 29 2 PRO A 126 ? ? -25.70 100.42 30 2 ARG A 127 ? ? -163.07 -162.74 31 2 ALA A 139 ? ? -113.52 67.51 32 2 ARG A 148 ? ? 45.64 90.06 33 2 TYR A 152 ? ? -113.55 -129.59 34 2 GLU A 153 ? ? 52.99 165.94 35 2 THR A 173 ? ? -45.90 152.92 36 3 ASP A 37 ? ? 65.73 106.29 37 3 GLN A 42 ? ? 68.52 174.26 38 3 ASP A 50 ? ? 67.46 -172.94 39 3 LEU A 52 ? ? 68.08 -86.76 40 3 GLU A 112 ? ? -157.54 -53.36 41 3 VAL A 125 ? ? -85.27 -75.64 42 3 PRO A 126 ? ? -47.77 93.17 43 3 ARG A 127 ? ? 174.44 -177.06 44 3 LEU A 135 ? ? 70.27 67.22 45 3 ALA A 139 ? ? -90.28 57.00 46 3 TYR A 152 ? ? -156.20 10.37 47 3 ASP A 156 ? ? -76.49 23.28 48 3 LYS A 172 ? ? -159.90 71.29 49 4 SER A 45 ? ? 70.43 78.28 50 4 TRP A 54 ? ? -73.02 -71.94 51 4 LYS A 95 ? ? -43.42 -18.92 52 4 PHE A 104 ? ? -120.21 -166.08 53 4 VAL A 110 ? ? 169.26 -48.61 54 4 THR A 113 ? ? 72.95 73.46 55 4 LEU A 118 ? ? -91.71 32.20 56 4 SER A 119 ? ? 52.47 87.90 57 4 PRO A 126 ? ? -38.08 108.80 58 4 MET A 129 ? ? -105.32 -169.60 59 4 PRO A 133 ? ? -48.70 -16.49 60 4 ALA A 139 ? ? -111.43 -79.15 61 4 ARG A 144 ? ? -87.95 -139.01 62 4 GLU A 153 ? ? 110.14 164.28 63 4 LYS A 169 ? ? 75.76 -68.64 64 4 LYS A 172 ? ? 44.76 84.87 65 5 ASP A 37 ? ? 73.80 112.50 66 5 PHE A 39 ? ? 64.11 87.18 67 5 TRP A 48 ? ? 68.86 -63.96 68 5 GLN A 51 ? ? 58.24 83.05 69 5 ASN A 69 ? ? 68.77 -9.34 70 5 THR A 113 ? ? -85.76 46.81 71 5 ARG A 127 ? ? -175.38 148.32 72 5 PRO A 133 ? ? -59.87 -8.26 73 5 LEU A 135 ? ? 153.13 13.18 74 5 ALA A 139 ? ? 69.53 -22.57 75 5 ASP A 140 ? ? 68.13 102.01 76 5 THR A 142 ? ? -69.26 -174.38 77 5 GLU A 153 ? ? 47.70 178.87 78 5 PRO A 154 ? ? -58.00 -0.53 79 5 LYS A 172 ? ? 62.29 99.65 80 5 GLU A 174 ? ? -142.64 -59.19 81 6 PHE A 39 ? ? 66.35 93.19 82 6 PRO A 41 ? ? -73.64 -153.94 83 6 LEU A 44 ? ? 63.67 74.07 84 6 ASP A 50 ? ? 71.99 158.50 85 6 TYR A 58 ? ? -78.46 -71.26 86 6 ASN A 69 ? ? 119.49 62.21 87 6 PRO A 82 ? ? -38.76 123.10 88 6 VAL A 110 ? ? -171.98 -16.48 89 6 TYR A 111 ? ? -78.15 -73.15 90 6 THR A 113 ? ? 175.72 -77.57 91 6 THR A 114 ? ? 59.16 79.89 92 6 VAL A 125 ? ? -40.97 165.58 93 6 PRO A 126 ? ? -7.91 92.06 94 6 ALA A 139 ? ? -53.87 89.44 95 6 ARG A 144 ? ? 80.25 177.27 96 6 ASN A 147 ? ? -59.34 3.35 97 6 ARG A 148 ? ? -169.98 24.52 98 6 LEU A 171 ? ? -160.61 86.28 99 6 LYS A 172 ? ? 49.22 87.12 100 6 THR A 173 ? ? -99.54 -83.83 101 7 ARG A 46 ? ? -175.21 -17.54 102 7 GLN A 51 ? ? -89.77 -76.64 103 7 ASN A 69 ? ? 63.51 75.18 104 7 ASP A 79 ? ? -90.57 -67.31 105 7 GLU A 112 ? ? -85.00 -157.25 106 7 PRO A 133 ? ? -56.31 -8.56 107 7 ASP A 140 ? ? -145.13 -51.20 108 7 ASN A 147 ? ? 172.85 111.82 109 7 ARG A 148 ? ? 88.25 89.14 110 7 LYS A 169 ? ? -149.45 44.47 111 8 TRP A 48 ? ? -77.77 -83.84 112 8 TRP A 54 ? ? -68.04 94.25 113 8 THR A 57 ? ? 70.81 114.83 114 8 PHE A 104 ? ? -119.89 -165.75 115 8 VAL A 110 ? ? -126.84 -63.43 116 8 VAL A 125 ? ? -52.82 107.47 117 8 ARG A 127 ? ? 64.73 -88.61 118 8 THR A 136 ? ? 74.10 -177.22 119 8 ASP A 140 ? ? 44.51 98.46 120 8 ARG A 148 ? ? -162.46 92.19 121 9 ASP A 37 ? ? 66.59 102.24 122 9 PRO A 41 ? ? -57.45 -70.41 123 9 GLN A 42 ? ? -157.96 -51.43 124 9 THR A 43 ? ? 58.75 82.84 125 9 ARG A 46 ? ? 65.32 178.20 126 9 THR A 113 ? ? 61.87 85.80 127 9 SER A 119 ? ? 50.81 93.11 128 9 PRO A 126 ? ? -66.66 95.36 129 9 ARG A 127 ? ? -173.34 -176.05 130 9 THR A 136 ? ? -172.32 139.04 131 9 THR A 142 ? ? -178.81 -172.98 132 9 ASN A 147 ? ? -160.93 75.65 133 9 ARG A 148 ? ? 39.85 74.38 134 9 LYS A 169 ? ? 67.50 -168.71 135 10 GLN A 42 ? ? -178.39 -33.77 136 10 LEU A 44 ? ? 64.98 74.16 137 10 SER A 45 ? ? -140.54 21.47 138 10 TRP A 48 ? ? 68.69 149.51 139 10 ASP A 50 ? ? -166.52 95.53 140 10 ILE A 53 ? ? 62.41 83.38 141 10 GLU A 80 ? ? -77.99 35.89 142 10 SER A 119 ? ? 177.04 147.33 143 10 ASP A 121 ? ? -75.75 32.91 144 10 VAL A 125 ? ? -95.24 -119.42 145 10 PRO A 126 ? ? -11.57 83.37 146 10 ASN A 147 ? ? -57.24 -84.27 147 10 PRO A 154 ? ? -39.65 -19.31 #