HEADER TRANSCRIPTION/HYDROLASE 27-JAN-12 2LOX TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT TITLE 2 FROM TFIIH AND RAD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 SYNONYM: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 6 TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 COMPND 7 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA REPAIR PROTEIN RAD2; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 642-690; COMPND 13 EC: 3.1.-.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: D9740.3, TFB1, YDR311W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2TK; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: RAD2, YGR258C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PGEX-2TK KEYWDS TRANSCRIPTION-HYDROLASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LAFRANCE-VANASSE,P.LEGAULT,J.OMICHINSKI REVDAT 4 14-JUN-23 2LOX 1 REMARK SEQADV REVDAT 3 11-JUL-12 2LOX 1 JRNL REVDAT 2 21-MAR-12 2LOX 1 JRNL REVDAT 1 15-FEB-12 2LOX 0 JRNL AUTH J.LAFRANCE-VANASSE,G.ARSENEAULT,L.CAPPADOCIA,H.T.CHEN, JRNL AUTH 2 P.LEGAULT,J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF INTERACTIONS JRNL TITL 2 INVOLVING THE TFB1 SUBUNIT OF TFIIH AND THE NER FACTOR RAD2. JRNL REF NUCLEIC ACIDS RES. V. 40 5739 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22373916 JRNL DOI 10.1093/NAR/GKS194 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR 2.1, CNS REMARK 3 AUTHORS : CCPN (CCPNMR), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102650. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 TFB1, 1.25 MM RAD2, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] TFB1, 1.25 MM REMARK 210 RAD2, 20 MM SODIUM PHOSPHATE, 1 REMARK 210 MM EDTA, 1 MM DTT, 100% D2O; 1 REMARK 210 MM [U-100% 15N] TFB1, 1.25 MM REMARK 210 RAD2, 20 MM SODIUM PHOSPHATE, 1 REMARK 210 MM EDTA, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 1.25 MM TFB1, 1 MM [U-100% REMARK 210 13C; U-100% 15N] RAD2, 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM EDTA, 1 REMARK 210 MM DTT, 90% H2O/10% D2O; 1.25 MM REMARK 210 TFB1, 1 MM [U-100% 13C; U-100% REMARK 210 15N] RAD2, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 100% D2O; 1.25 MM TFB1, 1 MM [U- REMARK 210 100% 15N] RAD2, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR 2.1, NMRPIPE, NMRDRAW, REMARK 210 NMRVIEW, CNS, VNMR, TALOS, VNMRJ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 ASN A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLY B 640 REMARK 465 SER B 641 REMARK 465 GLU B 642 REMARK 465 ILE B 643 REMARK 465 LEU B 644 REMARK 465 GLU B 645 REMARK 465 ARG B 646 REMARK 465 GLU B 647 REMARK 465 SER B 648 REMARK 465 GLU B 649 REMARK 465 LYS B 650 REMARK 465 GLU B 651 REMARK 465 SER B 652 REMARK 465 SER B 653 REMARK 465 ASN B 654 REMARK 465 ASP B 655 REMARK 465 GLU B 656 REMARK 465 ASN B 657 REMARK 465 LYS B 658 REMARK 465 ASP B 659 REMARK 465 ASP B 660 REMARK 465 LYS B 681 REMARK 465 GLU B 682 REMARK 465 ALA B 683 REMARK 465 GLU B 684 REMARK 465 ASP B 685 REMARK 465 ASN B 686 REMARK 465 ASP B 687 REMARK 465 SER B 688 REMARK 465 ARG B 689 REMARK 465 LYS B 690 REMARK 465 TYR B 691 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 15 O ARG A 30 1.49 REMARK 500 O GLN A 49 H ARG A 61 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 -3.76 72.25 REMARK 500 1 VAL A 22 -162.56 -100.87 REMARK 500 1 SER A 23 101.05 -177.98 REMARK 500 1 ALA A 25 -172.38 -55.29 REMARK 500 1 SER A 31 155.99 -49.85 REMARK 500 1 ILE A 45 105.73 -56.40 REMARK 500 1 ASP A 67 47.45 -99.90 REMARK 500 1 LYS A 70 -70.18 -77.17 REMARK 500 1 LYS A 71 81.43 42.63 REMARK 500 1 ASN A 75 -30.30 167.89 REMARK 500 1 ASN A 78 -152.61 -67.20 REMARK 500 1 VAL A 80 -66.90 -94.38 REMARK 500 1 VAL A 81 80.20 33.15 REMARK 500 1 ASN A 92 34.83 -99.24 REMARK 500 1 ASN A 93 118.06 -178.99 REMARK 500 1 GLU B 663 95.67 -177.36 REMARK 500 1 VAL B 664 59.89 -142.64 REMARK 500 1 SER B 666 92.78 -169.45 REMARK 500 1 LYS B 676 155.97 -48.34 REMARK 500 1 SER B 677 155.25 61.58 REMARK 500 1 ILE B 679 43.28 -95.75 REMARK 500 2 LYS A 11 -4.25 71.19 REMARK 500 2 VAL A 22 -162.93 -101.90 REMARK 500 2 SER A 23 101.51 -174.75 REMARK 500 2 SER A 31 168.50 -49.90 REMARK 500 2 ILE A 45 105.69 -57.15 REMARK 500 2 LYS A 71 92.35 60.17 REMARK 500 2 ASN A 78 -169.95 -67.42 REMARK 500 2 VAL A 80 -64.91 -91.10 REMARK 500 2 VAL A 81 78.09 34.85 REMARK 500 2 ASN A 93 112.16 -171.59 REMARK 500 2 GLU B 663 79.60 -176.36 REMARK 500 2 VAL B 664 95.72 66.09 REMARK 500 2 SER B 666 83.13 47.16 REMARK 500 2 GLN B 678 89.83 -177.96 REMARK 500 3 LYS A 11 -6.25 72.82 REMARK 500 3 VAL A 22 -162.34 -103.46 REMARK 500 3 SER A 23 101.60 -176.29 REMARK 500 3 ALA A 25 178.23 -54.64 REMARK 500 3 SER A 31 153.89 -49.96 REMARK 500 3 LYS A 70 -40.78 -135.76 REMARK 500 3 LYS A 71 95.44 63.45 REMARK 500 3 ASN A 75 -28.42 165.41 REMARK 500 3 GLU A 79 108.81 55.64 REMARK 500 3 GLN A 85 172.57 -57.49 REMARK 500 3 ASN A 93 120.68 -176.42 REMARK 500 3 LEU B 662 87.53 -173.99 REMARK 500 3 GLU B 663 95.49 -176.89 REMARK 500 3 VAL B 664 40.59 -150.88 REMARK 500 3 SER B 666 96.60 -177.61 REMARK 500 REMARK 500 THIS ENTRY HAS 341 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GS0 RELATED DB: PDB REMARK 900 RELATED ID: 2L2I RELATED DB: PDB REMARK 900 RELATED ID: 1Y5O RELATED DB: PDB REMARK 900 RELATED ID: 6225 RELATED DB: BMRB REMARK 900 RELATED ID: 2K2U RELATED DB: PDB REMARK 900 RELATED ID: 18229 RELATED DB: BMRB DBREF 2LOX A 2 115 UNP P32776 TFB1_YEAST 2 115 DBREF 2LOX B 642 690 UNP P07276 RAD2_YEAST 642 690 SEQADV 2LOX PRO A 1 UNP P32776 EXPRESSION TAG SEQADV 2LOX GLY A 116 UNP P32776 EXPRESSION TAG SEQADV 2LOX ASN A 117 UNP P32776 EXPRESSION TAG SEQADV 2LOX SER A 118 UNP P32776 EXPRESSION TAG SEQADV 2LOX SER A 119 UNP P32776 EXPRESSION TAG SEQADV 2LOX GLY B 640 UNP P07276 EXPRESSION TAG SEQADV 2LOX SER B 641 UNP P07276 EXPRESSION TAG SEQADV 2LOX TYR B 691 UNP P07276 EXPRESSION TAG SEQRES 1 A 119 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 119 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 119 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 119 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 119 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 119 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 119 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 119 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 119 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP GLY ASN SEQRES 10 A 119 SER SER SEQRES 1 B 52 GLY SER GLU ILE LEU GLU ARG GLU SER GLU LYS GLU SER SEQRES 2 B 52 SER ASN ASP GLU ASN LYS ASP ASP ASP LEU GLU VAL LEU SEQRES 3 B 52 SER GLU GLU LEU PHE GLU ASP VAL PRO THR LYS SER GLN SEQRES 4 B 52 ILE SER LYS GLU ALA GLU ASP ASN ASP SER ARG LYS TYR HELIX 1 1 ASN A 93 ASP A 115 1 23 SHEET 1 A 4 SER A 4 PHE A 9 0 SHEET 2 A 4 VAL A 12 ALA A 17 -1 O ILE A 16 N GLY A 5 SHEET 3 A 4 LEU A 27 SER A 31 -1 O ARG A 30 N ILE A 15 SHEET 4 A 4 VAL A 37 VAL A 40 -1 O VAL A 40 N LEU A 27 SHEET 1 B 3 ILE A 45 ALA A 50 0 SHEET 2 B 3 MET A 59 GLY A 64 -1 O ARG A 61 N GLN A 49 SHEET 3 B 3 GLN A 85 SER A 90 -1 O HIS A 87 N LEU A 62 CISPEP 1 SER A 23 PRO A 24 1 0.37 CISPEP 2 SER A 23 PRO A 24 2 0.47 CISPEP 3 SER A 23 PRO A 24 3 0.43 CISPEP 4 SER A 23 PRO A 24 4 0.55 CISPEP 5 SER A 23 PRO A 24 5 0.35 CISPEP 6 SER A 23 PRO A 24 6 0.40 CISPEP 7 SER A 23 PRO A 24 7 0.36 CISPEP 8 SER A 23 PRO A 24 8 0.37 CISPEP 9 SER A 23 PRO A 24 9 0.32 CISPEP 10 SER A 23 PRO A 24 10 0.28 CISPEP 11 SER A 23 PRO A 24 11 0.36 CISPEP 12 SER A 23 PRO A 24 12 0.47 CISPEP 13 SER A 23 PRO A 24 13 0.45 CISPEP 14 SER A 23 PRO A 24 14 0.30 CISPEP 15 SER A 23 PRO A 24 15 0.47 CISPEP 16 SER A 23 PRO A 24 16 0.41 CISPEP 17 SER A 23 PRO A 24 17 0.28 CISPEP 18 SER A 23 PRO A 24 18 0.40 CISPEP 19 SER A 23 PRO A 24 19 0.30 CISPEP 20 SER A 23 PRO A 24 20 0.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1