HEADER CELL ADHESION 14-MAR-12 2LQU TITLE STRUCTURE OF DECORBIN-BINDING PROTEIN A FROM BORRELIA BURGDORFERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECORIN-BINDING PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-191; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_COMMON: LYME DISEASE SPIROCHETE; SOURCE 4 ORGANISM_TAXID: 139; SOURCE 5 STRAIN: B31; SOURCE 6 GENE: BB_A24, DBPA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: B21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PHUE KEYWDS GAG-BINDING PROTEIN, HELICAL BUNDLE PROTEIN, LYME DISEASE, BACTERIAL KEYWDS 2 ADHESIN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.WANG REVDAT 2 14-JUN-23 2LQU 1 REMARK SEQADV REVDAT 1 16-JAN-13 2LQU 0 JRNL AUTH X.WANG JRNL TITL SOLUTION STRUCTURE OF DECORIN-BINDING PROTEIN A FROM JRNL TITL 2 BORRELIA BURGDORFERI. JRNL REF BIOCHEMISTRY V. 51 8353 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22985470 JRNL DOI 10.1021/BI3007093 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REFINEMENT WITH RDCS REMARK 4 REMARK 4 2LQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000102718. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 DBPA, 50 MM SODIUM PHOSPHATE, 10 REMARK 210 % D2O, 90% H2O/10% D2O; 0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] DBPA, REMARK 210 50 MM SODIUM PHOSPHATE, 10 % D2O, REMARK 210 5 % POLYACRYLAMIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D HCCH- REMARK 210 TOCSY; J-MODULATED 15N HSQC; JNC- REMARK 210 MODULATED 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA 800 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 25 82.29 -68.21 REMARK 500 1 LEU A 27 -44.90 -141.20 REMARK 500 1 THR A 28 -149.10 40.37 REMARK 500 1 PHE A 60 72.93 52.88 REMARK 500 1 ASP A 61 -99.00 172.23 REMARK 500 1 ASP A 65 -94.79 49.79 REMARK 500 1 SER A 70 80.70 53.43 REMARK 500 1 SER A 73 -59.24 70.61 REMARK 500 1 GLU A 74 91.92 -68.75 REMARK 500 1 ASN A 75 98.33 -18.82 REMARK 500 1 PRO A 76 0.03 -51.05 REMARK 500 1 LYS A 104 -50.31 -25.52 REMARK 500 1 GLU A 105 165.34 -47.72 REMARK 500 1 THR A 106 -75.90 55.29 REMARK 500 1 SER A 108 138.06 70.31 REMARK 500 1 ILE A 131 -71.56 -105.81 REMARK 500 1 GLU A 133 44.44 -88.09 REMARK 500 1 PRO A 146 105.41 -42.79 REMARK 500 1 PRO A 147 101.66 -45.26 REMARK 500 1 SER A 181 -97.08 51.07 REMARK 500 1 THR A 182 -115.85 -72.04 REMARK 500 1 PHE A 183 83.69 41.75 REMARK 500 1 THR A 184 35.72 -80.08 REMARK 500 1 ASP A 185 79.89 -157.32 REMARK 500 1 CYS A 188 69.53 60.38 REMARK 500 2 LEU A 27 38.79 -88.67 REMARK 500 2 THR A 28 -32.83 -35.80 REMARK 500 2 ASP A 61 -51.21 60.99 REMARK 500 2 ALA A 62 81.88 60.99 REMARK 500 2 LYS A 64 -60.18 -149.84 REMARK 500 2 ASP A 65 -23.64 -159.73 REMARK 500 2 THR A 68 -85.88 -105.19 REMARK 500 2 SER A 70 135.02 -174.68 REMARK 500 2 VAL A 72 -88.10 -116.77 REMARK 500 2 GLU A 74 -175.11 168.00 REMARK 500 2 LYS A 104 -47.00 -23.31 REMARK 500 2 GLU A 105 -154.27 -53.96 REMARK 500 2 ILE A 131 81.78 21.79 REMARK 500 2 GLN A 132 74.88 -106.51 REMARK 500 2 GLU A 133 -6.81 174.81 REMARK 500 2 GLU A 143 -119.47 -60.48 REMARK 500 2 GLU A 144 -82.98 18.54 REMARK 500 2 THR A 148 22.05 -77.88 REMARK 500 2 THR A 182 96.12 -60.44 REMARK 500 2 GLU A 186 -49.18 -136.63 REMARK 500 2 LYS A 187 105.24 54.84 REMARK 500 2 LYS A 189 -104.16 46.63 REMARK 500 2 ASN A 190 -69.41 -125.23 REMARK 500 3 LEU A 27 136.09 -17.95 REMARK 500 3 THR A 28 45.33 -152.03 REMARK 500 REMARK 500 THIS ENTRY HAS 246 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18329 RELATED DB: BMRB DBREF 2LQU A 24 191 UNP O50917 DBPA_BORBU 24 191 SEQADV 2LQU ALA A 25 UNP O50917 CYS 25 ENGINEERED MUTATION SEQRES 1 A 168 SER ALA GLY LEU THR GLY ALA THR LYS ILE ARG LEU GLU SEQRES 2 A 168 ARG SER ALA LYS ASP ILE THR ASP GLU ILE ASP ALA ILE SEQRES 3 A 168 LYS LYS ASP ALA ALA LEU LYS GLY VAL ASN PHE ASP ALA SEQRES 4 A 168 PHE LYS ASP LYS LYS THR GLY SER GLY VAL SER GLU ASN SEQRES 5 A 168 PRO PHE ILE LEU GLU ALA LYS VAL ARG ALA THR THR VAL SEQRES 6 A 168 ALA GLU LYS PHE VAL ILE ALA ILE GLU GLU GLU ALA THR SEQRES 7 A 168 LYS LEU LYS GLU THR GLY SER SER GLY GLU PHE SER ALA SEQRES 8 A 168 MET TYR ASP LEU MET PHE GLU VAL SER LYS PRO LEU GLN SEQRES 9 A 168 LYS LEU GLY ILE GLN GLU MET THR LYS THR VAL SER ASP SEQRES 10 A 168 ALA ALA GLU GLU ASN PRO PRO THR THR ALA GLN GLY VAL SEQRES 11 A 168 LEU GLU ILE ALA LYS LYS MET ARG GLU LYS LEU GLN ARG SEQRES 12 A 168 VAL HIS THR LYS ASN TYR CYS THR LEU LYS LYS LYS GLU SEQRES 13 A 168 ASN SER THR PHE THR ASP GLU LYS CYS LYS ASN ASN HELIX 1 1 ALA A 30 LYS A 56 1 27 HELIX 2 2 ASN A 75 LYS A 104 1 30 HELIX 3 3 GLY A 107 GLY A 130 1 24 HELIX 4 4 GLU A 133 ASN A 145 1 13 HELIX 5 5 THR A 149 LYS A 176 1 28 HELIX 6 6 LYS A 176 SER A 181 1 6 SSBOND 1 CYS A 173 CYS A 188 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1