data_2LSC # _entry.id 2LSC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LSC pdb_00002lsc 10.2210/pdb2lsc/pdb RCSB RCSB102772 ? ? BMRB 18427 ? ? WWPDB D_1000102772 ? ? # _pdbx_database_related.db_id 18427 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LSC _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-26 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martin-Pintado, N.' 1 'Yahyaee, M.' 2 'Campos, R.' 3 'Noronha, A.' 4 'Wilds, C.' 5 'Damha, M.' 6 'Gonzalez, C.' 7 # _citation.id primary _citation.title ;The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 9329 _citation.page_last 9339 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22798499 _citation.pdbx_database_id_DOI 10.1093/nar/gks672 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martin-Pintado, N.' 1 ? primary 'Yahyaee-Anzahaee, M.' 2 ? primary 'Campos-Olivas, R.' 3 ? primary 'Noronha, A.M.' 4 ? primary 'Wilds, C.J.' 5 ? primary 'Damha, M.J.' 6 ? primary 'Gonzalez, C.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL)P*(A5O)P*(A5O)P*(UAR)P*(UAR)P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3') ; _entity.formula_weight 3843.264 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CFL)(GFL)(CFL)(GFL)(A5O)(A5O)(UAR)(UAR)(CFL)(GFL)(CFL)(GFL)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAAUUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CFL n 1 2 GFL n 1 3 CFL n 1 4 GFL n 1 5 A5O n 1 6 A5O n 1 7 UAR n 1 8 UAR n 1 9 CFL n 1 10 GFL n 1 11 CFL n 1 12 GFL n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LSC _struct_ref.pdbx_db_accession 2LSC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LSC A 1 ? 12 ? 2LSC 1 ? 12 ? 1 12 2 1 2LSC B 1 ? 12 ? 2LSC 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A5O 'RNA linking' n ;ADENINE ARABINOSE-5'-PHOSPHATE ; ? 'C10 H14 N5 O7 P' 347.221 CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 GFL 'DNA linking' n '2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE' "2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H13 F N5 O7 P' 365.212 UAR 'RNA linking' n ;URACIL ARABINOSE-5'-PHOSPHATE ; ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 2 '2D 1H-1H TOCSY' 1 3 2 '2D DQF-COSY' 1 4 2 '2D 1H-19F HOESY' 1 5 2 '2D 1H-1H NOESY' 1 6 1 '2D 1H-1H TOCSY' 2 7 1 '2D 1H-1H NOESY' 2 8 2 '2D 1H-1H NOESY' 2 9 2 '2D 1H-19F HOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 100 7.0 ambient ? 298 K 2 100 7.0 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;25 mM potassium phosphate, 0.8 mM DNA/RNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL))-R(P*(A5O)P*(A5O)P*(UAR)P*(UAR))-D(P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3'), 100 mM sodium chloride, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;25 mM potassium phosphate, 100 mM sodium chloride, 0.8 mM DNA/RNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL))-R(P*(A5O)P*(A5O)P*(UAR)P*(UAR))-D(P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3'), 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LSC _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LSC _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LSC _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' 'structure solution' Amber ? 1 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL ? 2 Goddard 'peak picking' Sparky ? 3 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman' refinement Amber ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LSC _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LSC _struct.title ;Solution structure of 2'F-ANA and ANA self-complementary duplex ; _struct.pdbx_model_details 'closest to the average, model 13' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LSC _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, Dickerson Drew dodecamer' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A UAR 7 "O3'" ? ? ? 1_555 A UAR 8 P ? ? A UAR 7 A UAR 8 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale2 covale both ? A UAR 8 "O3'" ? ? ? 1_555 A CFL 9 P ? ? A UAR 8 A CFL 9 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale3 covale both ? B UAR 7 "O3'" ? ? ? 1_555 B UAR 8 P ? ? B UAR 19 B UAR 20 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? B UAR 8 "O3'" ? ? ? 1_555 B CFL 9 P ? ? B UAR 20 B CFL 21 1_555 ? ? ? ? ? ? ? 1.615 ? ? hydrog1 hydrog ? ? A CFL 1 N3 ? ? ? 1_555 B GFL 12 N1 ? ? A CFL 1 B GFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CFL 1 N4 ? ? ? 1_555 B GFL 12 O6 ? ? A CFL 1 B GFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CFL 1 O2 ? ? ? 1_555 B GFL 12 N2 ? ? A CFL 1 B GFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A GFL 2 N1 ? ? ? 1_555 B CFL 11 N3 ? ? A GFL 2 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A GFL 2 N2 ? ? ? 1_555 B CFL 11 O2 ? ? A GFL 2 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A GFL 2 O6 ? ? ? 1_555 B CFL 11 N4 ? ? A GFL 2 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CFL 3 N3 ? ? ? 1_555 B GFL 10 N1 ? ? A CFL 3 B GFL 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CFL 3 N4 ? ? ? 1_555 B GFL 10 O6 ? ? A CFL 3 B GFL 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CFL 3 O2 ? ? ? 1_555 B GFL 10 N2 ? ? A CFL 3 B GFL 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A GFL 4 N1 ? ? ? 1_555 B CFL 9 N3 ? ? A GFL 4 B CFL 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A GFL 4 N2 ? ? ? 1_555 B CFL 9 O2 ? ? A GFL 4 B CFL 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A GFL 4 O6 ? ? ? 1_555 B CFL 9 N4 ? ? A GFL 4 B CFL 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A5O 5 N1 ? ? ? 1_555 B UAR 8 N3 ? ? A A5O 5 B UAR 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A5O 5 N6 ? ? ? 1_555 B UAR 8 O4 ? ? A A5O 5 B UAR 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A5O 6 N1 ? ? ? 1_555 B UAR 7 N3 ? ? A A5O 6 B UAR 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A5O 6 N6 ? ? ? 1_555 B UAR 7 O4 ? ? A A5O 6 B UAR 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A UAR 7 N3 ? ? ? 1_555 B A5O 6 N1 ? ? A UAR 7 B A5O 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A UAR 7 O4 ? ? ? 1_555 B A5O 6 N6 ? ? A UAR 7 B A5O 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A UAR 8 N3 ? ? ? 1_555 B A5O 5 N1 ? ? A UAR 8 B A5O 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A UAR 8 O4 ? ? ? 1_555 B A5O 5 N6 ? ? A UAR 8 B A5O 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A CFL 9 N3 ? ? ? 1_555 B GFL 4 N1 ? ? A CFL 9 B GFL 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A CFL 9 N4 ? ? ? 1_555 B GFL 4 O6 ? ? A CFL 9 B GFL 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A CFL 9 O2 ? ? ? 1_555 B GFL 4 N2 ? ? A CFL 9 B GFL 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A GFL 10 N1 ? ? ? 1_555 B CFL 3 N3 ? ? A GFL 10 B CFL 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A GFL 10 N2 ? ? ? 1_555 B CFL 3 O2 ? ? A GFL 10 B CFL 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A GFL 10 O6 ? ? ? 1_555 B CFL 3 N4 ? ? A GFL 10 B CFL 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A CFL 11 N3 ? ? ? 1_555 B GFL 2 N1 ? ? A CFL 11 B GFL 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A CFL 11 N4 ? ? ? 1_555 B GFL 2 O6 ? ? A CFL 11 B GFL 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A CFL 11 O2 ? ? ? 1_555 B GFL 2 N2 ? ? A CFL 11 B GFL 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A GFL 12 N1 ? ? ? 1_555 B CFL 1 N3 ? ? A GFL 12 B CFL 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A GFL 12 N2 ? ? ? 1_555 B CFL 1 O2 ? ? A GFL 12 B CFL 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A GFL 12 O6 ? ? ? 1_555 B CFL 1 N4 ? ? A GFL 12 B CFL 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2LSC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CFL 1 1 1 CFL CFL A . n A 1 2 GFL 2 2 2 GFL GFL A . n A 1 3 CFL 3 3 3 CFL CFL A . n A 1 4 GFL 4 4 4 GFL GFL A . n A 1 5 A5O 5 5 5 A5O A5O A . n A 1 6 A5O 6 6 6 A5O A5O A . n A 1 7 UAR 7 7 7 UAR UAR A . n A 1 8 UAR 8 8 8 UAR UAR A . n A 1 9 CFL 9 9 9 CFL CFL A . n A 1 10 GFL 10 10 10 GFL GFL A . n A 1 11 CFL 11 11 11 CFL CFL A . n A 1 12 GFL 12 12 12 GFL GFL A . n B 1 1 CFL 1 13 13 CFL CFL B . n B 1 2 GFL 2 14 14 GFL GFL B . n B 1 3 CFL 3 15 15 CFL CFL B . n B 1 4 GFL 4 16 16 GFL GFL B . n B 1 5 A5O 5 17 17 A5O A5O B . n B 1 6 A5O 6 18 18 A5O A5O B . n B 1 7 UAR 7 19 19 UAR UAR B . n B 1 8 UAR 8 20 20 UAR UAR B . n B 1 9 CFL 9 21 21 CFL CFL B . n B 1 10 GFL 10 22 22 GFL GFL B . n B 1 11 CFL 11 23 23 CFL CFL B . n B 1 12 GFL 12 24 24 GFL GFL B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CFL 1 A CFL 1 ? DC ? 2 A GFL 2 A GFL 2 ? DG ? 3 A CFL 3 A CFL 3 ? DC ? 4 A GFL 4 A GFL 4 ? DG ? 5 A A5O 5 A A5O 5 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 6 A A5O 6 A A5O 6 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 7 A UAR 7 A UAR 7 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 8 A UAR 8 A UAR 8 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 9 A CFL 9 A CFL 9 ? DC ? 10 A GFL 10 A GFL 10 ? DG ? 11 A CFL 11 A CFL 11 ? DC ? 12 A GFL 12 A GFL 12 ? DG ? 13 B CFL 1 B CFL 13 ? DC ? 14 B GFL 2 B GFL 14 ? DG ? 15 B CFL 3 B CFL 15 ? DC ? 16 B GFL 4 B GFL 16 ? DG ? 17 B A5O 5 B A5O 17 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 18 B A5O 6 B A5O 18 ? A ;ADENINE ARABINOSE-5'-PHOSPHATE ; 19 B UAR 7 B UAR 19 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 20 B UAR 8 B UAR 20 ? U ;URACIL ARABINOSE-5'-PHOSPHATE ; 21 B CFL 9 B CFL 21 ? DC ? 22 B GFL 10 B GFL 22 ? DG ? 23 B CFL 11 B CFL 23 ? DC ? 24 B GFL 12 B GFL 24 ? DG ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-18 2 'Structure model' 1 1 2012-10-24 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'potassium phosphate-1' 25 ? mM ? 1 ;DNA/RNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL))-R(P*(A5O)P*(A5O)P*(UAR)P*(UAR))-D(P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3')-2 ; 0.8 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 'potassium phosphate-4' 25 ? mM ? 2 'sodium chloride-5' 100 ? mM ? 2 ;DNA/RNA (5'-D(*(CFL)P*(GFL)P*(CFL)P*(GFL))-R(P*(A5O)P*(A5O)P*(UAR)P*(UAR))-D(P*(CFL)P*(GFL)P*(CFL)P*(GFL))-3')-6 ; 0.8 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LSC _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 64 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 194 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 83 _pdbx_nmr_constraints.NOE_long_range_total_count 32 _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 61 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LSC 'double helix' 2LSC 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A CFL 1 1_555 B GFL 12 1_555 0.220 -0.112 0.041 3.550 -12.671 0.404 1 A_CFL1:GFL24_B A 1 ? B 24 ? 19 1 1 A GFL 2 1_555 B CFL 11 1_555 -0.230 -0.142 0.048 -4.331 -3.666 -0.861 2 A_GFL2:CFL23_B A 2 ? B 23 ? 19 1 1 A CFL 3 1_555 B GFL 10 1_555 0.278 -0.161 0.097 2.858 -1.153 0.228 3 A_CFL3:GFL22_B A 3 ? B 22 ? 19 1 1 A GFL 4 1_555 B CFL 9 1_555 -0.426 -0.188 -0.206 -5.392 -13.413 1.173 4 A_GFL4:CFL21_B A 4 ? B 21 ? 19 1 1 A A5O 5 1_555 B UAR 8 1_555 0.103 -0.097 0.446 -9.186 -8.759 3.602 5 A_A5O5:UAR20_B A 5 ? B 20 ? 20 1 1 A A5O 6 1_555 B UAR 7 1_555 0.293 -0.190 0.917 1.050 -5.331 -1.876 6 A_A5O6:UAR19_B A 6 ? B 19 ? 20 1 1 A UAR 7 1_555 B A5O 6 1_555 -0.185 -0.240 0.919 -1.404 -7.656 -2.030 7 A_UAR7:A5O18_B A 7 ? B 18 ? 20 1 1 A UAR 8 1_555 B A5O 5 1_555 -0.287 -0.027 0.389 7.306 -12.290 3.533 8 A_UAR8:A5O17_B A 8 ? B 17 ? 20 1 1 A CFL 9 1_555 B GFL 4 1_555 0.498 -0.215 -0.132 4.865 -16.324 1.899 9 A_CFL9:GFL16_B A 9 ? B 16 ? 19 1 1 A GFL 10 1_555 B CFL 3 1_555 -0.197 -0.092 0.022 -6.039 0.414 -0.160 10 A_GFL10:CFL15_B A 10 ? B 15 ? 19 1 1 A CFL 11 1_555 B GFL 2 1_555 0.361 -0.149 0.200 -3.170 0.572 -0.446 11 A_CFL11:GFL14_B A 11 ? B 14 ? 19 1 1 A GFL 12 1_555 B CFL 1 1_555 -0.164 -0.121 0.157 -5.376 -12.961 -0.779 12 A_GFL12:CFL13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A CFL 1 1_555 B GFL 12 1_555 A GFL 2 1_555 B CFL 11 1_555 -0.055 -0.933 3.446 1.707 7.821 28.811 -3.461 0.468 3.083 15.348 -3.349 29.879 1 AA_CFL1GFL2:CFL23GFL24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A GFL 2 1_555 B CFL 11 1_555 A CFL 3 1_555 B GFL 10 1_555 -0.291 -0.170 3.143 0.376 0.854 35.860 -0.394 0.524 3.136 1.386 -0.611 35.871 2 AA_GFL2CFL3:GFL22CFL23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A CFL 3 1_555 B GFL 10 1_555 A GFL 4 1_555 B CFL 9 1_555 0.911 -0.659 3.343 5.070 7.823 36.924 -2.026 -0.739 3.235 12.116 -7.852 38.043 3 AA_CFL3GFL4:CFL21GFL22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A GFL 4 1_555 B CFL 9 1_555 A A5O 5 1_555 B UAR 8 1_555 0.261 -1.222 3.285 -4.069 0.987 31.771 -2.392 -1.201 3.190 1.793 7.393 32.039 4 AA_GFL4A5O5:UAR20CFL21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A A5O 5 1_555 B UAR 8 1_555 A A5O 6 1_555 B UAR 7 1_555 -0.650 -0.762 2.999 -2.834 -8.304 35.065 -0.112 0.668 3.134 -13.522 4.614 36.112 5 AA_A5O5A5O6:UAR19UAR20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A A5O 6 1_555 B UAR 7 1_555 A UAR 7 1_555 B A5O 6 1_555 -0.201 -1.319 3.345 -0.171 -6.278 33.578 -1.193 0.314 3.527 -10.750 0.292 34.144 6 AA_A5O6UAR7:A5O18UAR19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A UAR 7 1_555 B A5O 6 1_555 A UAR 8 1_555 B A5O 5 1_555 0.601 -0.824 2.931 4.010 -6.414 34.327 -0.474 -0.438 3.079 -10.706 -6.694 35.126 7 AA_UAR7UAR8:A5O17A5O18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A UAR 8 1_555 B A5O 5 1_555 A CFL 9 1_555 B GFL 4 1_555 0.359 -1.016 3.262 4.775 -0.493 30.750 -1.799 0.251 3.294 -0.923 -8.936 31.113 8 AA_UAR8CFL9:GFL16A5O17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A CFL 9 1_555 B GFL 4 1_555 A GFL 10 1_555 B CFL 3 1_555 -0.786 -0.203 3.395 -4.302 7.015 43.033 -0.972 0.625 3.383 9.459 5.801 43.776 9 AA_CFL9GFL10:CFL15GFL16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A GFL 10 1_555 B CFL 3 1_555 A CFL 11 1_555 B GFL 2 1_555 0.056 -0.493 3.326 -1.099 -1.902 36.479 -0.518 -0.245 3.343 -3.035 1.753 36.543 10 AA_GFL10CFL11:GFL14CFL15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A CFL 11 1_555 B GFL 2 1_555 A GFL 12 1_555 B CFL 1 1_555 -0.171 -0.757 3.241 -0.480 6.075 30.614 -2.528 0.230 3.040 11.364 0.897 31.200 11 AA_CFL11GFL12:CFL13GFL14_BB A 11 ? B 14 ? A 12 ? B 13 ? #