HEADER MEMBRANE PROTEIN 26-JUN-12 2LV1 TITLE SOLUTION-STATE NMR STRUCTURE OF PRION PROTEIN MUTANT V210I AT NEUTRAL TITLE 2 PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-231; COMPND 5 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPROEXHTA KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BILJAN,G.ILC,G.GIACHIN,G.LEGNAME,J.PLAVEC REVDAT 5 14-JUN-23 2LV1 1 SEQADV REVDAT 4 20-FEB-13 2LV1 1 JRNL REVDAT 3 30-JAN-13 2LV1 1 JRNL REVDAT 2 03-OCT-12 2LV1 1 JRNL REVDAT 1 19-SEP-12 2LV1 0 JRNL AUTH I.BILJAN,G.ILC,G.GIACHIN,J.PLAVEC,G.LEGNAME JRNL TITL STRUCTURAL REARRANGEMENTS AT PHYSIOLOGICAL PH: NUCLEAR JRNL TITL 2 MAGNETIC RESONANCE INSIGHTS FROM THE V210I HUMAN PRION JRNL TITL 3 PROTEIN MUTANT. JRNL REF BIOCHEMISTRY V. 51 7465 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22947063 JRNL DOI 10.1021/BI3009856 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, YASARA, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), ELMAR REMARK 3 KRIEGER (YASARA), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FINAL STEP OF STRUCTURE REFINEMENT REMARK 3 WAS PERFORMED IN EXPLICIT WATER-BOX, USED FOR AUTOMATED NMR REMARK 3 PROTEIN STRUCTURE CALCULATION REMARK 4 REMARK 4 2LV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102868. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 20 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 PRION PROTEIN MUTATION V210I, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-15N HSQC REMARK 210 NH2 ONLY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : YASARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 133 -173.95 -173.04 REMARK 500 1 ARG A 136 46.02 -154.71 REMARK 500 1 TYR A 149 -23.21 -163.47 REMARK 500 1 ASP A 167 89.99 -69.98 REMARK 500 1 ARG A 228 10.45 -144.27 REMARK 500 2 SER A 97 47.89 -148.03 REMARK 500 2 LYS A 110 -61.24 -121.51 REMARK 500 2 ALA A 133 -171.18 -172.96 REMARK 500 2 ARG A 136 43.18 -152.09 REMARK 500 2 TYR A 149 -25.87 -163.32 REMARK 500 2 ARG A 228 -41.51 -149.78 REMARK 500 3 MET A 87 -144.56 -113.10 REMARK 500 3 ALA A 117 -78.71 -100.33 REMARK 500 3 ARG A 136 55.56 -159.44 REMARK 500 3 TYR A 149 -28.24 -159.52 REMARK 500 3 PRO A 165 39.35 -76.16 REMARK 500 4 HIS A 96 -84.92 -96.76 REMARK 500 4 ASN A 108 67.33 -161.08 REMARK 500 4 ALA A 115 102.87 -160.69 REMARK 500 4 LEU A 125 -51.76 -124.57 REMARK 500 4 ALA A 133 -164.34 -171.98 REMARK 500 4 ARG A 136 44.24 -150.85 REMARK 500 4 TYR A 149 -13.87 -161.54 REMARK 500 4 TYR A 169 71.41 -116.41 REMARK 500 4 GLU A 196 -164.36 -102.99 REMARK 500 5 MET A 87 45.77 -143.36 REMARK 500 5 SER A 103 39.92 -81.44 REMARK 500 5 ALA A 133 -160.29 -161.90 REMARK 500 5 ARG A 136 47.63 -158.06 REMARK 500 5 TYR A 149 -11.92 -156.37 REMARK 500 5 PRO A 165 1.83 -69.68 REMARK 500 6 ALA A 133 -157.74 -168.52 REMARK 500 6 ARG A 136 45.81 -152.85 REMARK 500 6 TYR A 149 -21.29 -157.37 REMARK 500 7 LEU A 125 -36.02 -132.53 REMARK 500 7 ARG A 136 46.73 -156.26 REMARK 500 7 TYR A 149 -23.67 -156.27 REMARK 500 8 MET A 87 40.96 -152.82 REMARK 500 8 ALA A 117 -50.82 -144.62 REMARK 500 8 ARG A 136 46.64 -150.25 REMARK 500 8 TYR A 149 -21.43 -160.85 REMARK 500 8 ASP A 167 42.02 -109.86 REMARK 500 9 ALA A 116 14.48 59.16 REMARK 500 9 LEU A 125 -50.66 -142.56 REMARK 500 9 ALA A 133 -168.68 -164.88 REMARK 500 9 ARG A 136 43.13 -156.95 REMARK 500 9 TYR A 149 -13.40 -156.56 REMARK 500 9 PRO A 165 33.87 -77.49 REMARK 500 9 TYR A 169 91.70 -59.76 REMARK 500 9 SER A 170 -63.10 -153.44 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LEJ RELATED DB: PDB REMARK 900 RELATED ID: 18550 RELATED DB: BMRB DBREF 2LV1 A 90 231 UNP P04156 PRIO_HUMAN 90 231 SEQADV 2LV1 GLY A 85 UNP P04156 EXPRESSION TAG SEQADV 2LV1 ALA A 86 UNP P04156 EXPRESSION TAG SEQADV 2LV1 MET A 87 UNP P04156 EXPRESSION TAG SEQADV 2LV1 ASP A 88 UNP P04156 EXPRESSION TAG SEQADV 2LV1 PRO A 89 UNP P04156 EXPRESSION TAG SEQADV 2LV1 ILE A 210 UNP P04156 VAL 210 ENGINEERED MUTATION SEQRES 1 A 147 GLY ALA MET ASP PRO GLY GLN GLY GLY GLY THR HIS SER SEQRES 2 A 147 GLN TRP ASN LYS PRO SER LYS PRO LYS THR ASN MET LYS SEQRES 3 A 147 HIS MET ALA GLY ALA ALA ALA ALA GLY ALA VAL VAL GLY SEQRES 4 A 147 GLY LEU GLY GLY TYR MET LEU GLY SER ALA MET SER ARG SEQRES 5 A 147 PRO ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR SEQRES 6 A 147 TYR ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR SEQRES 7 A 147 TYR ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE SEQRES 8 A 147 VAL HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR SEQRES 9 A 147 VAL THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR SEQRES 10 A 147 ASP VAL LYS MET MET GLU ARG VAL ILE GLU GLN MET CYS SEQRES 11 A 147 ILE THR GLN TYR GLU ARG GLU SER GLN ALA TYR TYR GLN SEQRES 12 A 147 ARG GLY SER SER HELIX 1 1 SER A 143 TYR A 149 1 7 HELIX 2 2 TYR A 149 MET A 154 1 6 HELIX 3 3 ASN A 171 LYS A 194 1 24 HELIX 4 4 THR A 199 GLY A 229 1 31 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1