HEADER OXIDOREDUCTASE 28-JUN-12 2LV3 TITLE STRUCTURE-FUNCTIONAL CHARACTERIZATION OF GRX DOMAIN OF MUS MUSCULUS TITLE 2 TGR COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GRX DOMAIN, UNP RESIDUES 105-206; COMPND 5 SYNONYM: THIOREDOXIN AND GLUTATHIONE REDUCTASE, THIOREDOXIN REDUCTASE COMPND 6 TR2; COMPND 7 EC: 1.8.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TGR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS GRX, TGR, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.DOBROVOLSKA,E.SHUMILINA,V.GLADYSHEV,A.DIKIY REVDAT 3 14-JUN-23 2LV3 1 REMARK REVDAT 2 27-APR-16 2LV3 1 DBREF REMARK SEQADV REVDAT 1 22-MAY-13 2LV3 0 JRNL AUTH O.DOBROVOLSKA,E.SHUMILINA,V.N.GLADYSHEV,A.DIKIY JRNL TITL STRUCTURAL ANALYSIS OF GLUTAREDOXIN DOMAIN OF MUS MUSCULUS JRNL TITL 2 THIOREDOXIN GLUTATHIONE REDUCTASE JRNL REF PLOS ONE V. 7 52914 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23300818 JRNL DOI 10.1371/JOURNAL.PONE.0052914 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CYANA_2.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102870. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM [U-13C; U-15N] GRX DOMAIN OF REMARK 210 MUS MUSCULUS TGR-1, 10MM SODIUM REMARK 210 PHOSPHATE-2, 10MM BETA- REMARK 210 MERCAPTOETHANOL-3, 10MM SODIUM REMARK 210 CHLORIDE-4, 90% H2O-5, 10% D2O-6, REMARK 210 90% H2O/10% D2O; 1MM [U-13C; U- REMARK 210 15N] GRX DOMAIN OF MUS MUSCULUS REMARK 210 TGR-7, 10MM SODIUM PHOSPHATE-8, REMARK 210 10MM BETA-MERCAPTOETHANOL-9, REMARK 210 10MM SODIUM CHLORIDE-10, 100% [U- REMARK 210 100% 2H] D2O-11, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC ALIPHATIC; 3D 1H REMARK 210 -13C NOESY ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-15N HSQC; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLU A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 50 -49.99 82.25 REMARK 500 1 VAL A 92 54.19 -116.01 REMARK 500 1 ASP A 106 -43.53 172.95 REMARK 500 1 ASP A 123 -53.62 179.72 REMARK 500 2 HIS A 50 -49.99 82.66 REMARK 500 2 VAL A 92 53.98 -115.17 REMARK 500 2 CYS A 105 -69.16 71.92 REMARK 500 2 ASP A 123 -55.34 179.71 REMARK 500 3 HIS A 50 -50.26 80.94 REMARK 500 3 VAL A 73 -171.32 -61.55 REMARK 500 3 VAL A 92 53.39 -115.00 REMARK 500 3 ASP A 106 -38.51 171.25 REMARK 500 3 ASP A 123 -56.00 179.87 REMARK 500 4 HIS A 50 -49.78 77.54 REMARK 500 4 VAL A 73 -176.96 -59.88 REMARK 500 4 VAL A 92 53.32 -115.80 REMARK 500 4 ASP A 106 -43.84 173.70 REMARK 500 4 ASP A 123 -51.26 -179.67 REMARK 500 5 HIS A 50 -50.46 77.66 REMARK 500 5 VAL A 73 -173.33 -68.11 REMARK 500 5 VAL A 92 50.23 -118.48 REMARK 500 5 ASP A 106 -44.31 175.06 REMARK 500 5 ASP A 123 -55.63 179.93 REMARK 500 6 HIS A 50 -50.80 78.41 REMARK 500 6 VAL A 73 -177.97 -59.70 REMARK 500 6 VAL A 92 54.08 -115.85 REMARK 500 6 ASP A 106 -45.59 174.52 REMARK 500 6 ASP A 123 -53.54 179.77 REMARK 500 7 HIS A 50 -49.96 77.85 REMARK 500 7 VAL A 73 -171.91 -59.75 REMARK 500 7 VAL A 92 53.62 -115.49 REMARK 500 7 ASP A 123 -51.52 -180.00 REMARK 500 8 HIS A 50 -49.56 83.55 REMARK 500 8 VAL A 92 54.36 -115.49 REMARK 500 8 ASP A 106 -39.99 171.45 REMARK 500 8 ASP A 123 -51.57 -179.51 REMARK 500 9 HIS A 50 -50.25 82.13 REMARK 500 9 VAL A 73 -171.64 -59.81 REMARK 500 9 VAL A 92 53.46 -115.40 REMARK 500 9 ASP A 106 -46.01 173.93 REMARK 500 9 ASP A 123 -51.91 -179.74 REMARK 500 10 HIS A 50 -49.43 77.51 REMARK 500 10 VAL A 92 53.33 -116.44 REMARK 500 10 ASP A 106 -38.81 172.33 REMARK 500 10 ASP A 123 -51.22 -179.72 REMARK 500 11 HIS A 50 -49.89 81.27 REMARK 500 11 VAL A 92 54.00 -115.71 REMARK 500 11 ASP A 106 -42.09 172.72 REMARK 500 11 ASP A 123 -55.80 179.85 REMARK 500 12 HIS A 50 -51.50 76.58 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H8Q RELATED DB: PDB REMARK 900 GLUTAREDOXIN DOMAIN OF HUMAN THIOREDOXIN REDUCTASE 3 REMARK 900 RELATED ID: 17636 RELATED DB: BMRB DBREF 2LV3 A 7 124 UNP Q99MD6 TRXR3_MOUSE 44 161 SEQRES 1 A 118 ARG ARG ALA ARG LEU ALA SER PRO GLY THR SER ARG PRO SEQRES 2 A 118 SER SER GLU ALA ARG GLU GLU LEU ARG ARG ARG LEU ARG SEQRES 3 A 118 ASP LEU ILE GLU GLY ASN ARG VAL MET ILE PHE SER LYS SEQRES 4 A 118 SER TYR CYS PRO HIS SER THR ARG VAL LYS GLU LEU PHE SEQRES 5 A 118 SER SER LEU GLY VAL VAL TYR ASN ILE LEU GLU LEU ASP SEQRES 6 A 118 GLN VAL ASP ASP GLY ALA SER VAL GLN GLU VAL LEU THR SEQRES 7 A 118 GLU ILE SER ASN GLN LYS THR VAL PRO ASN ILE PHE VAL SEQRES 8 A 118 ASN LYS VAL HIS VAL GLY GLY CYS ASP ARG THR PHE GLN SEQRES 9 A 118 ALA HIS GLN ASN GLY LEU LEU GLN LYS LEU LEU GLN ASP SEQRES 10 A 118 ASP HELIX 1 1 ALA A 23 ASN A 38 1 16 HELIX 2 2 THR A 52 LEU A 61 1 10 HELIX 3 3 ASP A 75 ASN A 88 1 14 HELIX 4 4 ASP A 106 GLY A 115 1 10 HELIX 5 5 LEU A 117 ASP A 123 1 7 SHEET 1 A 3 ASN A 66 GLU A 69 0 SHEET 2 A 3 VAL A 40 SER A 44 1 N SER A 44 O LEU A 68 SHEET 3 A 3 PHE A 96 VAL A 97 -1 O PHE A 96 N MET A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1