HEADER METAL BINDING PROTEIN 05-JUL-12 2LVH TITLE SOLUTION STRUCTURE OF THE ZINC FINGER AFV1P06 PROTEIN FROM THE TITLE 2 HYPERTHERMOPHILIC ARCHAEAL VIRUS AFV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZINC FINGER PROTEIN ORF59A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDIANUS FILAMENTOUS VIRUS 1; SOURCE 3 ORGANISM_TAXID: 654909; SOURCE 4 STRAIN: YELLOWSTONE; SOURCE 5 GENE: ORF59A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-30A KEYWDS ZINC FINGER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.GUILLIERE,G.SEZONOV,D.PRANGISHVILI,M.DELEPIERRE,J.GUIJARRO REVDAT 2 14-JUN-23 2LVH 1 REMARK LINK REVDAT 1 30-JAN-13 2LVH 0 JRNL AUTH F.GUILLIERE,C.DANIOUX,C.JAUBERT,N.DESNOUES,M.DELEPIERRE, JRNL AUTH 2 D.PRANGISHVILI,G.SEZONOV,J.I.GUIJARRO JRNL TITL SOLUTION STRUCTURE OF AN ARCHAEAL DNA BINDING PROTEIN WITH JRNL TITL 2 AN EUKARYOTIC ZINC FINGER FOLD. JRNL REF PLOS ONE V. 8 52908 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23326363 JRNL DOI 10.1371/JOURNAL.PONE.0052908 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 2.3A, CNS 1.2 REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102882. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1 MM [U-98% 13C; U-98% 15N] REMARK 210 AFV1P06, 88% H2O/12% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D (HB)CB(CGCD)HD REMARK 210 AROMATIC; 2D (HB)CB(CGCDCE)HE REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.3, ARIA 2.2, REMARK 210 CNS 1.2, TALOS, PROCHECK 3.5.4, REMARK 210 WHATCHECK, MOLMOL 2K.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 LEU A 52 REMARK 465 LYS A 53 REMARK 465 ASP A 54 REMARK 465 VAL A 55 REMARK 465 ASN A 56 REMARK 465 LYS A 57 REMARK 465 ILE A 58 REMARK 465 ILE A 59 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-10 REMARK 470 RES CSSEQI ATOMS REMARK 470 SER A 51 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 SER A 47 -174.03 -174.87 REMARK 500 7 ARG A 15 -60.87 -100.91 REMARK 500 8 ARG A 15 -60.85 -99.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 105.8 REMARK 620 3 HIS A 29 NE2 106.7 110.9 REMARK 620 4 GLU A 34 OE2 86.0 118.9 122.6 REMARK 620 5 GLU A 34 OE1 143.4 100.1 87.2 58.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18570 RELATED DB: BMRB DBREF 2LVH A 1 59 UNP Q70LE5 Y059A_AFV1Y 1 59 SEQRES 1 A 59 MET ILE GLU VAL SER SER MET GLU ARG VAL TYR GLN CYS SEQRES 2 A 59 LEU ARG CYS GLY LEU THR PHE ARG THR LYS LYS GLN LEU SEQRES 3 A 59 ILE ARG HIS LEU VAL ASN THR GLU LYS VAL ASN PRO LEU SEQRES 4 A 59 SER ILE ASP TYR TYR TYR GLN SER PHE SER VAL SER LEU SEQRES 5 A 59 LYS ASP VAL ASN LYS ILE ILE HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 THR A 22 THR A 33 1 12 HELIX 2 2 SER A 40 TYR A 43 5 4 SHEET 1 A 3 THR A 19 PHE A 20 0 SHEET 2 A 3 GLU A 8 CYS A 13 -1 N TYR A 11 O PHE A 20 SHEET 3 A 3 TYR A 45 VAL A 50 -1 O VAL A 50 N GLU A 8 LINK SG CYS A 13 ZN ZN A 101 1555 1555 2.31 LINK SG CYS A 16 ZN ZN A 101 1555 1555 2.31 LINK NE2 HIS A 29 ZN ZN A 101 1555 1555 2.00 LINK OE2 GLU A 34 ZN ZN A 101 1555 1555 1.93 LINK OE1 GLU A 34 ZN ZN A 101 1555 1555 2.39 SITE 1 AC1 4 CYS A 13 CYS A 16 HIS A 29 GLU A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1