HEADER PROTEIN TRANSPORT 29-AUG-12 2LXL TITLE LIP5(MIT)2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-183; COMPND 5 SYNONYM: DOPAMINE-RESPONSIVE GENE 1 PROTEIN, DRG-1, LYST-INTERACTING COMPND 6 PROTEIN 5, LIP5, SKD1-BINDING PROTEIN 1, SBP1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VTA1, C6ORF55, HSPC228, MY012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS MIT, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.J.SKALICKY,W.I.SUNDQUIST REVDAT 3 14-JUN-23 2LXL 1 REMARK REVDAT 2 16-JAN-13 2LXL 1 JRNL REVDAT 1 28-NOV-12 2LXL 0 JRNL AUTH J.J.SKALICKY,J.ARII,D.M.WENZEL,W.M.STUBBLEFIELD,A.KATSUYAMA, JRNL AUTH 2 N.T.UTER,M.BAJOREK,D.G.MYSZKA,W.I.SUNDQUIST JRNL TITL INTERACTIONS OF THE HUMAN LIP5 REGULATORY PROTEIN WITH JRNL TITL 2 ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT. JRNL REF J.BIOL.CHEM. V. 287 43910 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23105106 JRNL DOI 10.1074/JBC.M112.417899 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 113, XPLOR-NIH REMARK 3 AUTHORS : VARIAN (VNMRJ), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102958. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.075 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 LIP5(1-183), 25 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.5 MM DTT, 0.1 MM EDTA, 92% REMARK 210 H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ALA A 164 REMARK 465 GLY A 165 REMARK 465 PRO A 166 REMARK 465 VAL A 167 REMARK 465 GLY A 168 REMARK 465 ILE A 169 REMARK 465 GLU A 170 REMARK 465 GLU A 171 REMARK 465 ASP A 172 REMARK 465 ASN A 173 REMARK 465 ASP A 174 REMARK 465 ILE A 175 REMARK 465 GLU A 176 REMARK 465 GLU A 177 REMARK 465 ASN A 178 REMARK 465 GLU A 179 REMARK 465 ASP A 180 REMARK 465 ALA A 181 REMARK 465 GLY A 182 REMARK 465 ALA A 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 53 H ARG A 57 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 173.35 -56.80 REMARK 500 1 SER A 51 -91.32 -48.89 REMARK 500 2 ILE A 49 -70.00 -75.60 REMARK 500 2 SER A 51 -83.51 -54.15 REMARK 500 2 PRO A 54 -35.87 -38.13 REMARK 500 3 ASP A 50 -94.63 -126.37 REMARK 500 3 SER A 51 -79.96 159.46 REMARK 500 4 PRO A 8 165.38 -49.25 REMARK 500 5 PRO A 8 172.50 -55.07 REMARK 500 5 PHE A 14 42.19 -105.91 REMARK 500 5 SER A 51 -94.61 -58.52 REMARK 500 5 PRO A 54 -31.02 -39.80 REMARK 500 6 ASP A 50 -122.76 -121.70 REMARK 500 6 SER A 51 -101.07 -176.78 REMARK 500 7 SER A 51 -81.00 -47.85 REMARK 500 8 ILE A 49 -70.30 -72.60 REMARK 500 8 SER A 51 -108.18 -56.05 REMARK 500 9 SER A 51 -98.18 -49.34 REMARK 500 10 ILE A 49 -87.73 -41.49 REMARK 500 10 ASP A 50 -115.48 -100.63 REMARK 500 10 SER A 51 -117.38 -155.67 REMARK 500 10 PRO A 54 -30.19 -34.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18681 RELATED DB: BMRB REMARK 900 RELATED ID: 2LXM RELATED DB: PDB DBREF 2LXL A 1 183 UNP Q9NP79 VTA1_HUMAN 1 183 SEQRES 1 A 183 MET ALA ALA LEU ALA PRO LEU PRO PRO LEU PRO ALA GLN SEQRES 2 A 183 PHE LYS SER ILE GLN HIS HIS LEU ARG THR ALA GLN GLU SEQRES 3 A 183 HIS ASP LYS ARG ASP PRO VAL VAL ALA TYR TYR CYS ARG SEQRES 4 A 183 LEU TYR ALA MET GLN THR GLY MET LYS ILE ASP SER LYS SEQRES 5 A 183 THR PRO GLU CYS ARG LYS PHE LEU SER LYS LEU MET ASP SEQRES 6 A 183 GLN LEU GLU ALA LEU LYS LYS GLN LEU GLY ASP ASN GLU SEQRES 7 A 183 ALA ILE THR GLN GLU ILE VAL GLY CYS ALA HIS LEU GLU SEQRES 8 A 183 ASN TYR ALA LEU LYS MET PHE LEU TYR ALA ASP ASN GLU SEQRES 9 A 183 ASP ARG ALA GLY ARG PHE HIS LYS ASN MET ILE LYS SER SEQRES 10 A 183 PHE TYR THR ALA SER LEU LEU ILE ASP VAL ILE THR VAL SEQRES 11 A 183 PHE GLY GLU LEU THR ASP GLU ASN VAL LYS HIS ARG LYS SEQRES 12 A 183 TYR ALA ARG TRP LYS ALA THR TYR ILE HIS ASN CYS LEU SEQRES 13 A 183 LYS ASN GLY GLU THR PRO GLN ALA GLY PRO VAL GLY ILE SEQRES 14 A 183 GLU GLU ASP ASN ASP ILE GLU GLU ASN GLU ASP ALA GLY SEQRES 15 A 183 ALA HELIX 1 1 PRO A 11 LYS A 15 5 5 HELIX 2 2 ILE A 17 ASP A 31 1 15 HELIX 3 3 ASP A 31 ASP A 50 1 20 HELIX 4 4 GLU A 55 GLY A 75 1 21 HELIX 5 5 ASN A 77 GLN A 82 1 6 HELIX 6 6 GLN A 82 ALA A 107 1 26 HELIX 7 7 HIS A 111 VAL A 130 1 20 HELIX 8 8 THR A 135 ASN A 158 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1