HEADER SIGNALING PROTEIN/NEUROPEPTIDE 20-SEP-12 2LYW TITLE INTERMOLECULAR INTERACTIONS BETWEEN NEUROTENSIN AND THE THIRD TITLE 2 EXTRACELLULAR LOOP OF HUMAN NEUROTENSIN 1 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROTENSIN RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN RESIDUES 321-344; COMPND 5 SYNONYM: NT-R-1, NTR1, HIGH-AFFINITY LEVOCABASTINE-INSENSITIVE COMPND 6 NEUROTENSIN RECEPTOR, NTRH; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NEUROTENSIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: NT; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS INTERACTION LIGAND/RECEPTOR, NTS1, SIGNALING PROTEIN-NEUROPEPTIDE KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.MONTI,G.DA COSTA REVDAT 5 14-JUN-23 2LYW 1 REMARK REVDAT 4 25-DEC-19 2LYW 1 REMARK SEQADV SEQRES LINK REVDAT 3 13-NOV-13 2LYW 1 JRNL REVDAT 2 24-JUL-13 2LYW 1 JRNL REVDAT 1 12-DEC-12 2LYW 0 JRNL AUTH G.DA COSTA,A.BONDON,J.COUTANT,P.CURMI,J.P.MONTI JRNL TITL INTERMOLECULAR INTERACTIONS BETWEEN THE NEUROTENSIN AND THE JRNL TITL 2 THIRD EXTRACELLULAR LOOP OF HUMAN NEUROTENSIN 1 RECEPTOR. JRNL REF J.BIOMOL.STRUCT.DYN. V. 31 1381 2013 JRNL REFN ISSN 0739-1102 JRNL PMID 23140271 JRNL DOI 10.1080/07391102.2012.736776 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT II, INSIGHT II REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (INSIGHT II), ACCELRYS REMARK 3 SOFTWARE INC. (INSIGHT II) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000103001. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM NEUROTENSIN, 1.4 MM REMARK 210 HNTS1(321-344), TRIFLUOROETHANOL/ REMARK 210 WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 HIS A 23 CG HIS A 23 CD2 0.055 REMARK 500 8 HIS A 23 CG HIS A 23 CD2 0.056 REMARK 500 10 HIS A 23 CG HIS A 23 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 HIS A 23 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 1 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 HIS A 23 ND1 - CE1 - NE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 3 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 5 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 HIS A 23 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 5 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 5 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 6 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 8 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 8 HIS A 23 ND1 - CE1 - NE2 ANGL. DEV. = 8.1 DEGREES REMARK 500 8 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 8 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 2 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 10 HIS A 23 ND1 - CE1 - NE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 10 ARG B 8 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 10 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 6 -63.33 -154.96 REMARK 500 1 GLU A 12 -93.11 -76.40 REMARK 500 1 ASP A 20 -95.80 -101.17 REMARK 500 2 ILE A 9 96.75 -63.30 REMARK 500 3 PHE A 6 -80.01 -139.10 REMARK 500 3 SER A 7 47.23 -91.04 REMARK 500 3 PHE A 17 -53.36 -5.88 REMARK 500 3 TYR A 19 -85.01 -140.25 REMARK 500 4 HIS A 23 -67.00 -126.32 REMARK 500 4 PRO B 10 45.34 -73.13 REMARK 500 5 MET A 5 79.16 -100.30 REMARK 500 5 SER A 7 -81.30 -141.17 REMARK 500 5 THR A 15 78.42 -111.79 REMARK 500 5 TYR A 19 58.31 -98.66 REMARK 500 6 ASP A 20 -83.33 -104.82 REMARK 500 6 TYR A 22 93.45 -67.72 REMARK 500 7 ASP A 11 -68.83 -133.13 REMARK 500 7 GLN A 13 -60.03 -96.13 REMARK 500 7 HIS A 23 -63.84 -122.34 REMARK 500 8 PHE A 17 -2.40 -46.90 REMARK 500 8 ASP A 20 -83.79 -94.79 REMARK 500 9 SER A 7 -80.43 -134.44 REMARK 500 9 PHE A 21 -57.70 -120.13 REMARK 500 9 HIS A 23 -64.40 -95.05 REMARK 500 10 PHE A 6 -75.26 -97.85 REMARK 500 10 PRO A 16 103.47 -57.07 REMARK 500 10 ILE B 12 72.41 -119.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 2 0.09 SIDE CHAIN REMARK 500 2 ARG B 9 0.08 SIDE CHAIN REMARK 500 8 ARG A 2 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 21029 RELATED DB: BMRB DBREF 2LYW A 1 24 UNP P30989 NTR1_HUMAN 321 344 DBREF 2LYW B 1 13 UNP P30990 NEUT_HUMAN 151 163 SEQADV 2LYW SER A 7 UNP P30989 CYS 327 ENGINEERED MUTATION SEQRES 1 A 24 VAL ARG ARG LEU MET PHE SER TYR ILE SER ASP GLU GLN SEQRES 2 A 24 TRP THR PRO PHE LEU TYR ASP PHE TYR HIS TYR SEQRES 1 B 13 PCA LEU TYR GLU ASN LYS PRO ARG ARG PRO TYR ILE LEU MODRES 2LYW PCA B 1 GLN PYROGLUTAMIC ACID HET PCA B 1 14 HETNAM PCA PYROGLUTAMIC ACID FORMUL 2 PCA C5 H7 N O3 LINK C PCA B 1 N LEU B 2 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1