HEADER TRANSCRIPTION 22-OCT-12 2M09 TITLE STRUCTURE, PHOSPHORYLATION AND U2AF65 BINDING OF THE NTERMINAL DOMAIN TITLE 2 OF SPLICING FACTOR 1 DURING 3 SPLICE SITE RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPLICING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-145; COMPND 5 SYNONYM: MAMMALIAN BRANCH POINT-BINDING PROTEIN, BBP, MBBP, COMPND 6 TRANSCRIPTION FACTOR ZFM1, ZINC FINGER GENE IN MEN1 LOCUS, ZINC COMPND 7 FINGER PROTEIN 162; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF1, ZFM1, ZNF162; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS SPLICEOSOME ASSEMBLY, SF1, UHM, ULM, RRM, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.MADL,M.SATTLER,Y.ZHANG,I.BAGDIUL,T.KERN,H.KANG,P.ZOU,N.MAEUSBACHER, AUTHOR 2 S.A.SIEBER,A.KRAEMER REVDAT 2 14-JUN-23 2M09 1 REMARK SEQADV REVDAT 1 30-JAN-13 2M09 0 JRNL AUTH Y.ZHANG,T.MADL,I.BAGDIUL,T.KERN,H.S.KANG,P.ZOU,N.MAUSBACHER, JRNL AUTH 2 S.A.SIEBER,A.KRAMER,M.SATTLER JRNL TITL STRUCTURE, PHOSPHORYLATION AND U2AF65 BINDING OF THE JRNL TITL 2 N-TERMINAL DOMAIN OF SPLICING FACTOR 1 DURING 3'-SPLICE SITE JRNL TITL 3 RECOGNITION. JRNL REF NUCLEIC ACIDS RES. V. 41 1343 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23175611 JRNL DOI 10.1093/NAR/GKS1097 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.1, ARIA 2.1, CYANA 3.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103045. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100-600 UM [U-15N] PROTEIN, 100 REMARK 210 -600 UM [U-13C; U-15N] ENTITY, REMARK 210 100-600 UM [U-13C; U-15N; U-2H] REMARK 210 ENTITY, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, NMRPIPE, SPARKY, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 78 HH12 ARG A 97 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 26 160.52 73.64 REMARK 500 1 PRO A 85 137.50 -37.13 REMARK 500 1 SER A 137 22.35 -159.37 REMARK 500 2 THR A 96 -78.91 -91.57 REMARK 500 2 LYS A 139 80.59 66.26 REMARK 500 3 ALA A 26 -160.39 -106.01 REMARK 500 3 LEU A 94 -93.22 -135.72 REMARK 500 3 VAL A 136 -70.76 71.92 REMARK 500 3 SER A 137 69.72 32.36 REMARK 500 4 LEU A 94 -152.81 -135.26 REMARK 500 4 THR A 96 -75.28 -94.51 REMARK 500 4 ALA A 133 28.05 -162.46 REMARK 500 5 PRO A 76 -33.81 -27.80 REMARK 500 5 THR A 96 -76.81 -105.00 REMARK 500 5 LYS A 139 -29.59 178.38 REMARK 500 6 ALA A 26 -35.12 74.36 REMARK 500 6 THR A 96 -77.25 -99.98 REMARK 500 7 ALA A 26 -42.37 74.23 REMARK 500 7 GLU A 28 -81.69 -86.93 REMARK 500 7 GLN A 29 -171.27 61.24 REMARK 500 7 LEU A 94 -93.77 -128.33 REMARK 500 7 THR A 96 -68.43 -90.33 REMARK 500 7 ARG A 135 -161.06 -113.27 REMARK 500 8 LEU A 94 -157.91 -129.05 REMARK 500 8 ARG A 135 125.15 72.43 REMARK 500 8 SER A 137 80.53 60.70 REMARK 500 9 MET A 27 -61.47 73.36 REMARK 500 9 LEU A 94 -159.21 -102.47 REMARK 500 9 LYS A 139 -172.27 65.41 REMARK 500 10 ARG A 79 -70.64 62.52 REMARK 500 10 PRO A 81 152.30 -49.52 REMARK 500 10 LEU A 94 -165.82 -104.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 79 0.07 SIDE CHAIN REMARK 500 3 ARG A 50 0.08 SIDE CHAIN REMARK 500 4 ARG A 102 0.10 SIDE CHAIN REMARK 500 6 ARG A 93 0.08 SIDE CHAIN REMARK 500 9 ARG A 46 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18802 RELATED DB: BMRB DBREF 2M09 A 27 145 UNP Q15637 SF01_HUMAN 27 145 SEQADV 2M09 GLY A 25 UNP Q15637 EXPRESSION TAG SEQADV 2M09 ALA A 26 UNP Q15637 EXPRESSION TAG SEQRES 1 A 121 GLY ALA MET GLU GLN LYS THR VAL ILE PRO GLY MET PRO SEQRES 2 A 121 THR VAL ILE PRO PRO GLY LEU THR ARG GLU GLN GLU ARG SEQRES 3 A 121 ALA TYR ILE VAL GLN LEU GLN ILE GLU ASP LEU THR ARG SEQRES 4 A 121 LYS LEU ARG THR GLY ASP LEU GLY ILE PRO PRO ASN PRO SEQRES 5 A 121 GLU ASP ARG SER PRO SER PRO GLU PRO ILE TYR ASN SER SEQRES 6 A 121 GLU GLY LYS ARG LEU ASN THR ARG GLU PHE ARG THR ARG SEQRES 7 A 121 LYS LYS LEU GLU GLU GLU ARG HIS ASN LEU ILE THR GLU SEQRES 8 A 121 MET VAL ALA LEU ASN PRO ASP PHE LYS PRO PRO ALA ASP SEQRES 9 A 121 TYR LYS PRO PRO ALA THR ARG VAL SER ASP LYS VAL MET SEQRES 10 A 121 ILE PRO GLN ASP HELIX 1 1 THR A 45 GLY A 68 1 24 HELIX 2 2 ASN A 75 SER A 80 5 6 HELIX 3 3 THR A 96 ASN A 120 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1