HEADER SPLICING 25-OCT-12 2M0G TITLE STRUCTURE, PHOSPHORYLATION AND U2AF65 BINDING OF THE NTERMINAL DOMAIN TITLE 2 OF SPLICING FACTOR 1 DURING 3 SPLICE SITE RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPLICING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-145; COMPND 5 SYNONYM: MAMMALIAN BRANCH POINT-BINDING PROTEIN, BBP, MBBP, COMPND 6 TRANSCRIPTION FACTOR ZFM1, ZINC FINGER GENE IN MEN1 LOCUS, ZINC COMPND 7 FINGER PROTEIN 162; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SPLICING FACTOR U2AF 65 KDA SUBUNIT; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: RRM 3 DOMAIN RESIDUES 372-475; COMPND 14 SYNONYM: U2 AUXILIARY FACTOR 65 KDA SUBUNIT, HU2AF(65), HU2AF65, U2 COMPND 15 SNRNP AUXILIARY FACTOR LARGE SUBUNIT; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF1, ZFM1, ZNF162; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM11; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: U2AF2, U2AF65; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS SPLICEOSOME ASSEMBLY, SF1, UHM, ULM, SPLICING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.MADL,M.SATTLER,Y.ZHANG,I.BAGDIUL,T.KERN,H.KANG,P.ZOU,N.MAEUSBACHER, AUTHOR 2 S.A.SIEBER,A.KRAEMER REVDAT 2 01-MAY-24 2M0G 1 REMARK SEQADV REVDAT 1 30-JAN-13 2M0G 0 JRNL AUTH Y.ZHANG,T.MADL,I.BAGDIUL,T.KERN,H.S.KANG,P.ZOU,N.MAUSBACHER, JRNL AUTH 2 S.A.SIEBER,A.KRAMER,M.SATTLER JRNL TITL STRUCTURE, PHOSPHORYLATION AND U2AF65 BINDING OF THE JRNL TITL 2 N-TERMINAL DOMAIN OF SPLICING FACTOR 1 DURING 3'-SPLICE SITE JRNL TITL 3 RECOGNITION. JRNL REF NUCLEIC ACIDS RES. V. 41 1343 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23175611 JRNL DOI 10.1093/NAR/GKS1097 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.1, ARIA 2.1, CYANA 3.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103052. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100-600 UM [U-15N] PROTEIN, 100 REMARK 210 -600 UM [U-13C; U-15N] ENTITY, REMARK 210 100-600 UM [U-13C; U-15N; U-2H] REMARK 210 ENTITY, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, NMRPIPE, SPARKY, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 -90.18 -125.58 REMARK 500 1 ALA A 7 -176.21 64.56 REMARK 500 1 ASP A 11 108.10 -160.44 REMARK 500 1 SER A 14 -166.73 -102.04 REMARK 500 1 LYS A 18 -54.23 -163.89 REMARK 500 1 TRP A 22 53.02 -141.97 REMARK 500 1 ASN A 23 -156.57 -80.23 REMARK 500 1 GLN A 24 -37.72 -169.27 REMARK 500 1 MET A 27 -24.08 74.35 REMARK 500 1 THR A 31 -27.63 -157.61 REMARK 500 1 ARG A 79 -157.28 -81.43 REMARK 500 1 THR A 96 -50.15 -163.01 REMARK 500 1 ALA A 133 113.32 70.07 REMARK 500 1 ARG A 135 160.20 70.44 REMARK 500 1 CYS A 137 -173.08 65.52 REMARK 500 1 LYS A 139 -163.04 63.53 REMARK 500 1 THR B 375 -71.38 -117.77 REMARK 500 1 GLU B 376 -45.91 -176.82 REMARK 500 1 MET B 383 14.39 -164.92 REMARK 500 1 LEU B 389 34.91 -82.98 REMARK 500 1 SER B 407 30.38 -90.12 REMARK 500 1 PRO B 427 77.08 -66.29 REMARK 500 1 ARG B 452 -152.23 -76.41 REMARK 500 1 LYS B 453 117.12 -160.79 REMARK 500 1 ALA B 455 -50.87 -161.23 REMARK 500 1 ASN B 456 24.93 -157.29 REMARK 500 2 LEU A 10 -98.82 60.00 REMARK 500 2 ASP A 11 -158.47 -128.02 REMARK 500 2 SER A 14 -166.71 -102.04 REMARK 500 2 LYS A 18 -54.26 -163.86 REMARK 500 2 TRP A 22 53.11 -141.98 REMARK 500 2 ASN A 23 -156.52 -80.25 REMARK 500 2 GLN A 24 -37.60 -169.37 REMARK 500 2 THR A 26 -93.38 174.70 REMARK 500 2 GLU A 28 93.04 64.82 REMARK 500 2 GLN A 29 -69.51 -133.66 REMARK 500 2 ASN A 75 71.38 58.65 REMARK 500 2 ASP A 78 -44.03 -160.11 REMARK 500 2 TYR A 87 92.73 69.12 REMARK 500 2 LEU A 94 -15.14 74.94 REMARK 500 2 THR A 96 -50.23 -122.42 REMARK 500 2 ALA A 133 -44.22 -138.84 REMARK 500 2 ARG A 135 95.88 61.21 REMARK 500 2 THR B 375 -71.32 -129.01 REMARK 500 2 GLU B 376 -45.92 -176.88 REMARK 500 2 MET B 383 14.43 -164.87 REMARK 500 2 LEU B 389 34.90 -82.96 REMARK 500 2 SER B 407 30.33 -90.11 REMARK 500 2 PRO B 427 77.11 -66.32 REMARK 500 2 ARG B 452 -152.20 -77.98 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18808 RELATED DB: BMRB DBREF 2M0G A 1 145 UNP Q15637 SF01_HUMAN 1 145 DBREF 2M0G B 372 475 UNP P26368 U2AF2_HUMAN 372 475 SEQADV 2M0G CYS A 137 UNP Q15637 SER 137 ENGINEERED MUTATION SEQRES 1 A 145 MET ALA THR GLY ALA ASN ALA THR PRO LEU ASP PHE PRO SEQRES 2 A 145 SER LYS LYS ARG LYS ARG SER ARG TRP ASN GLN ASP THR SEQRES 3 A 145 MET GLU GLN LYS THR VAL ILE PRO GLY MET PRO THR VAL SEQRES 4 A 145 ILE PRO PRO GLY LEU THR ARG GLU GLN GLU ARG ALA TYR SEQRES 5 A 145 ILE VAL GLN LEU GLN ILE GLU ASP LEU THR ARG LYS LEU SEQRES 6 A 145 ARG THR GLY ASP LEU GLY ILE PRO PRO ASN PRO GLU ASP SEQRES 7 A 145 ARG SER PRO SER PRO GLU PRO ILE TYR ASN SER GLU GLY SEQRES 8 A 145 LYS ARG LEU ASN THR ARG GLU PHE ARG THR ARG LYS LYS SEQRES 9 A 145 LEU GLU GLU GLU ARG HIS ASN LEU ILE THR GLU MET VAL SEQRES 10 A 145 ALA LEU ASN PRO ASP PHE LYS PRO PRO ALA ASP TYR LYS SEQRES 11 A 145 PRO PRO ALA THR ARG VAL CYS ASP LYS VAL MET ILE PRO SEQRES 12 A 145 GLN ASP SEQRES 1 B 104 GLY HIS PRO THR GLU VAL LEU CYS LEU MET ASN MET VAL SEQRES 2 B 104 LEU PRO GLU GLU LEU LEU ASP ASP GLU GLU TYR GLU GLU SEQRES 3 B 104 ILE VAL GLU ASP VAL ARG ASP GLU CYS SER LYS TYR GLY SEQRES 4 B 104 LEU VAL LYS SER ILE GLU ILE PRO ARG PRO VAL ASP GLY SEQRES 5 B 104 VAL GLU VAL PRO GLY CYS GLY LYS ILE PHE VAL GLU PHE SEQRES 6 B 104 THR SER VAL PHE ASP CYS GLN LYS ALA MET GLN GLY LEU SEQRES 7 B 104 THR GLY ARG LYS PHE ALA ASN ARG VAL VAL VAL THR LYS SEQRES 8 B 104 TYR CYS ASP PRO ASP SER TYR HIS ARG ARG ASP PHE TRP HELIX 1 1 THR A 45 GLY A 68 1 24 HELIX 2 2 THR A 96 ASN A 120 1 25 HELIX 3 3 ASP B 391 SER B 407 1 17 HELIX 4 4 SER B 438 THR B 450 1 13 HELIX 5 5 ASP B 465 ARG B 471 1 7 SHEET 1 A 4 VAL B 412 GLU B 416 0 SHEET 2 A 4 LYS B 431 PHE B 436 -1 O GLU B 435 N SER B 414 SHEET 3 A 4 VAL B 377 MET B 381 -1 N LEU B 380 O ILE B 432 SHEET 4 A 4 VAL B 460 CYS B 464 -1 O LYS B 462 N CYS B 379 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1