HEADER PEPTIDE BINDING PROTEIN 30-OCT-12 2M0O TITLE THE SOLUTION STRUCTURE OF HUMAN PHF1 IN COMPLEX WITH H3K36ME3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN PHF1, POLYCOMB-LIKE PROTEIN 1, HPCL1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: H3K36ME3 PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF1, PCL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS TUDOR DOMAIN, H3K36ME3 BINDING, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SONG,D.J.PATEL REVDAT 2 27-FEB-13 2M0O 1 JRNL REVDAT 1 16-JAN-13 2M0O 0 JRNL AUTH L.CAI,S.B.ROTHBART,R.LU,B.XU,W.Y.CHEN,A.TRIPATHY, JRNL AUTH 2 S.ROCKOWITZ,D.ZHENG,D.J.PATEL,C.D.ALLIS,B.D.STRAHL,J.SONG, JRNL AUTH 3 G.G.WANG JRNL TITL AN H3K36 METHYLATION-ENGAGING TUDOR MOTIF OF POLYCOMB-LIKE JRNL TITL 2 PROTEINS MEDIATES PRC2 COMPLEX TARGETING. JRNL REF MOL.CELL V. 49 571 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 23273982 JRNL DOI 10.1016/J.MOLCEL.2012.11.026 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB103060. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.5 MM [U-100% 13C; U-100% REMARK 210 15N] PHF1 TUDOR, 0.6-1.0 MM REMARK 210 H3K36ME3 PEPTIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 2D 1H-15N REMARK 210 HSQC; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D CBCA(CO)NH; 3D HCCH-TOCSY; 2D REMARK 210 1H-1H NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 LEU A 83 O REMARK 470 TYR B 341 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 61 HE1 TRP A 75 1.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 120.97 63.34 REMARK 500 1 SER A 14 101.09 55.17 REMARK 500 1 ASP A 67 34.72 -87.54 REMARK 500 1 ALA A 82 -45.26 -141.24 REMARK 500 1 VAL B 335 -125.12 -93.69 REMARK 500 1 PRO B 338 -148.66 -67.39 REMARK 500 1 ARG B 340 -36.11 -154.32 REMARK 500 2 ARG A 6 108.50 58.97 REMARK 500 2 ALA A 12 121.24 62.74 REMARK 500 2 SER A 14 -42.66 -139.03 REMARK 500 2 ALA A 22 98.36 54.64 REMARK 500 2 PRO A 27 -81.93 -76.28 REMARK 500 2 ARG A 28 -52.11 -162.76 REMARK 500 2 ARG A 30 -35.23 -134.52 REMARK 500 2 ASP A 67 34.17 -87.62 REMARK 500 2 ALA A 82 -42.55 -131.75 REMARK 500 2 M3L B 336 169.09 53.74 REMARK 500 2 PRO B 338 -164.23 -78.83 REMARK 500 2 ARG B 340 -54.48 -146.08 REMARK 500 3 LEU A 7 -43.93 -134.58 REMARK 500 3 LEU A 15 -53.56 70.08 REMARK 500 3 THR A 24 -43.92 -147.92 REMARK 500 3 PRO A 27 32.97 -80.50 REMARK 500 3 ASP A 67 36.69 -91.29 REMARK 500 3 ALA A 82 -58.92 68.19 REMARK 500 3 THR B 332 118.62 61.62 REMARK 500 3 VAL B 335 -179.27 46.91 REMARK 500 3 ARG B 340 58.99 -96.49 REMARK 500 4 LEU A 7 -58.97 69.62 REMARK 500 4 SER A 8 109.14 56.15 REMARK 500 4 SER A 13 -40.13 -137.10 REMARK 500 4 LEU A 15 -15.72 71.24 REMARK 500 4 ARG A 30 -37.45 -144.77 REMARK 500 4 ASP A 67 33.16 -88.45 REMARK 500 4 THR B 332 119.46 62.02 REMARK 500 4 PRO B 338 -154.49 -63.53 REMARK 500 4 ARG B 340 -41.05 -147.25 REMARK 500 5 LEU A 7 -43.79 -131.03 REMARK 500 5 SER A 14 123.84 62.42 REMARK 500 5 SER A 20 158.04 63.43 REMARK 500 5 ARG A 30 -37.93 -164.27 REMARK 500 5 ASP A 67 34.88 -90.28 REMARK 500 5 PRO B 338 -158.43 -76.06 REMARK 500 5 ARG B 340 59.96 -96.84 REMARK 500 6 SER A 13 -50.79 -125.43 REMARK 500 6 SER A 14 177.66 57.28 REMARK 500 6 ASP A 67 33.82 -91.13 REMARK 500 7 ARG A 28 80.29 56.02 REMARK 500 7 ARG A 30 -29.40 69.81 REMARK 500 7 ASP A 67 35.68 -90.61 REMARK 500 REMARK 500 THIS ENTRY HAS 156 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18813 RELATED DB: BMRB DBREF 2M0O A 6 83 UNP O43189 PHF1_HUMAN 6 83 DBREF 2M0O B 331 341 PDB 2M0O 2M0O 331 341 SEQADV 2M0O SER A 5 UNP O43189 EXPRESSION TAG SEQRES 1 A 79 SER ARG LEU SER ARG SER GLY ALA SER SER LEU TRP ASP SEQRES 2 A 79 PRO ALA SER PRO ALA PRO THR SER GLY PRO ARG PRO ARG SEQRES 3 A 79 LEU TRP GLU GLY GLN ASP VAL LEU ALA ARG TRP THR ASP SEQRES 4 A 79 GLY LEU LEU TYR LEU GLY THR ILE LYS LYS VAL ASP SER SEQRES 5 A 79 ALA ARG GLU VAL CYS LEU VAL GLN PHE GLU ASP ASP SER SEQRES 6 A 79 GLN PHE LEU VAL LEU TRP LYS ASP ILE SER PRO ALA ALA SEQRES 7 A 79 LEU SEQRES 1 B 11 ALA THR GLY GLY VAL M3L LYS PRO HIS ARG TYR MODRES 2M0O M3L B 336 LYS N-TRIMETHYLLYSINE HET M3L B 336 31 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ SHEET 1 A 4 ASP A 36 LEU A 38 0 SHEET 2 A 4 LEU A 48 ASP A 55 -1 O GLY A 49 N VAL A 37 SHEET 3 A 4 VAL A 60 PHE A 65 -1 O GLN A 64 N THR A 50 SHEET 4 A 4 GLN A 70 LEU A 74 -1 O VAL A 73 N CYS A 61 LINK C VAL B 335 N M3L B 336 1555 1555 1.35 LINK C M3L B 336 N LYS B 337 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1