data_2M19 # _entry.id 2M19 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M19 pdb_00002m19 10.2210/pdb2m19/pdb RCSB RCSB103081 ? ? BMRB 18850 ? ? WWPDB D_1000103081 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 4HRO PDB . unspecified 4HRS PDB . unspecified 18850 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M19 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-21 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, Y.' 1 'Maciejewski, M.W.' 2 'Martin, J.' 3 'Jin, K.' 4 'Zhang, Y.' 5 'Lu, M.' 6 'Maupin-Furlow, J.A.' 7 'Hao, B.' 8 # _citation.id primary _citation.title 'Crystal structure of the ubiquitin-like small archaeal modifier protein 2 from Haloferax volcanii.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 22 _citation.page_first 1206 _citation.page_last 1217 _citation.year 2013 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23821306 _citation.pdbx_database_id_DOI 10.1002/pro.2305 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Y.' 1 ? primary 'Maciejewski, M.W.' 2 ? primary 'Martin, J.' 3 ? primary 'Jin, K.' 4 ? primary 'Zhang, Y.' 5 ? primary 'Maupin-Furlow, J.A.' 6 ? primary 'Hao, B.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Molybdopterin converting factor subunit 1' _entity.formula_weight 11540.722 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGGRDYKDDDDKGTMELELRFFATFREVVGQKSIYWRVDDDATVGDVLRSLEAEYDGLAGRLIEDGEVKPHVNVLKNGRE VVHLDGMATALDDGDAVSVFPPVAGG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGRDYKDDDDKGTMELELRFFATFREVVGQKSIYWRVDDDATVGDVLRSLEAEYDGLAGRLIEDGEVKPHVNVLKNGRE VVHLDGMATALDDGDAVSVFPPVAGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLY n 1 4 ARG n 1 5 ASP n 1 6 TYR n 1 7 LYS n 1 8 ASP n 1 9 ASP n 1 10 ASP n 1 11 ASP n 1 12 LYS n 1 13 GLY n 1 14 THR n 1 15 MET n 1 16 GLU n 1 17 LEU n 1 18 GLU n 1 19 LEU n 1 20 ARG n 1 21 PHE n 1 22 PHE n 1 23 ALA n 1 24 THR n 1 25 PHE n 1 26 ARG n 1 27 GLU n 1 28 VAL n 1 29 VAL n 1 30 GLY n 1 31 GLN n 1 32 LYS n 1 33 SER n 1 34 ILE n 1 35 TYR n 1 36 TRP n 1 37 ARG n 1 38 VAL n 1 39 ASP n 1 40 ASP n 1 41 ASP n 1 42 ALA n 1 43 THR n 1 44 VAL n 1 45 GLY n 1 46 ASP n 1 47 VAL n 1 48 LEU n 1 49 ARG n 1 50 SER n 1 51 LEU n 1 52 GLU n 1 53 ALA n 1 54 GLU n 1 55 TYR n 1 56 ASP n 1 57 GLY n 1 58 LEU n 1 59 ALA n 1 60 GLY n 1 61 ARG n 1 62 LEU n 1 63 ILE n 1 64 GLU n 1 65 ASP n 1 66 GLY n 1 67 GLU n 1 68 VAL n 1 69 LYS n 1 70 PRO n 1 71 HIS n 1 72 VAL n 1 73 ASN n 1 74 VAL n 1 75 LEU n 1 76 LYS n 1 77 ASN n 1 78 GLY n 1 79 ARG n 1 80 GLU n 1 81 VAL n 1 82 VAL n 1 83 HIS n 1 84 LEU n 1 85 ASP n 1 86 GLY n 1 87 MET n 1 88 ALA n 1 89 THR n 1 90 ALA n 1 91 LEU n 1 92 ASP n 1 93 ASP n 1 94 GLY n 1 95 ASP n 1 96 ALA n 1 97 VAL n 1 98 SER n 1 99 VAL n 1 100 PHE n 1 101 PRO n 1 102 PRO n 1 103 VAL n 1 104 ALA n 1 105 GLY n 1 106 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene HVO_2177 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DS2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haloferax volcanii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 309800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant DE3 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET15b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D4GVB0_HALVD _struct_ref.pdbx_db_accession D4GVB0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MELELRFFATFREVVGQKSIYWRVDDDATVGDVLRSLEAEYDGLAGRLIEDGEVKPHVNVLKNGREVVHLDGMATALDDG DAVSVFPPVAGG ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M19 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 106 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D4GVB0 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 92 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2M19 GLY A 1 ? UNP D4GVB0 ? ? 'expression tag' -13 1 1 2M19 GLY A 2 ? UNP D4GVB0 ? ? 'expression tag' -12 2 1 2M19 GLY A 3 ? UNP D4GVB0 ? ? 'expression tag' -11 3 1 2M19 ARG A 4 ? UNP D4GVB0 ? ? 'expression tag' -10 4 1 2M19 ASP A 5 ? UNP D4GVB0 ? ? 'expression tag' -9 5 1 2M19 TYR A 6 ? UNP D4GVB0 ? ? 'expression tag' -8 6 1 2M19 LYS A 7 ? UNP D4GVB0 ? ? 'expression tag' -7 7 1 2M19 ASP A 8 ? UNP D4GVB0 ? ? 'expression tag' -6 8 1 2M19 ASP A 9 ? UNP D4GVB0 ? ? 'expression tag' -5 9 1 2M19 ASP A 10 ? UNP D4GVB0 ? ? 'expression tag' -4 10 1 2M19 ASP A 11 ? UNP D4GVB0 ? ? 'expression tag' -3 11 1 2M19 LYS A 12 ? UNP D4GVB0 ? ? 'expression tag' -2 12 1 2M19 GLY A 13 ? UNP D4GVB0 ? ? 'expression tag' -1 13 1 2M19 THR A 14 ? UNP D4GVB0 ? ? 'expression tag' 0 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 1 '3D HNCACB' 1 4 1 '3D HNCO' 1 5 1 '3D HCACO' 1 6 1 '3D HBHA(CO)NH' 1 7 1 '3D C(CO)NH' 1 8 1 '3D H(CCO)NH' 1 9 2 '3D HCCH-TOCSY' 1 10 2 '2D 1H-13C HSQC aromatic' 1 11 2 '2D 1H-1H NOESY' 1 12 1 '3D 1H-15N NOESY' 1 13 2 '3D 1H-13C NOESY aliphatic' 1 14 2 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.5 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-99% 13C; U-99% 15N] Ubl protein HVO 2177, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-99% 13C; U-99% 15N] Ubl protein HVO 2177, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian VNMRS 1 'Varian VNMRS' 800 Varian VNMRS 2 'Varian VNMRS' # _pdbx_nmr_refine.entry_id 2M19 _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M19 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M19 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bartels et al.' 'chemical shift assignment' XEASY 1.2 1 'Bartels et al.' 'peak picking' XEASY 1.2 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 3 Varian collection VnmrJ 3.1 4 'Hoch, Jeffrey C. & Stern, Alan S.' processing Rowland_NMR_Toolkit 3.0 5 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.3 6 'Cornilescu, Delaglio and Bax' 'torsion angle restraints' TALOS+ ? 7 'Shen, Delaglio, Cornilescu, and Bax' 'torsion angle restraints' TALOS+ ? 8 'Guntert, Mumenthaler and Wuthrich' refinement CYANA ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M19 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M19 _struct.title 'Solution structure of the Haloferax volcanii HVO 2177 protein' _struct.pdbx_model_details 'closest to the average, model 7' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M19 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'ubiquitin-like protein, PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 23 ? GLY A 30 ? ALA A 9 GLY A 16 1 ? 8 HELX_P HELX_P2 2 THR A 43 ? TYR A 55 ? THR A 29 TYR A 41 1 ? 13 HELX_P HELX_P3 3 ASP A 56 ? ALA A 59 ? ASP A 42 ALA A 45 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 33 ? ASP A 39 ? SER A 19 ASP A 25 A 2 THR A 14 ? PHE A 21 ? THR A 0 PHE A 7 A 3 ALA A 96 ? PHE A 100 ? ALA A 82 PHE A 86 A 4 ASN A 73 ? LYS A 76 ? ASN A 59 LYS A 62 A 5 ARG A 79 ? GLU A 80 ? ARG A 65 GLU A 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 36 ? O TRP A 22 N LEU A 17 ? N LEU A 3 A 2 3 N ARG A 20 ? N ARG A 6 O VAL A 99 ? O VAL A 85 A 3 4 O SER A 98 ? O SER A 84 N LEU A 75 ? N LEU A 61 A 4 5 N LYS A 76 ? N LYS A 62 O ARG A 79 ? O ARG A 65 # _atom_sites.entry_id 2M19 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -13 -13 GLY GLY A . n A 1 2 GLY 2 -12 -12 GLY GLY A . n A 1 3 GLY 3 -11 -11 GLY GLY A . n A 1 4 ARG 4 -10 -10 ARG ARG A . n A 1 5 ASP 5 -9 -9 ASP ASP A . n A 1 6 TYR 6 -8 -8 TYR TYR A . n A 1 7 LYS 7 -7 -7 LYS LYS A . n A 1 8 ASP 8 -6 -6 ASP ASP A . n A 1 9 ASP 9 -5 -5 ASP ASP A . n A 1 10 ASP 10 -4 -4 ASP ASP A . n A 1 11 ASP 11 -3 -3 ASP ASP A . n A 1 12 LYS 12 -2 -2 LYS LYS A . n A 1 13 GLY 13 -1 -1 GLY GLY A . n A 1 14 THR 14 0 0 THR THR A . n A 1 15 MET 15 1 1 MET MET A . n A 1 16 GLU 16 2 2 GLU GLU A . n A 1 17 LEU 17 3 3 LEU LEU A . n A 1 18 GLU 18 4 4 GLU GLU A . n A 1 19 LEU 19 5 5 LEU LEU A . n A 1 20 ARG 20 6 6 ARG ARG A . n A 1 21 PHE 21 7 7 PHE PHE A . n A 1 22 PHE 22 8 8 PHE PHE A . n A 1 23 ALA 23 9 9 ALA ALA A . n A 1 24 THR 24 10 10 THR THR A . n A 1 25 PHE 25 11 11 PHE PHE A . n A 1 26 ARG 26 12 12 ARG ARG A . n A 1 27 GLU 27 13 13 GLU GLU A . n A 1 28 VAL 28 14 14 VAL VAL A . n A 1 29 VAL 29 15 15 VAL VAL A . n A 1 30 GLY 30 16 16 GLY GLY A . n A 1 31 GLN 31 17 17 GLN GLN A . n A 1 32 LYS 32 18 18 LYS LYS A . n A 1 33 SER 33 19 19 SER SER A . n A 1 34 ILE 34 20 20 ILE ILE A . n A 1 35 TYR 35 21 21 TYR TYR A . n A 1 36 TRP 36 22 22 TRP TRP A . n A 1 37 ARG 37 23 23 ARG ARG A . n A 1 38 VAL 38 24 24 VAL VAL A . n A 1 39 ASP 39 25 25 ASP ASP A . n A 1 40 ASP 40 26 26 ASP ASP A . n A 1 41 ASP 41 27 27 ASP ASP A . n A 1 42 ALA 42 28 28 ALA ALA A . n A 1 43 THR 43 29 29 THR THR A . n A 1 44 VAL 44 30 30 VAL VAL A . n A 1 45 GLY 45 31 31 GLY GLY A . n A 1 46 ASP 46 32 32 ASP ASP A . n A 1 47 VAL 47 33 33 VAL VAL A . n A 1 48 LEU 48 34 34 LEU LEU A . n A 1 49 ARG 49 35 35 ARG ARG A . n A 1 50 SER 50 36 36 SER SER A . n A 1 51 LEU 51 37 37 LEU LEU A . n A 1 52 GLU 52 38 38 GLU GLU A . n A 1 53 ALA 53 39 39 ALA ALA A . n A 1 54 GLU 54 40 40 GLU GLU A . n A 1 55 TYR 55 41 41 TYR TYR A . n A 1 56 ASP 56 42 42 ASP ASP A . n A 1 57 GLY 57 43 43 GLY GLY A . n A 1 58 LEU 58 44 44 LEU LEU A . n A 1 59 ALA 59 45 45 ALA ALA A . n A 1 60 GLY 60 46 46 GLY GLY A . n A 1 61 ARG 61 47 47 ARG ARG A . n A 1 62 LEU 62 48 48 LEU LEU A . n A 1 63 ILE 63 49 49 ILE ILE A . n A 1 64 GLU 64 50 50 GLU GLU A . n A 1 65 ASP 65 51 51 ASP ASP A . n A 1 66 GLY 66 52 52 GLY GLY A . n A 1 67 GLU 67 53 53 GLU GLU A . n A 1 68 VAL 68 54 54 VAL VAL A . n A 1 69 LYS 69 55 55 LYS LYS A . n A 1 70 PRO 70 56 56 PRO PRO A . n A 1 71 HIS 71 57 57 HIS HIS A . n A 1 72 VAL 72 58 58 VAL VAL A . n A 1 73 ASN 73 59 59 ASN ASN A . n A 1 74 VAL 74 60 60 VAL VAL A . n A 1 75 LEU 75 61 61 LEU LEU A . n A 1 76 LYS 76 62 62 LYS LYS A . n A 1 77 ASN 77 63 63 ASN ASN A . n A 1 78 GLY 78 64 64 GLY GLY A . n A 1 79 ARG 79 65 65 ARG ARG A . n A 1 80 GLU 80 66 66 GLU GLU A . n A 1 81 VAL 81 67 67 VAL VAL A . n A 1 82 VAL 82 68 68 VAL VAL A . n A 1 83 HIS 83 69 69 HIS HIS A . n A 1 84 LEU 84 70 70 LEU LEU A . n A 1 85 ASP 85 71 71 ASP ASP A . n A 1 86 GLY 86 72 72 GLY GLY A . n A 1 87 MET 87 73 73 MET MET A . n A 1 88 ALA 88 74 74 ALA ALA A . n A 1 89 THR 89 75 75 THR THR A . n A 1 90 ALA 90 76 76 ALA ALA A . n A 1 91 LEU 91 77 77 LEU LEU A . n A 1 92 ASP 92 78 78 ASP ASP A . n A 1 93 ASP 93 79 79 ASP ASP A . n A 1 94 GLY 94 80 80 GLY GLY A . n A 1 95 ASP 95 81 81 ASP ASP A . n A 1 96 ALA 96 82 82 ALA ALA A . n A 1 97 VAL 97 83 83 VAL VAL A . n A 1 98 SER 98 84 84 SER SER A . n A 1 99 VAL 99 85 85 VAL VAL A . n A 1 100 PHE 100 86 86 PHE PHE A . n A 1 101 PRO 101 87 87 PRO PRO A . n A 1 102 PRO 102 88 88 PRO PRO A . n A 1 103 VAL 103 89 89 VAL VAL A . n A 1 104 ALA 104 90 90 ALA ALA A . n A 1 105 GLY 105 91 91 GLY GLY A . n A 1 106 GLY 106 92 92 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-07 2 'Structure model' 1 1 2013-08-21 3 'Structure model' 1 2 2013-10-02 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Ubl protein HVO_2177-1' 1 ? mM '[U-99% 13C; U-99% 15N]' 1 'Ubl protein HVO_2177-2' 1 ? mM '[U-99% 13C; U-99% 15N]' 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M19 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 3421 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 549 _pdbx_nmr_constraints.NOE_long_range_total_count 1424 _pdbx_nmr_constraints.NOE_medium_range_total_count 640 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 808 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 82 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 82 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A -10 ? ? 57.46 87.51 2 1 ASP A -5 ? ? 72.68 150.69 3 1 ASP A -4 ? ? 66.37 -178.86 4 1 LYS A -2 ? ? -167.46 -35.95 5 1 ALA A 9 ? ? 61.55 -131.24 6 1 LYS A 55 ? ? 151.10 139.20 7 1 HIS A 57 ? ? 73.48 -14.20 8 1 LYS A 62 ? ? -165.14 106.13 9 1 LEU A 70 ? ? -133.50 -150.34 10 1 THR A 75 ? ? -81.72 -75.43 11 1 ALA A 76 ? ? -177.45 34.85 12 2 ARG A -10 ? ? -87.29 -86.41 13 2 TYR A -8 ? ? 57.74 -81.43 14 2 ASP A -3 ? ? 60.61 100.52 15 2 ALA A 9 ? ? 58.30 -130.69 16 2 LYS A 55 ? ? 150.84 132.71 17 2 HIS A 57 ? ? 82.95 -17.42 18 2 LEU A 70 ? ? -131.96 -152.90 19 2 ALA A 76 ? ? -177.05 33.43 20 3 ARG A -10 ? ? -110.79 54.52 21 3 TYR A -8 ? ? 65.20 -76.58 22 3 ASP A -4 ? ? -162.08 -53.04 23 3 ALA A 9 ? ? 59.21 -127.44 24 3 LYS A 55 ? ? 150.59 135.92 25 3 LEU A 70 ? ? -131.00 -153.09 26 3 ALA A 76 ? ? 174.18 33.48 27 4 ASP A -5 ? ? -158.25 -155.85 28 4 ASP A -4 ? ? 70.69 168.90 29 4 LYS A -2 ? ? -176.91 -54.02 30 4 ALA A 9 ? ? 61.85 -128.90 31 4 LYS A 55 ? ? 155.17 133.14 32 4 HIS A 57 ? ? 77.85 -15.11 33 4 LEU A 70 ? ? -143.66 -155.67 34 4 THR A 75 ? ? -79.67 -79.37 35 4 ALA A 76 ? ? -169.96 33.11 36 5 ARG A -10 ? ? 61.09 77.15 37 5 TYR A -8 ? ? -87.43 41.63 38 5 LYS A -2 ? ? -153.22 -42.31 39 5 ALA A 9 ? ? 60.46 -132.72 40 5 LYS A 55 ? ? 150.54 132.27 41 5 HIS A 57 ? ? 78.93 -12.18 42 5 LEU A 70 ? ? -138.15 -151.27 43 5 ALA A 76 ? ? 179.84 33.77 44 6 ALA A 9 ? ? 58.44 -133.60 45 6 LYS A 55 ? ? 150.44 137.00 46 6 HIS A 57 ? ? 81.19 -9.29 47 6 LEU A 70 ? ? -139.58 -153.04 48 6 ALA A 76 ? ? -179.00 34.65 49 7 ASP A -4 ? ? 66.91 149.28 50 7 ALA A 9 ? ? 61.02 -130.75 51 7 LYS A 55 ? ? 153.22 139.69 52 7 HIS A 57 ? ? 77.83 -1.69 53 7 LEU A 70 ? ? -135.39 -140.70 54 7 ALA A 76 ? ? -174.99 33.70 55 8 ASP A -6 ? ? 57.16 -167.72 56 8 ALA A 9 ? ? 58.44 -121.03 57 8 LYS A 55 ? ? 150.39 137.84 58 8 HIS A 57 ? ? 82.25 -23.78 59 8 LEU A 70 ? ? -132.84 -154.01 60 8 THR A 75 ? ? -70.09 -70.19 61 8 ALA A 76 ? ? -178.99 35.27 62 9 ARG A -10 ? ? 39.78 65.55 63 9 LYS A -7 ? ? -132.35 -50.39 64 9 ASP A -6 ? ? 69.27 -177.20 65 9 ASP A -5 ? ? 74.12 -73.30 66 9 ASP A -3 ? ? 70.59 142.84 67 9 ALA A 9 ? ? 59.08 -120.90 68 9 LYS A 55 ? ? 151.61 139.61 69 9 LEU A 70 ? ? -156.47 -153.84 70 9 THR A 75 ? ? -81.64 -71.61 71 9 ALA A 76 ? ? -175.16 34.67 72 9 VAL A 89 ? ? -87.31 37.73 73 9 ALA A 90 ? ? -68.99 89.93 74 10 ARG A -10 ? ? 59.61 -171.65 75 10 LYS A -2 ? ? -167.33 -41.25 76 10 ALA A 9 ? ? 58.45 -129.92 77 10 LYS A 55 ? ? 151.18 136.32 78 10 HIS A 57 ? ? 82.42 -14.82 79 10 LEU A 70 ? ? -131.81 -139.81 80 10 ALA A 74 ? ? -154.26 77.57 81 10 ALA A 76 ? ? -178.27 33.13 82 11 ASP A -6 ? ? 77.72 179.14 83 11 ASP A -4 ? ? -84.05 -151.27 84 11 LYS A -2 ? ? -153.24 -56.67 85 11 ALA A 9 ? ? 57.36 -128.12 86 11 LYS A 55 ? ? 152.49 135.92 87 11 HIS A 57 ? ? 76.73 -2.93 88 11 LEU A 70 ? ? -130.30 -152.22 89 11 ALA A 76 ? ? 176.06 33.72 90 12 ASP A -4 ? ? 178.78 -62.27 91 12 ALA A 9 ? ? 56.28 -128.03 92 12 LYS A 55 ? ? 153.60 137.17 93 12 HIS A 57 ? ? 76.35 -6.73 94 12 LEU A 70 ? ? -124.62 -153.14 95 12 ASP A 71 ? ? -59.64 109.34 96 12 ALA A 74 ? ? -161.44 79.21 97 12 THR A 75 ? ? -76.58 -74.97 98 12 ALA A 76 ? ? -176.68 35.31 99 13 TYR A -8 ? ? 70.66 -66.81 100 13 ASP A -5 ? ? -161.09 -62.88 101 13 LYS A -2 ? ? -153.16 -60.20 102 13 ALA A 9 ? ? 60.80 -122.60 103 13 LYS A 55 ? ? 150.02 132.44 104 13 HIS A 57 ? ? 80.16 -21.33 105 13 LEU A 70 ? ? -138.24 -152.72 106 13 ALA A 74 ? ? -153.78 85.34 107 13 THR A 75 ? ? -82.01 -70.79 108 13 ALA A 76 ? ? 179.77 34.68 109 14 LYS A -7 ? ? 64.06 69.53 110 14 ALA A 9 ? ? 57.95 -119.00 111 14 LYS A 55 ? ? 149.45 137.23 112 14 HIS A 57 ? ? 76.35 -6.26 113 14 LEU A 70 ? ? -130.22 -150.47 114 14 ASP A 71 ? ? -58.21 107.89 115 14 ALA A 74 ? ? -155.36 81.48 116 14 ALA A 76 ? ? -173.50 33.71 117 14 ALA A 90 ? ? -161.60 -48.22 118 15 TYR A -8 ? ? 62.73 175.23 119 15 LYS A -7 ? ? 43.50 -156.24 120 15 ASP A -5 ? ? 74.02 152.50 121 15 ASP A -3 ? ? 68.08 148.63 122 15 ALA A 9 ? ? 59.72 -125.28 123 15 LYS A 55 ? ? 154.88 135.11 124 15 HIS A 57 ? ? 79.45 -12.49 125 15 LYS A 62 ? ? -162.51 105.58 126 15 LEU A 70 ? ? -144.84 -152.40 127 15 ALA A 74 ? ? -153.19 77.65 128 15 THR A 75 ? ? -82.15 -74.62 129 15 ALA A 76 ? ? -171.22 33.91 130 16 ASP A -9 ? ? -144.56 -137.99 131 16 TYR A -8 ? ? 71.51 -61.68 132 16 ASP A -6 ? ? -78.20 -78.88 133 16 ASP A -5 ? ? 60.03 -176.75 134 16 LYS A -2 ? ? -144.97 -62.64 135 16 ALA A 9 ? ? 60.75 -126.75 136 16 LYS A 55 ? ? 151.50 137.48 137 16 HIS A 57 ? ? 79.38 -11.72 138 16 LEU A 70 ? ? -147.01 -149.35 139 16 ALA A 76 ? ? 175.57 33.99 140 17 ASP A -6 ? ? -174.87 -75.06 141 17 ASP A -5 ? ? 58.29 -171.50 142 17 ALA A 9 ? ? 59.21 -120.60 143 17 LYS A 55 ? ? 150.81 135.97 144 17 HIS A 57 ? ? 77.90 -11.94 145 17 LEU A 70 ? ? -134.75 -153.14 146 17 THR A 75 ? ? -81.29 -71.40 147 17 ALA A 76 ? ? -173.75 28.08 148 17 ALA A 90 ? ? -59.24 106.17 149 18 TYR A -8 ? ? 68.13 -6.02 150 18 ALA A 9 ? ? 60.06 -117.77 151 18 LYS A 55 ? ? 149.58 134.27 152 18 HIS A 57 ? ? 81.03 -26.99 153 18 LYS A 62 ? ? -162.28 105.43 154 18 LEU A 70 ? ? -116.79 -150.74 155 18 ALA A 74 ? ? -151.73 83.96 156 18 THR A 75 ? ? -81.47 -75.26 157 18 ALA A 76 ? ? -169.40 33.76 158 19 ASP A -5 ? ? 72.64 -93.86 159 19 ASP A -4 ? ? -172.03 95.29 160 19 ASP A -3 ? ? -176.99 135.60 161 19 ALA A 9 ? ? 59.66 -122.29 162 19 LYS A 55 ? ? 150.21 138.09 163 19 HIS A 57 ? ? 74.86 -4.79 164 19 LYS A 62 ? ? -163.77 106.00 165 19 LEU A 70 ? ? -130.34 -148.34 166 19 ALA A 74 ? ? -166.99 85.35 167 19 THR A 75 ? ? -81.81 -73.15 168 19 ALA A 76 ? ? -173.19 33.51 169 19 ALA A 90 ? ? -177.00 129.35 170 20 LYS A -7 ? ? -128.60 -69.36 171 20 ASP A -6 ? ? 173.39 -57.29 172 20 ASP A -4 ? ? 69.92 80.33 173 20 ASP A -3 ? ? 67.35 138.19 174 20 ALA A 9 ? ? 59.41 -133.27 175 20 LYS A 55 ? ? 153.74 135.22 176 20 HIS A 57 ? ? 76.28 -15.29 177 20 LEU A 70 ? ? -117.60 -153.74 178 20 THR A 75 ? ? -81.34 -72.87 179 20 ALA A 76 ? ? 174.55 34.84 #