data_2M23 # _entry.id 2M23 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M23 pdb_00002m23 10.2210/pdb2m23/pdb RCSB RCSB103111 ? ? BMRB 18893 ? ? WWPDB D_1000103111 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-04-16 _pdbx_database_PDB_obs_spr.pdb_id 2M23 _pdbx_database_PDB_obs_spr.replace_pdb_id 2K64 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2K63 PDB . unspecified 2K64 PDB . unspecified 2K65 PDB . unspecified 2K66 PDB . unspecified 2M1V PDB . unspecified 2M24 PDB . unspecified 18893 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M23 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-12-12 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kruschel, D.' 1 'Skilandat, M.' 2 'Sigel, R.K.O.' 3 # _citation.id primary _citation.title ;NMR structure of the 5' splice site in the group IIB intron Sc.ai5 gamma--conformational requirements for exon-intron recognition. ; _citation.journal_abbrev Rna _citation.journal_volume 20 _citation.page_first 295 _citation.page_last 307 _citation.year 2014 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24448450 _citation.pdbx_database_id_DOI 10.1261/rna.041137.113 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kruschel, D.' 1 ? primary 'Skilandat, M.' 2 ? primary 'Sigel, R.K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (29-MER)' 9301.547 1 ? 'A15C, A17C' "d3'EBS1" 'sequence produced by in-vitro transcription from a synthetic dsDNA template using T7 RNA-polymerase' 2 polymer syn "RNA_(5'-R(*CP*AP*GP*UP*GP*UP*C)-3')_" 2197.355 1 ? 'U61G, U63G' IBS1 ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAGUAUGUAUUGGCACUGAGCAUACUCC GGAGUAUGUAUUGGCACUGAGCAUACUCC A ? 2 polyribonucleotide no no CAGUGUC CAGUGUC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 U n 1 6 A n 1 7 U n 1 8 G n 1 9 U n 1 10 A n 1 11 U n 1 12 U n 1 13 G n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 U n 1 19 G n 1 20 A n 1 21 G n 1 22 C n 1 23 A n 1 24 U n 1 25 A n 1 26 C n 1 27 U n 1 28 C n 1 29 C n 2 1 C n 2 2 A n 2 3 G n 2 4 U n 2 5 G n 2 6 U n 2 7 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 4932 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2M23 2M23 1 ? GGAGUAUGUAUUGGCACUGAGCAUACUCC ? 2 PDB 2M23 2M23 2 ? CAGUGUC ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M23 A 1 ? 29 ? 2M23 1 ? 29 ? 1 29 2 2 2M23 B 1 ? 7 ? 2M23 59 ? 65 ? 59 65 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' 1 4 5 '2D 1H-1H NOESY' 1 5 4 '2D 1H-13C HSQC aliphatic' 1 6 6 '2D 1H-13C HSQC aliphatic' 2 7 4 '2D 1H-15N HSQC' 1 8 4 '2D 1H-13C HSQC aromatic' 1 9 6 '2D 1H-13C HSQC aromatic' 1 10 3 '2D 1H-13C HSQC aliphatic' 1 11 3 '2D 1H-13C HSQC aromatic' 2 12 2 '2D 1H-1H NOESY' 2 13 2 '2D 1H-1H NOESY' 3 14 2 '2D 1H-1H NOESY' 2 15 4 '2D JNN HNN COSY' 1 16 1 1D-31P 1 17 4 'F1,2 X-filtered 1H-1H NOESY' 1 18 4 'F1,2 X-filtered 1H-1H TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 110 6.8 ambient ? 298 K 2 110 6.8 ambient ? 278 K 3 110 6.8 ambient ? 293 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.5-0.9 mM RNA (29-MER), 0.5-0.9 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 100% D2O ; 1 '100% D2O' ;0.5-0.9 mM RNA (29-MER), 0.5-0.9 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.5 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 0.5 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 100% D2O ; 3 '100% D2O' ;0.5 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 0.5 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 90% H2O/10% D2O ; 4 '90% H2O/10% D2O' ;0.6 mM [3',4',5',5'',5-100% 2H] RNA (29-MER), 0.6 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 100% D2O ; 5 '100% D2O' ;0.5 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 0.5 mM RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3'), 110 mM potassium chloride, 10 uM EDTA, 25.6 mg/mL Pf1 phage, 90% H2O/10% D2O ; 6 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 700 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 500 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2M23 _pdbx_nmr_refine.method 'molecular dynamics, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M23 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 5 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M23 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' Sparky 3.1 1 Goddard 'data analysis' Sparky 3.1 2 Goddard 'peak picking' Sparky 3.1 3 'Bruker Biospin' collection TopSpin '1.3, 2.0, 2.1' 4 'Bruker Biospin' processing TopSpin '1.3, 2.0, 2.1' 5 'Guntert, Braun and Wuthrich' 'data analysis' DYANA 1.5 6 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNSSOLVE 1.2 7 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' 2.24 8 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.24 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M23 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M23 _struct.title ;NMR solution structure of the d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1 ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M23 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;group II intron, ribozyme, hairpin, EBS1, IBS1, splicing, 5'-splice site, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 1 A C 28 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 1 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 2 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 2 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 2 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 3 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 3 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 4 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 5 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 5 A A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 6 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 6 A U 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 7 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 7 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 8 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 8 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 8 A C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 21 O6 ? ? A U 9 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 21 N1 ? ? A U 9 A G 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A A 10 N6 ? ? ? 1_555 A A 20 N1 ? ? A A 10 A A 20 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 20 N1 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 20 N6 ? ? A U 11 A A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 12 B A 60 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog28 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 13 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 13 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 13 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 N1 ? ? ? 1_555 B U 6 O2 ? ? A G 14 B U 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 B U 6 N3 ? ? A G 14 B U 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog33 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 7 O2 ? ? A G 14 B C 65 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 15 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 15 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 15 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A A 16 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 16 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 16 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 16 B U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 17 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 17 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 17 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 17 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 18 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 18 B A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 18 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 18 B A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 19 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 19 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 19 B C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2M23 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 A 23 23 23 A A A . n A 1 24 U 24 24 24 U U A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 U 27 27 27 U U A . n A 1 28 C 28 28 28 C C A . n A 1 29 C 29 29 29 C C A . n B 2 1 C 1 59 59 C C B . n B 2 2 A 2 60 60 A A B . n B 2 3 G 3 61 61 G G B . n B 2 4 U 4 62 62 U U B . n B 2 5 G 5 63 63 G G B . n B 2 6 U 6 64 64 U U B . n B 2 7 C 7 65 65 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 894 ? 1 MORE -2.8 ? 1 'SSA (A^2)' 6209 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-18 2 'Structure model' 1 1 2014-02-26 3 'Structure model' 1 2 2014-03-12 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (29-MER)-1' ? 0.5-0.9 mM ? 1 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-2 ; ? 0.5-0.9 mM ? 1 'potassium chloride-3' 110 ? mM ? 1 EDTA-4 10 ? uM ? 1 'RNA (29-MER)-5' ? 0.5-0.9 mM ? 2 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-6 ; ? 0.5-0.9 mM ? 2 'potassium chloride-7' 110 ? mM ? 2 EDTA-8 10 ? uM ? 2 'RNA (29-MER)-9' 0.5 ? mM '[U-100% 13C; U-100% 15N]' 3 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-10 ; 0.5 ? mM ? 3 'potassium chloride-11' 110 ? mM ? 3 EDTA-12 10 ? uM ? 3 'RNA (29-MER)-13' 0.5 ? mM '[U-100% 13C; U-100% 15N]' 4 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-14 ; 0.5 ? mM ? 4 'potassium chloride-15' 110 ? mM ? 4 EDTA-16 10 ? uM ? 4 'RNA (29-MER)-17' 0.6 ? mM ;[3',4',5',5'',5-100% 2H] ; 5 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-18 ; 0.6 ? mM ? 5 'potassium chloride-19' 110 ? mM ? 5 EDTA-20 10 ? uM ? 5 'RNA (29-MER)-21' 0.5 ? mM '[U-100% 13C; U-100% 15N]' 6 ;RNA (5'-R(*CP*AP*GP*UP*GP*UP*C)-3')-22 ; 0.5 ? mM ? 6 'potassium chloride-23' 110 ? mM ? 6 EDTA-24 10 ? uM ? 6 'Pf1 phage-25' 25.6 ? mg/mL ? 6 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M23 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 82 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 34 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 27 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 36 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 32 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 28 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 28 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 33 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 96 _pdbx_nmr_constraints.NOE_constraints_total 747 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 250 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 348 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A U 12 ? ? "HO5'" B C 59 ? ? 1.52 2 1 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.57 3 2 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.54 4 3 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.51 5 3 O2 A U 12 ? ? "HO5'" B C 59 ? ? 1.56 6 4 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.55 7 5 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.58 8 6 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.54 9 7 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.57 10 9 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.59 11 10 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.53 12 11 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.54 13 13 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.58 14 13 "H1'" A U 12 ? ? "O5'" B C 59 ? ? 1.60 15 14 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.57 16 15 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.53 17 16 "H1'" A U 12 ? ? "O5'" B C 59 ? ? 1.56 18 16 O2 A U 12 ? ? "HO5'" B C 59 ? ? 1.56 19 16 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.60 20 17 O2 A U 12 ? ? "HO5'" B C 59 ? ? 1.49 21 17 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.56 22 17 "H1'" A U 12 ? ? "O5'" B C 59 ? ? 1.57 23 19 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.58 24 20 "H2'" A C 28 ? ? "O4'" A C 29 ? ? 1.56 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2M23 'double helix' 2M23 'a-form double helix' 2M23 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 29 1_555 -0.798 -0.443 0.171 -9.700 -9.138 -1.057 1 A_G1:C29_A A 1 ? A 29 ? 19 1 1 A G 2 1_555 A C 28 1_555 -0.812 -0.436 0.368 11.612 -5.530 -4.093 2 A_G2:C28_A A 2 ? A 28 ? 19 1 1 A A 3 1_555 A U 27 1_555 -0.691 -0.255 0.523 0.293 -6.177 -6.436 3 A_A3:U27_A A 3 ? A 27 ? 20 1 1 A G 4 1_555 A C 26 1_555 0.021 -0.160 -0.048 0.554 -8.675 -0.488 4 A_G4:C26_A A 4 ? A 26 ? 19 1 1 A U 5 1_555 A A 25 1_555 0.903 -0.194 -0.358 4.514 -6.690 5.247 5 A_U5:A25_A A 5 ? A 25 ? 20 1 1 A A 6 1_555 A U 24 1_555 -0.803 -0.325 -0.416 3.613 -14.363 10.361 6 A_A6:U24_A A 6 ? A 24 ? 20 1 1 A U 7 1_555 A A 23 1_555 -0.798 -0.168 -0.125 2.050 -7.103 -5.836 7 A_U7:A23_A A 7 ? A 23 ? 20 1 1 A G 8 1_555 A C 22 1_555 0.526 0.062 -0.117 7.161 -1.878 -4.319 8 A_G8:C22_A A 8 ? A 22 ? 19 1 1 A U 9 1_555 A G 21 1_555 1.933 -0.261 0.174 -2.938 2.429 3.718 9 A_U9:G21_A A 9 ? A 21 ? 28 1 1 A U 11 1_555 A A 20 1_555 -1.692 0.268 -0.047 15.659 -31.892 -43.927 10 A_U11:A20_A A 11 ? A 20 ? 20 1 1 B C 1 1_555 A G 19 1_555 -0.511 -0.212 -0.068 0.420 -5.553 -0.577 11 B_C59:G19_A B 59 ? A 19 ? 19 1 1 B A 2 1_555 A U 18 1_555 -0.882 -0.348 0.391 7.378 -9.139 8.537 12 B_A60:U18_A B 60 ? A 18 ? 20 1 1 B G 3 1_555 A C 17 1_555 0.514 -0.241 -0.187 -4.398 -10.763 0.663 13 B_G61:C17_A B 61 ? A 17 ? 19 1 1 B U 4 1_555 A A 16 1_555 -1.193 -0.043 -0.108 -3.105 -11.160 -11.908 14 B_U62:A16_A B 62 ? A 16 ? 20 1 1 B G 5 1_555 A C 15 1_555 0.635 -0.226 -0.240 2.179 1.891 -3.488 15 B_G63:C15_A B 63 ? A 15 ? 19 1 1 B U 6 1_555 A G 14 1_555 1.439 -0.543 -0.991 4.845 -5.544 -8.721 16 B_U64:G14_A B 64 ? A 14 ? 28 1 1 B C 7 1_555 A G 13 1_555 -0.498 -0.040 -0.354 6.083 -12.751 9.784 17 B_C65:G13_A B 65 ? A 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 29 1_555 A G 2 1_555 A C 28 1_555 -1.366 -1.235 2.160 -2.458 0.463 31.468 -2.329 2.204 2.239 0.852 4.523 31.564 1 AA_G1G2:C28C29_AA A 1 ? A 29 ? A 2 ? A 28 ? 1 A G 2 1_555 A C 28 1_555 A A 3 1_555 A U 27 1_555 -0.279 -1.637 4.019 -1.758 1.068 35.578 -2.865 0.144 3.979 1.746 2.875 35.635 2 AA_G2A3:U27C28_AA A 2 ? A 28 ? A 3 ? A 27 ? 1 A A 3 1_555 A U 27 1_555 A G 4 1_555 A C 26 1_555 0.176 -2.151 2.821 0.268 2.166 30.666 -4.413 -0.287 2.668 4.088 -0.506 30.741 3 AA_A3G4:C26U27_AA A 3 ? A 27 ? A 4 ? A 26 ? 1 A G 4 1_555 A C 26 1_555 A U 5 1_555 A A 25 1_555 -0.207 -1.441 2.783 0.751 13.706 35.977 -3.512 0.387 2.110 21.261 -1.165 38.426 4 AA_G4U5:A25C26_AA A 4 ? A 26 ? A 5 ? A 25 ? 1 A U 5 1_555 A A 25 1_555 A A 6 1_555 A U 24 1_555 0.016 -1.720 3.229 1.786 6.718 23.362 -6.003 0.475 2.632 16.139 -4.291 24.360 5 AA_U5A6:U24A25_AA A 5 ? A 25 ? A 6 ? A 24 ? 1 A A 6 1_555 A U 24 1_555 A U 7 1_555 A A 23 1_555 -1.302 -0.925 3.744 -4.979 -5.036 39.505 -0.667 1.224 3.957 -7.379 7.295 40.110 6 AA_A6U7:A23U24_AA A 6 ? A 24 ? A 7 ? A 23 ? 1 A U 7 1_555 A A 23 1_555 A G 8 1_555 A C 22 1_555 0.248 -1.666 2.933 -0.430 -0.308 34.647 -2.754 -0.476 2.944 -0.518 0.722 34.651 7 AA_U7G8:C22A23_AA A 7 ? A 23 ? A 8 ? A 22 ? 1 A G 8 1_555 A C 22 1_555 A U 9 1_555 A G 21 1_555 -0.089 -1.851 3.380 0.448 14.917 39.502 -4.020 0.167 2.548 21.175 -0.635 42.121 8 AA_G8U9:G21C22_AA A 8 ? A 22 ? A 9 ? A 21 ? 1 A U 9 1_555 A G 21 1_555 A U 11 1_555 A A 20 1_555 -3.594 -0.612 5.252 29.017 -17.049 28.204 1.225 8.320 1.336 -25.909 -44.096 43.647 9 AA_U9U11:A20G21_AA A 9 ? A 21 ? A 11 ? A 20 ? 1 A U 11 1_555 A A 20 1_555 B C 1 1_555 A G 19 1_555 1.372 -1.655 3.502 -9.598 -10.216 47.367 -1.156 -2.424 3.445 -12.403 11.651 49.283 10 AB_U11C59:G19A20_AA A 11 ? A 20 ? B 59 ? A 19 ? 1 B C 1 1_555 A G 19 1_555 B A 2 1_555 A U 18 1_555 -0.029 -1.937 2.855 -3.525 -6.807 29.786 -2.401 -0.594 3.192 -12.973 6.718 30.735 11 BB_C59A60:U18G19_AA B 59 ? A 19 ? B 60 ? A 18 ? 1 B A 2 1_555 A U 18 1_555 B G 3 1_555 A C 17 1_555 -0.623 -1.380 3.133 2.803 20.088 40.296 -3.378 1.034 2.196 27.179 -3.792 44.922 12 BB_A60G61:C17U18_AA B 60 ? A 18 ? B 61 ? A 17 ? 1 B G 3 1_555 A C 17 1_555 B U 4 1_555 A A 16 1_555 -0.969 -2.200 2.748 -0.205 9.171 26.121 -6.226 1.990 1.889 19.540 0.436 27.659 13 BB_G61U62:A16C17_AA B 61 ? A 17 ? B 62 ? A 16 ? 1 B U 4 1_555 A A 16 1_555 B G 5 1_555 A C 15 1_555 0.399 -1.130 3.037 -1.409 13.127 38.443 -2.910 -0.712 2.519 19.257 2.068 40.566 14 BB_U62G63:C15A16_AA B 62 ? A 16 ? B 63 ? A 15 ? 1 B G 5 1_555 A C 15 1_555 B U 6 1_555 A G 14 1_555 -0.783 -1.416 3.086 7.112 21.104 34.656 -3.896 1.750 1.786 31.706 -10.685 41.009 15 BB_G63U64:G14C15_AA B 63 ? A 15 ? B 64 ? A 14 ? 1 B U 6 1_555 A G 14 1_555 B C 7 1_555 A G 13 1_555 0.994 -1.250 2.770 -0.552 29.383 21.001 -4.802 -1.661 0.610 55.192 1.037 35.986 16 BB_U64C65:G13G14_AA B 64 ? A 14 ? B 65 ? A 13 ? #