HEADER PEPTIDE BINDING PROTEIN 14-JAN-13 2M38 TITLE PTB DOMAIN OF AIDA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING COMPND 3 PROTEIN 1B; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PHOSPHOTYROSINE BINDING DOMAIN; COMPND 6 SYNONYM: AMYLOID-BETA PROTEIN INTRACELLULAR DOMAIN-ASSOCIATED PROTEIN COMPND 7 1, AIDA-1, E2A-PBX1-ASSOCIATED PROTEIN, EB-1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANKS1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS405 KEYWDS PHOSPHOTYROSINE BINDING DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.DONALDSON REVDAT 3 14-JUN-23 2M38 1 REMARK SEQADV REVDAT 2 24-AUG-16 2M38 1 JRNL REVDAT 1 23-JAN-13 2M38 0 JRNL AUTH E.SMIRNOVA,R.SHANBHAG,A.KURABI,M.MOBLI,J.J.KWAN, JRNL AUTH 2 L.W.DONALDSON JRNL TITL SOLUTION STRUCTURE AND PEPTIDE BINDING OF THE PTB DOMAIN JRNL TITL 2 FROM THE AIDA1 POSTSYNAPTIC SIGNALING SCAFFOLDING PROTEIN. JRNL REF PLOS ONE V. 8 65605 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23799029 JRNL DOI 10.1371/JOURNAL.PONE.0065605 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, X-PLOR NIH 2.23 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL ENSEMBLE OF 200 STRUCTURES REMARK 3 CHOOSING BEST 20 WITH CYANA, WATER REFINEMENT OF 20 STRUCTURES REMARK 3 WITH XPLOR-NIH REMARK 4 REMARK 4 2M38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000103152. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.8 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM PTB DOMAIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC NH2 ONLY; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D HNCO; REMARK 210 3D HNCACB; 3D H(CCO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 GLN A 5 REMARK 465 ALA A 6 REMARK 465 TRP A 7 REMARK 465 GLN A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 147 REMARK 465 ALA A 148 REMARK 465 LEU A 149 REMARK 465 GLN A 150 REMARK 465 ALA A 151 REMARK 465 ARG A 152 REMARK 465 LYS A 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 53 -123.06 -129.38 REMARK 500 1 GLU A 56 -157.63 -83.05 REMARK 500 1 GLN A 57 80.23 -66.92 REMARK 500 1 LYS A 81 27.06 49.78 REMARK 500 1 ALA A 85 145.54 -174.12 REMARK 500 2 LYS A 60 137.25 178.46 REMARK 500 2 SER A 114 78.53 -103.22 REMARK 500 3 LEU A 14 -61.80 -127.02 REMARK 500 3 GLU A 33 55.60 -94.52 REMARK 500 3 ASN A 115 -38.75 75.48 REMARK 500 4 ASN A 115 -54.73 73.62 REMARK 500 5 TYR A 25 99.44 -67.34 REMARK 500 5 LEU A 34 139.21 -176.56 REMARK 500 5 CYS A 51 -81.07 -82.84 REMARK 500 5 LYS A 53 -11.87 -148.76 REMARK 500 5 THR A 55 -73.06 -155.72 REMARK 500 5 LYS A 60 26.60 -159.38 REMARK 500 6 THR A 55 -13.68 75.23 REMARK 500 6 GLU A 56 -57.73 71.07 REMARK 500 6 PRO A 62 107.40 -48.77 REMARK 500 6 ALA A 70 105.37 -53.62 REMARK 500 6 ASN A 115 -61.85 67.98 REMARK 500 7 LYS A 53 31.45 -158.25 REMARK 500 7 THR A 55 -78.71 66.91 REMARK 500 7 GLN A 57 96.00 -66.38 REMARK 500 7 VAL A 61 173.25 49.04 REMARK 500 7 ALA A 70 100.56 -56.59 REMARK 500 8 LYS A 60 94.65 62.05 REMARK 500 8 ALA A 85 166.61 175.13 REMARK 500 8 LYS A 110 70.64 -114.54 REMARK 500 8 ASN A 115 -46.26 72.94 REMARK 500 9 LYS A 53 85.61 -154.95 REMARK 500 9 THR A 55 -76.52 68.55 REMARK 500 9 MET A 58 -84.95 -76.57 REMARK 500 9 LYS A 59 -78.16 63.12 REMARK 500 9 VAL A 61 170.99 59.07 REMARK 500 9 LYS A 81 35.72 72.83 REMARK 500 10 THR A 55 -72.90 -116.62 REMARK 500 10 LYS A 59 -70.88 -69.25 REMARK 500 10 LYS A 81 33.59 70.70 REMARK 500 10 ASN A 115 -58.73 72.63 REMARK 500 11 ILE A 15 88.92 -66.03 REMARK 500 11 ALA A 16 -45.74 172.81 REMARK 500 11 THR A 55 -78.68 -99.86 REMARK 500 11 LYS A 59 -37.55 75.91 REMARK 500 11 PRO A 62 118.72 -38.39 REMARK 500 12 LYS A 32 -73.41 -113.31 REMARK 500 12 SER A 54 30.46 -93.27 REMARK 500 12 THR A 55 107.53 -56.16 REMARK 500 12 LYS A 59 -31.37 -141.36 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17934 RELATED DB: BMRB DBREF 2M38 A 1 153 UNP Q7Z6G8 ANS1B_HUMAN 1042 1194 SEQADV 2M38 ALA A 6 UNP Q7Z6G8 TYR 1047 ENGINEERED MUTATION SEQADV 2M38 ALA A 16 UNP Q7Z6G8 PHE 1057 ENGINEERED MUTATION SEQADV 2M38 ALA A 24 UNP Q7Z6G8 PHE 1065 ENGINEERED MUTATION SEQADV 2M38 ALA A 70 UNP Q7Z6G8 TYR 1111 ENGINEERED MUTATION SEQADV 2M38 ALA A 131 UNP Q7Z6G8 TYR 1172 ENGINEERED MUTATION SEQRES 1 A 153 SER THR PRO VAL GLN ALA TRP GLN HIS HIS PRO GLU LYS SEQRES 2 A 153 LEU ILE ALA GLN SER CYS ASP TYR LYS ALA ALA TYR LEU SEQRES 3 A 153 GLY SER MET LEU ILE LYS GLU LEU ARG GLY THR GLU SER SEQRES 4 A 153 THR GLN ASP ALA CYS ALA LYS MET ARG ALA ASN CYS GLN SEQRES 5 A 153 LYS SER THR GLU GLN MET LYS LYS VAL PRO THR ILE ILE SEQRES 6 A 153 LEU SER VAL SER ALA LYS GLY VAL LYS PHE ILE ASP ALA SEQRES 7 A 153 THR ASN LYS ASN ILE ILE ALA GLU HIS GLU ILE ARG ASN SEQRES 8 A 153 ILE SER CYS ALA ALA GLN ASP PRO GLU ASP LEU SER THR SEQRES 9 A 153 PHE ALA TYR ILE THR LYS ASP LEU LYS SER ASN HIS HIS SEQRES 10 A 153 TYR CYS HIS VAL PHE THR ALA PHE ASP VAL ASN LEU ALA SEQRES 11 A 153 ALA GLU ILE ILE LEU THR LEU GLY GLN ALA PHE GLU VAL SEQRES 12 A 153 ALA TYR GLN LEU ALA LEU GLN ALA ARG LYS HELIX 1 1 GLY A 36 CYS A 51 1 16 HELIX 2 2 GLU A 88 ARG A 90 5 3 HELIX 3 3 ASP A 126 GLN A 146 1 21 SHEET 1 A 7 ILE A 83 HIS A 87 0 SHEET 2 A 7 GLY A 72 ASP A 77 -1 N PHE A 75 O ALA A 85 SHEET 3 A 7 THR A 63 SER A 69 -1 N SER A 67 O LYS A 74 SHEET 4 A 7 SER A 18 ILE A 31 -1 N ALA A 23 O ILE A 64 SHEET 5 A 7 HIS A 117 ALA A 124 -1 O CYS A 119 N MET A 29 SHEET 6 A 7 THR A 104 THR A 109 -1 N PHE A 105 O PHE A 122 SHEET 7 A 7 ILE A 92 GLN A 97 -1 N ALA A 96 O ALA A 106 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1