HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 07-FEB-13 2M4L TITLE NMR STRUCTURE OF THE PROTEIN BT_0846 FROM BACTEROIDES THETAIOTAOMICRON TITLE 2 VPI-5482 (NP_809759.1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BT_0846; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_0846; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS HUMAN GUT MICROBIOME SECRETED PROTEIN, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, PSI-BIOLOGY, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 5 14-JUN-23 2M4L 1 REMARK REVDAT 4 01-FEB-23 2M4L 1 REMARK SEQADV REVDAT 3 04-MAR-15 2M4L 1 COMPND REVDAT 2 11-FEB-15 2M4L 1 TITLE REVDAT 1 27-MAR-13 2M4L 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN BT_0846 FROM BACTEROIDES JRNL TITL 2 THETAIOTAOMICRON VPI-5482 (NP_809759.1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.1, OPAL REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103201. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D-HACANH-APSY; 5D-HACACONH REMARK 210 -APSY; 5D-CBCACONH-APSY; 2D 1H- REMARK 210 15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.1, CARA, CYANA 3.0, REMARK 210 JUNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 20 TYR A 15 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 18 -66.17 -93.58 REMARK 500 1 ASN A 42 -73.07 44.95 REMARK 500 1 ALA A 43 43.71 -144.16 REMARK 500 1 GLU A 57 14.04 -165.73 REMARK 500 1 TYR A 63 1.31 -160.60 REMARK 500 1 SER A 80 -9.35 -141.44 REMARK 500 2 GLU A 2 87.12 -153.95 REMARK 500 2 ASN A 42 -75.41 44.48 REMARK 500 2 ALA A 43 47.77 -145.31 REMARK 500 2 GLU A 57 14.10 -163.72 REMARK 500 2 TYR A 63 -8.94 -151.15 REMARK 500 2 SER A 80 43.51 -149.31 REMARK 500 2 ALA A 92 105.21 -59.02 REMARK 500 3 SER A 9 40.99 -69.31 REMARK 500 3 ASN A 10 -59.61 -134.26 REMARK 500 3 ASN A 42 -81.54 45.02 REMARK 500 3 ALA A 43 43.54 -141.67 REMARK 500 3 GLU A 57 14.35 -164.41 REMARK 500 3 TYR A 63 -2.69 -156.52 REMARK 500 3 SER A 80 -66.10 -128.38 REMARK 500 3 ALA A 92 108.45 -54.96 REMARK 500 3 LYS A 97 156.03 62.43 REMARK 500 3 GLN A 98 47.20 -143.11 REMARK 500 4 ASN A 42 -78.05 53.06 REMARK 500 4 ALA A 43 21.09 -140.94 REMARK 500 4 GLU A 56 45.90 -152.66 REMARK 500 4 GLU A 57 14.49 -177.95 REMARK 500 4 TYR A 63 -2.62 -159.36 REMARK 500 4 SER A 80 -6.98 -141.68 REMARK 500 4 ALA A 92 101.61 -46.40 REMARK 500 4 LYS A 97 142.42 68.16 REMARK 500 5 GLU A 2 75.54 -69.73 REMARK 500 5 ASN A 42 -78.37 44.64 REMARK 500 5 GLU A 57 14.28 -165.76 REMARK 500 5 TYR A 63 -1.14 -154.74 REMARK 500 5 ALA A 92 108.73 -53.60 REMARK 500 5 GLN A 98 56.67 -116.50 REMARK 500 6 GLU A 2 75.46 -153.30 REMARK 500 6 ASP A 3 65.57 -117.47 REMARK 500 6 ASP A 32 32.09 -144.09 REMARK 500 6 ASN A 42 -78.47 54.13 REMARK 500 6 ALA A 43 47.97 -143.21 REMARK 500 6 GLU A 57 14.66 -164.88 REMARK 500 6 ARG A 59 -165.73 -121.37 REMARK 500 6 TYR A 63 -5.01 -158.31 REMARK 500 7 ASN A 42 -76.38 48.75 REMARK 500 7 GLU A 57 13.73 -170.43 REMARK 500 7 TYR A 63 -17.51 -160.97 REMARK 500 7 ALA A 92 105.45 -58.14 REMARK 500 7 GLN A 98 65.14 -113.76 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 2 ASP A 3 6 -149.16 REMARK 500 GLU A 21 GLY A 22 17 149.94 REMARK 500 LYS A 54 ILE A 55 18 149.60 REMARK 500 SER A 80 GLY A 81 19 -149.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 40 0.09 SIDE CHAIN REMARK 500 1 TYR A 53 0.07 SIDE CHAIN REMARK 500 1 ARG A 59 0.12 SIDE CHAIN REMARK 500 3 TYR A 53 0.08 SIDE CHAIN REMARK 500 3 TYR A 63 0.08 SIDE CHAIN REMARK 500 4 TYR A 53 0.17 SIDE CHAIN REMARK 500 4 ARG A 59 0.14 SIDE CHAIN REMARK 500 5 TYR A 66 0.07 SIDE CHAIN REMARK 500 6 ARG A 59 0.10 SIDE CHAIN REMARK 500 6 TYR A 73 0.09 SIDE CHAIN REMARK 500 7 ARG A 59 0.09 SIDE CHAIN REMARK 500 7 TYR A 66 0.07 SIDE CHAIN REMARK 500 8 TYR A 15 0.08 SIDE CHAIN REMARK 500 8 TYR A 66 0.09 SIDE CHAIN REMARK 500 9 TYR A 95 0.11 SIDE CHAIN REMARK 500 10 TYR A 63 0.08 SIDE CHAIN REMARK 500 12 TYR A 95 0.10 SIDE CHAIN REMARK 500 13 TYR A 95 0.11 SIDE CHAIN REMARK 500 14 TYR A 61 0.07 SIDE CHAIN REMARK 500 14 TYR A 95 0.07 SIDE CHAIN REMARK 500 16 TYR A 15 0.08 SIDE CHAIN REMARK 500 16 TYR A 61 0.07 SIDE CHAIN REMARK 500 17 ARG A 59 0.12 SIDE CHAIN REMARK 500 17 TYR A 66 0.08 SIDE CHAIN REMARK 500 17 TYR A 95 0.09 SIDE CHAIN REMARK 500 18 TYR A 53 0.07 SIDE CHAIN REMARK 500 18 ARG A 59 0.08 SIDE CHAIN REMARK 500 19 TYR A 53 0.07 SIDE CHAIN REMARK 500 19 TYR A 95 0.07 SIDE CHAIN REMARK 500 20 TYR A 53 0.07 SIDE CHAIN REMARK 500 20 TYR A 66 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19012 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-417790 RELATED DB: TARGETTRACK DBREF 2M4L A 2 99 UNP Q8A9G9 Q8A9G9_BACTN 22 119 SEQADV 2M4L GLY A 1 UNP Q8A9G9 EXPRESSION TAG SEQRES 1 A 99 GLY GLU ASP TRP THR GLU LEU ASN SER ASN ASN ILE ILE SEQRES 2 A 99 GLY TYR TRP SER THR GLY ILE GLU GLY THR HIS LYS LEU SEQRES 3 A 99 LEU SER PHE ASP GLU ASP GLY THR GLY SER PHE GLY ILE SEQRES 4 A 99 TYR SER ASN ALA THR PRO ILE SER PHE GLN MET PHE ASP SEQRES 5 A 99 TYR LYS ILE GLU GLU GLY ARG ILE TYR ILE TYR ASP VAL SEQRES 6 A 99 TYR PRO ASP GLU LYS THR PRO TYR TYR LEU ASP CYS LYS SEQRES 7 A 99 ILE SER GLY THR THR LEU LYS VAL GLU THR GLY SER GLU SEQRES 8 A 99 ALA GLY THR TYR LYS LYS GLN LYS SHEET 1 A 9 TYR A 73 LEU A 75 0 SHEET 2 A 9 ILE A 60 TYR A 66 -1 N ILE A 62 O TYR A 73 SHEET 3 A 9 THR A 44 LYS A 54 -1 N LYS A 54 O TYR A 61 SHEET 4 A 9 GLY A 35 SER A 41 -1 N GLY A 35 O PHE A 51 SHEET 5 A 9 LYS A 25 PHE A 29 -1 N LEU A 26 O GLY A 38 SHEET 6 A 9 GLY A 14 SER A 17 -1 N GLY A 14 O PHE A 29 SHEET 7 A 9 TYR A 95 LYS A 97 -1 O LYS A 96 N SER A 17 SHEET 8 A 9 THR A 83 VAL A 86 -1 N LEU A 84 O TYR A 95 SHEET 9 A 9 CYS A 77 ILE A 79 -1 N LYS A 78 O LYS A 85 CISPEP 1 TYR A 66 PRO A 67 1 -8.49 CISPEP 2 TYR A 66 PRO A 67 2 -9.05 CISPEP 3 TYR A 66 PRO A 67 3 -7.25 CISPEP 4 TYR A 66 PRO A 67 4 4.08 CISPEP 5 TYR A 66 PRO A 67 5 -14.38 CISPEP 6 TYR A 66 PRO A 67 6 -9.92 CISPEP 7 TYR A 66 PRO A 67 7 -2.66 CISPEP 8 TYR A 66 PRO A 67 8 -3.00 CISPEP 9 TYR A 66 PRO A 67 9 -4.21 CISPEP 10 TYR A 66 PRO A 67 10 -11.52 CISPEP 11 TYR A 66 PRO A 67 11 -3.10 CISPEP 12 TYR A 66 PRO A 67 12 -6.09 CISPEP 13 TYR A 66 PRO A 67 13 -10.70 CISPEP 14 TYR A 66 PRO A 67 14 -5.97 CISPEP 15 TYR A 66 PRO A 67 15 -8.36 CISPEP 16 TYR A 66 PRO A 67 16 -6.14 CISPEP 17 TYR A 66 PRO A 67 17 -7.98 CISPEP 18 TYR A 66 PRO A 67 18 0.98 CISPEP 19 TYR A 66 PRO A 67 19 -10.99 CISPEP 20 TYR A 66 PRO A 67 20 1.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1