HEADER RNA BINDING PROTEIN/RNA 17-MAY-13 2M8D TITLE STRUCTURE OF SRSF1 RRM2 IN COMPLEX WITH THE RNA 5'-UGAAGGAC-3' COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*UP*GP*AP*AP*GP*GP*AP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SERINE/ARGININE-RICH SPLICING FACTOR 1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: ALTERNATIVE-SPLICING FACTOR 1, ASF-1, SPLICING FACTOR, COMPND 9 ARGININE/SERINE-RICH 1, PRE-MRNA-SPLICING FACTOR SF2, P33 SUBUNIT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: SRSF1, ASF, SF2, SF2P33, SFRS1, OK/SW-CL.3; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SR PROTEIN, PSEUDO-RRM, RRM, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR A.CLERY,R.SINHA,O.ANCZUKOW,A.CORRIONERO,A.MOURSY,G.DAUBNER, AUTHOR 2 J.VALCARCEL,A.R.KRAINER,F.H.T.ALLAIN REVDAT 3 14-JUN-23 2M8D 1 REMARK SEQADV REVDAT 2 12-MAR-14 2M8D 1 JRNL REVDAT 1 10-JUL-13 2M8D 0 JRNL AUTH A.CLERY,R.SINHA,O.ANCZUKOW,A.CORRIONERO,A.MOURSY, JRNL AUTH 2 G.M.DAUBNER,J.VALCARCEL,A.R.KRAINER,F.H.ALLAIN JRNL TITL ISOLATED PSEUDO-RNA-RECOGNITION MOTIFS OF SR PROTEINS CAN JRNL TITL 2 REGULATE SPLICING USING A NONCANONICAL MODE OF RNA JRNL TITL 3 RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E2802 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23836656 JRNL DOI 10.1073/PNAS.1303445110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, D.A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103337. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 15N] RNA, 0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 6 C1' - O4' - C4' ANGL. DEV. = -4.6 DEGREES REMARK 500 1 G A 6 O4' - C1' - N9 ANGL. DEV. = 7.5 DEGREES REMARK 500 1 A A 7 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 G A 6 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 2 G A 6 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 2 A A 7 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 5 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 6 G A 5 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 6 G A 6 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 7 U A 1 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 7 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 7 VAL B 194 CA - CB - CG1 ANGL. DEV. = -9.1 DEGREES REMARK 500 8 U A 1 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 8 G A 5 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 8 G A 6 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 9 G A 2 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 9 G A 6 O4' - C1' - N9 ANGL. DEV. = 8.0 DEGREES REMARK 500 10 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 11 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 12 G A 2 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 12 G A 6 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 13 G A 2 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 13 G A 6 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 14 U A 1 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 14 G A 2 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 15 G A 6 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 15 VAL B 194 CA - CB - CG1 ANGL. DEV. = -9.2 DEGREES REMARK 500 16 G A 6 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA B 107 56.09 34.52 REMARK 500 1 ARG B 109 -8.26 -142.33 REMARK 500 1 SER B 116 -30.71 -166.18 REMARK 500 1 ARG B 118 -175.64 53.77 REMARK 500 1 GLU B 120 -31.21 -149.35 REMARK 500 1 ASP B 139 1.57 -64.97 REMARK 500 1 HIS B 140 -40.37 -136.68 REMARK 500 1 ARG B 154 17.39 59.24 REMARK 500 1 ARG B 173 -17.50 -143.28 REMARK 500 1 ARG B 191 78.76 -118.41 REMARK 500 1 ASP B 195 163.92 143.59 REMARK 500 2 PRO B 108 10.80 -69.29 REMARK 500 2 ARG B 109 18.24 -143.64 REMARK 500 2 ARG B 117 4.59 53.52 REMARK 500 2 SER B 119 -94.37 -140.10 REMARK 500 2 GLU B 120 -30.51 -153.89 REMARK 500 2 ARG B 122 165.33 46.30 REMARK 500 2 ASP B 139 1.66 -65.98 REMARK 500 2 HIS B 140 -38.92 -135.38 REMARK 500 2 ARG B 173 -16.50 -143.11 REMARK 500 2 HIS B 183 -177.40 -58.30 REMARK 500 2 GLU B 184 -13.38 67.98 REMARK 500 2 ALA B 188 -162.59 -161.80 REMARK 500 2 ASP B 195 162.66 143.17 REMARK 500 3 TYR B 112 14.21 -147.91 REMARK 500 3 ARG B 117 -5.02 54.91 REMARK 500 3 SER B 119 -126.20 -146.29 REMARK 500 3 PRO B 130 -6.52 -54.17 REMARK 500 3 SER B 131 13.03 -146.71 REMARK 500 3 ASP B 139 3.04 -68.78 REMARK 500 3 HIS B 140 -41.17 -132.51 REMARK 500 3 VAL B 192 89.33 -69.38 REMARK 500 3 ASP B 195 166.49 130.68 REMARK 500 4 TYR B 112 22.19 49.43 REMARK 500 4 SER B 116 -48.22 -167.23 REMARK 500 4 ARG B 117 24.87 -173.01 REMARK 500 4 SER B 119 -97.33 -130.75 REMARK 500 4 GLU B 120 -29.56 -153.53 REMARK 500 4 ARG B 122 158.21 39.73 REMARK 500 4 PRO B 130 -6.87 -51.92 REMARK 500 4 CYS B 148 -31.63 -130.75 REMARK 500 4 GLU B 184 26.23 -156.04 REMARK 500 4 GLU B 186 -170.03 51.72 REMARK 500 4 ASP B 195 163.36 141.56 REMARK 500 5 ALA B 107 25.26 -147.92 REMARK 500 5 SER B 116 -41.19 -162.67 REMARK 500 5 ARG B 117 12.78 -147.27 REMARK 500 5 SER B 119 -124.16 -150.85 REMARK 500 5 ASP B 139 2.79 -67.61 REMARK 500 5 HIS B 140 -38.24 -131.42 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 A A 3 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19248 RELATED DB: BMRB DBREF 2M8D B 107 196 UNP Q07955 SRSF1_HUMAN 107 196 DBREF 2M8D A 1 8 PDB 2M8D 2M8D 1 8 SEQADV 2M8D MET B 106 UNP Q07955 INITIATING METHIONINE SEQRES 1 A 8 U G A A G G A C SEQRES 1 B 91 MET ALA PRO ARG GLY ARG TYR GLY PRO PRO SER ARG ARG SEQRES 2 B 91 SER GLU ASN ARG VAL VAL VAL SER GLY LEU PRO PRO SER SEQRES 3 B 91 GLY SER TRP GLN ASP LEU LYS ASP HIS MET ARG GLU ALA SEQRES 4 B 91 GLY ASP VAL CYS TYR ALA ASP VAL TYR ARG ASP GLY THR SEQRES 5 B 91 GLY VAL VAL GLU PHE VAL ARG LYS GLU ASP MET THR TYR SEQRES 6 B 91 ALA VAL ARG LYS LEU ASP ASN THR LYS PHE ARG SER HIS SEQRES 7 B 91 GLU GLY GLU THR ALA TYR ILE ARG VAL LYS VAL ASP GLY HELIX 1 1 SER B 133 ARG B 142 1 10 HELIX 2 2 ARG B 164 VAL B 172 1 9 SHEET 1 A 5 VAL B 147 VAL B 152 0 SHEET 2 A 5 THR B 157 PHE B 162 -1 O VAL B 159 N ASP B 151 SHEET 3 A 5 ARG B 122 SER B 126 -1 N VAL B 125 O GLY B 158 SHEET 4 A 5 THR B 187 LYS B 193 -1 O ARG B 191 N SER B 126 SHEET 5 A 5 THR B 178 ARG B 181 -1 N PHE B 180 O ALA B 188 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1