data_2M8O # _entry.id 2M8O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M8O pdb_00002m8o 10.2210/pdb2m8o/pdb RCSB RCSB103348 ? ? BMRB 19263 ? 10.13018/BMR19263 WWPDB D_1000103348 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-22 2 'Structure model' 1 1 2014-02-26 3 'Structure model' 1 2 2014-05-14 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 5 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M8O _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-05-23 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 19262 BMRB 'Entry for the same peptide in the presence of hexafluoroisoprpanol' unspecified 2m8m PDB 'Entry for the same peptide in the presence of hexafluoroisoprpanol' unspecified 19263 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serrano, S.' 1 'Huarte, N.' 2 'Nieva, J.L.' 3 'Jimenez, M.' 4 # _citation.id primary _citation.title ;Structure and Immunogenicity of a Peptide Vaccine, Including the Complete HIV-1 gp41 2F5 Epitope: IMPLICATIONS FOR ANTIBODY RECOGNITION MECHANISM AND IMMUNOGEN DESIGN. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 289 _citation.page_first 6565 _citation.page_last 6580 _citation.year 2014 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24429284 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.527747 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serrano, S.' 1 ? primary 'Araujo, A.' 2 ? primary 'Apellaniz, B.' 3 ? primary 'Bryson, S.' 4 ? primary 'Carravilla, P.' 5 ? primary 'de la Arada, I.' 6 ? primary 'Huarte, N.' 7 ? primary 'Rujas, E.' 8 ? primary 'Pai, E.F.' 9 ? primary 'Arrondo, J.L.' 10 ? primary 'Domene, C.' 11 ? primary 'Jimenez, M.A.' 12 ? primary 'Nieva, J.L.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Transmembrane protein gp41' _entity.formula_weight 3656.105 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 656-683' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TM, Glycoprotein 41, gp41' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NEQELLELDKWASLWNWFNITNWLWYIK _entity_poly.pdbx_seq_one_letter_code_can NEQELLELDKWASLWNWFNITNWLWYIK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 GLU n 1 3 GLN n 1 4 GLU n 1 5 LEU n 1 6 LEU n 1 7 GLU n 1 8 LEU n 1 9 ASP n 1 10 LYS n 1 11 TRP n 1 12 ALA n 1 13 SER n 1 14 LEU n 1 15 TRP n 1 16 ASN n 1 17 TRP n 1 18 PHE n 1 19 ASN n 1 20 ILE n 1 21 THR n 1 22 ASN n 1 23 TRP n 1 24 LEU n 1 25 TRP n 1 26 TYR n 1 27 ILE n 1 28 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Human immunodeficiency virus type 1' _pdbx_entity_src_syn.organism_common_name HIV-1 _pdbx_entity_src_syn.ncbi_taxonomy_id 11702 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LYS 28 28 28 LYS LYS A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M8O _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M8O _struct.title 'NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in DPC' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M8O _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV-1 gp41 protein, neutralizing epitope, peptide vaccine, VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENV_HV1SC _struct_ref.pdbx_db_accession P05878 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NEQELLELDKWASLWNWFNITNWLWYIK _struct_ref.pdbx_align_begin 656 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M8O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05878 _struct_ref_seq.db_align_beg 656 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 683 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 28 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 28 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 4 GLU A 7 ? ? -66.15 0.68 2 19 GLU A 7 ? ? -67.99 0.75 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M8O _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M8O _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '0.5 mM MPERp, 90 % H2O, 10 % [U-100% 2H] D2O, 20 mM [U-99% 2H] DPC, 2 mM HEPES, 0.1 mM DSS, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id MPERp-1 0.5 ? mM ? 1 H2O-2 90 ? % ? 1 D2O-3 10 ? % '[U-100% 2H]' 1 DPC-4 20 ? mM '[U-99% 2H]' 1 HEPES-5 2 ? mM ? 1 DSS-6 0.1 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 2 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H COSY' 1 2 1 '2D 1H-1H TOCSY' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '2D 1H-13C HSQC aliphatic' # _pdbx_nmr_refine.entry_id 2M8O _pdbx_nmr_refine.method 'torsion angle dynamics, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 5 ? refinement CYANA ? 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 ILE N N N N 86 ILE CA C N S 87 ILE C C N N 88 ILE O O N N 89 ILE CB C N S 90 ILE CG1 C N N 91 ILE CG2 C N N 92 ILE CD1 C N N 93 ILE OXT O N N 94 ILE H H N N 95 ILE H2 H N N 96 ILE HA H N N 97 ILE HB H N N 98 ILE HG12 H N N 99 ILE HG13 H N N 100 ILE HG21 H N N 101 ILE HG22 H N N 102 ILE HG23 H N N 103 ILE HD11 H N N 104 ILE HD12 H N N 105 ILE HD13 H N N 106 ILE HXT H N N 107 LEU N N N N 108 LEU CA C N S 109 LEU C C N N 110 LEU O O N N 111 LEU CB C N N 112 LEU CG C N N 113 LEU CD1 C N N 114 LEU CD2 C N N 115 LEU OXT O N N 116 LEU H H N N 117 LEU H2 H N N 118 LEU HA H N N 119 LEU HB2 H N N 120 LEU HB3 H N N 121 LEU HG H N N 122 LEU HD11 H N N 123 LEU HD12 H N N 124 LEU HD13 H N N 125 LEU HD21 H N N 126 LEU HD22 H N N 127 LEU HD23 H N N 128 LEU HXT H N N 129 LYS N N N N 130 LYS CA C N S 131 LYS C C N N 132 LYS O O N N 133 LYS CB C N N 134 LYS CG C N N 135 LYS CD C N N 136 LYS CE C N N 137 LYS NZ N N N 138 LYS OXT O N N 139 LYS H H N N 140 LYS H2 H N N 141 LYS HA H N N 142 LYS HB2 H N N 143 LYS HB3 H N N 144 LYS HG2 H N N 145 LYS HG3 H N N 146 LYS HD2 H N N 147 LYS HD3 H N N 148 LYS HE2 H N N 149 LYS HE3 H N N 150 LYS HZ1 H N N 151 LYS HZ2 H N N 152 LYS HZ3 H N N 153 LYS HXT H N N 154 PHE N N N N 155 PHE CA C N S 156 PHE C C N N 157 PHE O O N N 158 PHE CB C N N 159 PHE CG C Y N 160 PHE CD1 C Y N 161 PHE CD2 C Y N 162 PHE CE1 C Y N 163 PHE CE2 C Y N 164 PHE CZ C Y N 165 PHE OXT O N N 166 PHE H H N N 167 PHE H2 H N N 168 PHE HA H N N 169 PHE HB2 H N N 170 PHE HB3 H N N 171 PHE HD1 H N N 172 PHE HD2 H N N 173 PHE HE1 H N N 174 PHE HE2 H N N 175 PHE HZ H N N 176 PHE HXT H N N 177 SER N N N N 178 SER CA C N S 179 SER C C N N 180 SER O O N N 181 SER CB C N N 182 SER OG O N N 183 SER OXT O N N 184 SER H H N N 185 SER H2 H N N 186 SER HA H N N 187 SER HB2 H N N 188 SER HB3 H N N 189 SER HG H N N 190 SER HXT H N N 191 THR N N N N 192 THR CA C N S 193 THR C C N N 194 THR O O N N 195 THR CB C N R 196 THR OG1 O N N 197 THR CG2 C N N 198 THR OXT O N N 199 THR H H N N 200 THR H2 H N N 201 THR HA H N N 202 THR HB H N N 203 THR HG1 H N N 204 THR HG21 H N N 205 THR HG22 H N N 206 THR HG23 H N N 207 THR HXT H N N 208 TRP N N N N 209 TRP CA C N S 210 TRP C C N N 211 TRP O O N N 212 TRP CB C N N 213 TRP CG C Y N 214 TRP CD1 C Y N 215 TRP CD2 C Y N 216 TRP NE1 N Y N 217 TRP CE2 C Y N 218 TRP CE3 C Y N 219 TRP CZ2 C Y N 220 TRP CZ3 C Y N 221 TRP CH2 C Y N 222 TRP OXT O N N 223 TRP H H N N 224 TRP H2 H N N 225 TRP HA H N N 226 TRP HB2 H N N 227 TRP HB3 H N N 228 TRP HD1 H N N 229 TRP HE1 H N N 230 TRP HE3 H N N 231 TRP HZ2 H N N 232 TRP HZ3 H N N 233 TRP HH2 H N N 234 TRP HXT H N N 235 TYR N N N N 236 TYR CA C N S 237 TYR C C N N 238 TYR O O N N 239 TYR CB C N N 240 TYR CG C Y N 241 TYR CD1 C Y N 242 TYR CD2 C Y N 243 TYR CE1 C Y N 244 TYR CE2 C Y N 245 TYR CZ C Y N 246 TYR OH O N N 247 TYR OXT O N N 248 TYR H H N N 249 TYR H2 H N N 250 TYR HA H N N 251 TYR HB2 H N N 252 TYR HB3 H N N 253 TYR HD1 H N N 254 TYR HD2 H N N 255 TYR HE1 H N N 256 TYR HE2 H N N 257 TYR HH H N N 258 TYR HXT H N N 259 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 ILE N CA sing N N 81 ILE N H sing N N 82 ILE N H2 sing N N 83 ILE CA C sing N N 84 ILE CA CB sing N N 85 ILE CA HA sing N N 86 ILE C O doub N N 87 ILE C OXT sing N N 88 ILE CB CG1 sing N N 89 ILE CB CG2 sing N N 90 ILE CB HB sing N N 91 ILE CG1 CD1 sing N N 92 ILE CG1 HG12 sing N N 93 ILE CG1 HG13 sing N N 94 ILE CG2 HG21 sing N N 95 ILE CG2 HG22 sing N N 96 ILE CG2 HG23 sing N N 97 ILE CD1 HD11 sing N N 98 ILE CD1 HD12 sing N N 99 ILE CD1 HD13 sing N N 100 ILE OXT HXT sing N N 101 LEU N CA sing N N 102 LEU N H sing N N 103 LEU N H2 sing N N 104 LEU CA C sing N N 105 LEU CA CB sing N N 106 LEU CA HA sing N N 107 LEU C O doub N N 108 LEU C OXT sing N N 109 LEU CB CG sing N N 110 LEU CB HB2 sing N N 111 LEU CB HB3 sing N N 112 LEU CG CD1 sing N N 113 LEU CG CD2 sing N N 114 LEU CG HG sing N N 115 LEU CD1 HD11 sing N N 116 LEU CD1 HD12 sing N N 117 LEU CD1 HD13 sing N N 118 LEU CD2 HD21 sing N N 119 LEU CD2 HD22 sing N N 120 LEU CD2 HD23 sing N N 121 LEU OXT HXT sing N N 122 LYS N CA sing N N 123 LYS N H sing N N 124 LYS N H2 sing N N 125 LYS CA C sing N N 126 LYS CA CB sing N N 127 LYS CA HA sing N N 128 LYS C O doub N N 129 LYS C OXT sing N N 130 LYS CB CG sing N N 131 LYS CB HB2 sing N N 132 LYS CB HB3 sing N N 133 LYS CG CD sing N N 134 LYS CG HG2 sing N N 135 LYS CG HG3 sing N N 136 LYS CD CE sing N N 137 LYS CD HD2 sing N N 138 LYS CD HD3 sing N N 139 LYS CE NZ sing N N 140 LYS CE HE2 sing N N 141 LYS CE HE3 sing N N 142 LYS NZ HZ1 sing N N 143 LYS NZ HZ2 sing N N 144 LYS NZ HZ3 sing N N 145 LYS OXT HXT sing N N 146 PHE N CA sing N N 147 PHE N H sing N N 148 PHE N H2 sing N N 149 PHE CA C sing N N 150 PHE CA CB sing N N 151 PHE CA HA sing N N 152 PHE C O doub N N 153 PHE C OXT sing N N 154 PHE CB CG sing N N 155 PHE CB HB2 sing N N 156 PHE CB HB3 sing N N 157 PHE CG CD1 doub Y N 158 PHE CG CD2 sing Y N 159 PHE CD1 CE1 sing Y N 160 PHE CD1 HD1 sing N N 161 PHE CD2 CE2 doub Y N 162 PHE CD2 HD2 sing N N 163 PHE CE1 CZ doub Y N 164 PHE CE1 HE1 sing N N 165 PHE CE2 CZ sing Y N 166 PHE CE2 HE2 sing N N 167 PHE CZ HZ sing N N 168 PHE OXT HXT sing N N 169 SER N CA sing N N 170 SER N H sing N N 171 SER N H2 sing N N 172 SER CA C sing N N 173 SER CA CB sing N N 174 SER CA HA sing N N 175 SER C O doub N N 176 SER C OXT sing N N 177 SER CB OG sing N N 178 SER CB HB2 sing N N 179 SER CB HB3 sing N N 180 SER OG HG sing N N 181 SER OXT HXT sing N N 182 THR N CA sing N N 183 THR N H sing N N 184 THR N H2 sing N N 185 THR CA C sing N N 186 THR CA CB sing N N 187 THR CA HA sing N N 188 THR C O doub N N 189 THR C OXT sing N N 190 THR CB OG1 sing N N 191 THR CB CG2 sing N N 192 THR CB HB sing N N 193 THR OG1 HG1 sing N N 194 THR CG2 HG21 sing N N 195 THR CG2 HG22 sing N N 196 THR CG2 HG23 sing N N 197 THR OXT HXT sing N N 198 TRP N CA sing N N 199 TRP N H sing N N 200 TRP N H2 sing N N 201 TRP CA C sing N N 202 TRP CA CB sing N N 203 TRP CA HA sing N N 204 TRP C O doub N N 205 TRP C OXT sing N N 206 TRP CB CG sing N N 207 TRP CB HB2 sing N N 208 TRP CB HB3 sing N N 209 TRP CG CD1 doub Y N 210 TRP CG CD2 sing Y N 211 TRP CD1 NE1 sing Y N 212 TRP CD1 HD1 sing N N 213 TRP CD2 CE2 doub Y N 214 TRP CD2 CE3 sing Y N 215 TRP NE1 CE2 sing Y N 216 TRP NE1 HE1 sing N N 217 TRP CE2 CZ2 sing Y N 218 TRP CE3 CZ3 doub Y N 219 TRP CE3 HE3 sing N N 220 TRP CZ2 CH2 doub Y N 221 TRP CZ2 HZ2 sing N N 222 TRP CZ3 CH2 sing Y N 223 TRP CZ3 HZ3 sing N N 224 TRP CH2 HH2 sing N N 225 TRP OXT HXT sing N N 226 TYR N CA sing N N 227 TYR N H sing N N 228 TYR N H2 sing N N 229 TYR CA C sing N N 230 TYR CA CB sing N N 231 TYR CA HA sing N N 232 TYR C O doub N N 233 TYR C OXT sing N N 234 TYR CB CG sing N N 235 TYR CB HB2 sing N N 236 TYR CB HB3 sing N N 237 TYR CG CD1 doub Y N 238 TYR CG CD2 sing Y N 239 TYR CD1 CE1 sing Y N 240 TYR CD1 HD1 sing N N 241 TYR CD2 CE2 doub Y N 242 TYR CD2 HD2 sing N N 243 TYR CE1 CZ doub Y N 244 TYR CE1 HE1 sing N N 245 TYR CE2 CZ sing Y N 246 TYR CE2 HE2 sing N N 247 TYR CZ OH sing N N 248 TYR OH HH sing N N 249 TYR OXT HXT sing N N 250 # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2M8O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_