HEADER CELL CYCLE 28-MAY-13 2M8T TITLE SOLUTION NMR STRUCTURE OF THE V209M VARIANT OF THE HUMAN PRION PROTEIN TITLE 2 (RESIDUES 90-231) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-231; COMPND 5 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRIP, PRNP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: HUPRP KEYWDS MEMBRANE PROTEIN, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,K.SUREWICZ,W.SUREWICZ,F.D.SOENNICHSEN REVDAT 2 14-JUN-23 2M8T 1 REMARK SEQADV REVDAT 1 11-SEP-13 2M8T 0 JRNL AUTH Q.KONG,J.L.MILLS,B.KUNDU,X.LI,L.QING,K.SUREWICZ,I.CALI, JRNL AUTH 2 S.HUANG,M.ZHENG,W.SWIETNICKI,F.D.SONNICHSEN,P.GAMBETTI, JRNL AUTH 3 W.K.SUREWICZ JRNL TITL THERMODYNAMIC STABILIZATION OF THE FOLDED DOMAIN OF PRION JRNL TITL 2 PROTEIN INHIBITS PRION INFECTION IN VIVO. JRNL REF CELL REP V. 4 248 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23871665 JRNL DOI 10.1016/J.CELREP.2013.06.030 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR, CYANA, CNS REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000103353. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 MAJOR PRION PROTEIN, 10 MM REMARK 210 SODIUM ACETATE, 0.005 W/V SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 1.0 MM [U- REMARK 210 5% 13C; U-99% 15N] MAJOR PRION REMARK 210 PROTEIN, 10 MM SODIUM ACETATE, REMARK 210 0.005 W/V SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 3D REMARK 210 HNCA; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D HCCH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROSA, TALOS, CYANA, CNS, REMARK 210 MOLMOL, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 MET A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 125 -169.04 64.58 REMARK 500 1 ALA A 133 173.22 67.37 REMARK 500 1 SER A 170 -163.62 61.36 REMARK 500 1 ARG A 228 -74.47 68.05 REMARK 500 2 ARG A 136 75.33 -153.08 REMARK 500 2 GLU A 168 88.64 45.30 REMARK 500 2 ASN A 171 124.66 68.95 REMARK 500 2 ARG A 228 -174.28 68.22 REMARK 500 3 ARG A 136 101.89 -163.60 REMARK 500 3 PHE A 141 -93.37 -78.65 REMARK 500 3 SER A 170 -70.41 -89.36 REMARK 500 3 ARG A 228 87.54 63.55 REMARK 500 3 SER A 230 108.38 62.01 REMARK 500 4 PHE A 141 -81.19 -85.00 REMARK 500 4 SER A 170 77.80 64.81 REMARK 500 4 GLN A 172 -75.35 -105.02 REMARK 500 5 ASN A 171 155.12 71.01 REMARK 500 6 ALA A 133 171.67 68.02 REMARK 500 6 PHE A 141 -82.64 -85.53 REMARK 500 7 LEU A 125 -174.08 62.41 REMARK 500 7 SER A 170 -50.10 -128.98 REMARK 500 7 ASN A 171 -174.01 65.75 REMARK 500 7 ASN A 197 -164.72 -169.62 REMARK 500 8 LEU A 125 -177.46 59.86 REMARK 500 8 PHE A 141 -91.55 -93.22 REMARK 500 8 SER A 170 1.97 -160.41 REMARK 500 8 GLN A 172 -45.72 -148.25 REMARK 500 9 SER A 132 37.88 -85.31 REMARK 500 9 ALA A 133 -176.66 69.20 REMARK 500 9 PHE A 141 -91.74 -101.29 REMARK 500 9 PRO A 165 73.03 -69.33 REMARK 500 9 SER A 170 -68.90 -132.61 REMARK 500 10 SER A 132 93.96 -64.16 REMARK 500 10 PRO A 137 36.49 -79.19 REMARK 500 10 PHE A 141 -90.08 -99.59 REMARK 500 10 GLN A 172 -69.08 -125.51 REMARK 500 11 ALA A 133 -167.34 65.39 REMARK 500 11 MET A 166 -87.29 -67.08 REMARK 500 11 ASP A 167 -58.33 169.91 REMARK 500 11 GLN A 227 -154.64 -129.05 REMARK 500 12 VAL A 122 91.16 61.79 REMARK 500 12 SER A 132 -74.59 71.61 REMARK 500 12 ALA A 133 -175.09 64.33 REMARK 500 12 PHE A 141 -79.67 -93.11 REMARK 500 12 ASP A 167 -81.41 -72.07 REMARK 500 12 GLU A 168 -56.32 70.25 REMARK 500 12 ARG A 228 -127.36 -120.47 REMARK 500 12 SER A 230 -172.70 170.95 REMARK 500 13 ALA A 133 156.93 72.71 REMARK 500 13 ARG A 136 81.25 -152.61 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19268 RELATED DB: BMRB DBREF 2M8T A 90 231 UNP P04156 PRIO_HUMAN 90 231 SEQADV 2M8T GLY A 86 UNP P04156 EXPRESSION TAG SEQADV 2M8T SER A 87 UNP P04156 EXPRESSION TAG SEQADV 2M8T ASP A 88 UNP P04156 EXPRESSION TAG SEQADV 2M8T PRO A 89 UNP P04156 EXPRESSION TAG SEQADV 2M8T MET A 209 UNP P04156 VAL 209 ENGINEERED MUTATION SEQRES 1 A 146 GLY SER ASP PRO GLY GLN GLY GLY GLY THR HIS SER GLN SEQRES 2 A 146 TRP ASN LYS PRO SER LYS PRO LYS THR ASN MET LYS HIS SEQRES 3 A 146 MET ALA GLY ALA ALA ALA ALA GLY ALA VAL VAL GLY GLY SEQRES 4 A 146 LEU GLY GLY TYR MET LEU GLY SER ALA MET SER ARG PRO SEQRES 5 A 146 ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR TYR SEQRES 6 A 146 ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR TYR SEQRES 7 A 146 ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE VAL SEQRES 8 A 146 HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR VAL SEQRES 9 A 146 THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR ASP SEQRES 10 A 146 VAL LYS MET MET GLU ARG MET VAL GLU GLN MET CYS ILE SEQRES 11 A 146 THR GLN TYR GLU ARG GLU SER GLN ALA TYR TYR GLN ARG SEQRES 12 A 146 GLY SER SER HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 ASN A 171 THR A 193 1 23 HELIX 3 3 THR A 199 ALA A 224 1 26 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1