HEADER SPLICING/RNA 22-JUL-13 2MB0 TITLE SOLUTION STRUCTURE OF HNRNP G RRM IN COMPLEX WITH THE RNA 5'-AUCAAA-3' COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING MOTIF PROTEIN, X CHROMOSOME; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: GLYCOPROTEIN P43, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G, COMPND 5 HNRNP G, RNA-BINDING MOTIF PROTEIN, X CHROMOSOME, N-TERMINALLY COMPND 6 PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA_(5'-R(*AP*UP*CP*AP*AP*A)-3'); COMPND 10 CHAIN: A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBMX, HNRPG, RBMXP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS HNRNP G, SPLICING, RRM, SMN, SMA, SPLICING-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.MOURSY,F.H.-T.ALLAIN,A.CLERY REVDAT 3 25-JUN-14 2MB0 1 JRNL REVDAT 2 14-MAY-14 2MB0 1 JRNL REVDAT 1 09-APR-14 2MB0 0 JRNL AUTH A.MOURSY,F.H.ALLAIN,A.CLERY JRNL TITL CHARACTERIZATION OF THE RNA RECOGNITION MODE OF HNRNP G JRNL TITL 2 EXTENDS ITS ROLE IN SMN2 SPLICING REGULATION. JRNL REF NUCLEIC ACIDS RES. V. 42 6659 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24692659 JRNL DOI 10.1093/NAR/GKU244 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB103427. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PROTEIN_1, 1 REMARK 210 MM RNA (5'-R(*AP*UP*CP*AP*AP*A)- REMARK 210 3'), 90% H2O/10% D2O; 1 MM [U- REMARK 210 100% 15N] PROTEIN_1, 1 MM RNA (5' REMARK 210 -R(*AP*UP*CP*AP*AP*A)-3'), 100% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN_1, 1 MM RNA (5'-R(* REMARK 210 AP*UP*CP*AP*AP*A)-3'), 90% H2O/ REMARK 210 10% D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN_1, 1 MM RNA (5'-R(* REMARK 210 AP*UP*CP*AP*AP*A)-3'), 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 1H NOESY; 3D CBCA(CO)NH; 3D HNCA; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A A 99 O4' - C1' - N9 ANGL. DEV. = 6.2 DEGREES REMARK 500 2 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 3 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 3 A A 100 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 4 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 4 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 A A 99 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 5 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 6 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 7 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 8 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 9 A A 99 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 9 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 9 A A 101 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 10 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 11 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 12 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 12 A A 101 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 13 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 14 A A 99 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 14 A A 101 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 15 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.6 DEGREES REMARK 500 16 A A 99 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 16 A A 100 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 17 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.9 DEGREES REMARK 500 17 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 18 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 18 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 19 A A 99 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 19 A A 100 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 20 A A 99 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 20 A A 100 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG B 6 147.50 52.17 REMARK 500 1 LYS B 47 -90.71 -73.66 REMARK 500 1 ASP B 68 -52.29 -128.74 REMARK 500 1 LYS B 72 -152.97 -82.23 REMARK 500 1 ARG B 94 179.39 56.17 REMARK 500 2 ASP B 5 -70.99 -51.99 REMARK 500 2 ILE B 12 76.85 -119.62 REMARK 500 2 LYS B 47 -106.46 -74.00 REMARK 500 2 ASP B 68 -52.25 -127.87 REMARK 500 2 LYS B 72 -154.17 -81.51 REMARK 500 2 ASP B 75 -22.24 61.53 REMARK 500 3 ARG B 6 147.02 60.98 REMARK 500 3 ASP B 68 -51.68 -129.16 REMARK 500 3 LYS B 72 -153.72 -81.54 REMARK 500 3 ASP B 75 -21.32 61.19 REMARK 500 3 SER B 91 20.20 -144.17 REMARK 500 3 ARG B 93 -142.28 49.97 REMARK 500 4 ASP B 68 -52.27 -130.61 REMARK 500 4 LYS B 72 -153.98 -80.54 REMARK 500 4 GLU B 90 -169.31 49.47 REMARK 500 4 ARG B 94 11.70 -141.40 REMARK 500 5 ARG B 6 107.60 45.96 REMARK 500 5 THR B 17 -13.42 68.76 REMARK 500 5 ASN B 46 10.35 59.62 REMARK 500 5 ASP B 68 -53.11 -128.28 REMARK 500 5 LYS B 72 -153.96 -81.43 REMARK 500 5 ASP B 75 -2.02 57.16 REMARK 500 6 ARG B 6 137.75 60.70 REMARK 500 6 ILE B 12 77.56 -118.94 REMARK 500 6 ASN B 46 14.12 58.18 REMARK 500 6 ASP B 68 -51.31 -132.28 REMARK 500 6 LEU B 74 -63.90 -94.77 REMARK 500 7 ARG B 6 106.70 49.83 REMARK 500 7 ILE B 12 77.84 -119.05 REMARK 500 7 ASN B 46 13.24 59.00 REMARK 500 7 ASP B 68 -54.20 -129.01 REMARK 500 7 LYS B 72 -153.72 -81.72 REMARK 500 7 ASP B 75 -21.12 61.33 REMARK 500 8 ASP B 5 48.60 -74.44 REMARK 500 8 ARG B 6 153.02 61.30 REMARK 500 8 LYS B 47 -116.55 -76.01 REMARK 500 8 ASP B 68 -52.91 -127.31 REMARK 500 8 LYS B 72 -156.94 -82.72 REMARK 500 8 LEU B 74 -65.99 -100.83 REMARK 500 9 ARG B 6 102.94 46.11 REMARK 500 9 ASN B 46 11.71 59.61 REMARK 500 9 ASP B 68 -50.96 -133.22 REMARK 500 9 ASP B 75 -24.04 62.25 REMARK 500 10 ARG B 6 118.55 46.87 REMARK 500 10 ASN B 46 11.26 58.86 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19382 RELATED DB: BMRB DBREF 2MB0 B 1 95 UNP P38159 RBMX_HUMAN 1 95 DBREF 2MB0 A 96 101 PDB 2MB0 2MB0 96 101 SEQRES 1 B 95 MET VAL GLU ALA ASP ARG PRO GLY LYS LEU PHE ILE GLY SEQRES 2 B 95 GLY LEU ASN THR GLU THR ASN GLU LYS ALA LEU GLU ALA SEQRES 3 B 95 VAL PHE GLY LYS TYR GLY ARG ILE VAL GLU VAL LEU LEU SEQRES 4 B 95 MET LYS ASP ARG GLU THR ASN LYS SER ARG GLY PHE ALA SEQRES 5 B 95 PHE VAL THR PHE GLU SER PRO ALA ASP ALA LYS ASP ALA SEQRES 6 B 95 ALA ARG ASP MET ASN GLY LYS SER LEU ASP GLY LYS ALA SEQRES 7 B 95 ILE LYS VAL GLU GLN ALA THR LYS PRO SER PHE GLU SER SEQRES 8 B 95 GLY ARG ARG GLY SEQRES 1 A 6 A U C A A A HELIX 1 1 ASN B 20 GLY B 29 1 10 HELIX 2 2 ALA B 60 ARG B 67 1 8 SHEET 1 A 4 ILE B 34 LEU B 39 0 SHEET 2 A 4 PHE B 51 PHE B 56 -1 O THR B 55 N GLU B 36 SHEET 3 A 4 LYS B 9 GLY B 13 -1 N ILE B 12 O ALA B 52 SHEET 4 A 4 LYS B 80 GLN B 83 -1 O GLU B 82 N PHE B 11 SHEET 1 B 2 SER B 73 LEU B 74 0 SHEET 2 B 2 LYS B 77 ALA B 78 -1 O LYS B 77 N LEU B 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1