data_2ME4 # _entry.id 2ME4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ME4 pdb_00002me4 10.2210/pdb2me4/pdb RCSB RCSB103526 ? ? BMRB 19515 ? 10.13018/BMR19515 WWPDB D_1000103526 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-09 2 'Structure model' 1 1 2014-03-05 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2ME4 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 19515 BMRB . unspecified 2PV6 PDB . unspecified 2ME1 PDB . unspecified 2ME2 PDB . unspecified 2ME3 PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sun, Z.J.' 1 'Wagner, G.' 2 'Reinherz, E.L.' 3 'Kim, M.' 4 'Song, L.' 5 'Choi, J.' 6 'Cheng, Y.' 7 'Chowdhury, B.' 8 'Bellot, G.' 9 'Shih, W.' 10 # _citation.id primary _citation.title ;Disruption of Helix-Capping Residues 671 and 674 Reveals a Role in HIV-1 Entry for a Specialized Hinge Segment of the Membrane Proximal External Region of gp41. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 426 _citation.page_first 1095 _citation.page_last 1108 _citation.year 2014 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24075869 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2013.09.030 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Z.Y.' 1 ? primary 'Cheng, Y.' 2 ? primary 'Kim, M.' 3 ? primary 'Song, L.' 4 ? primary 'Choi, J.' 5 ? primary 'Kudahl, U.J.' 6 ? primary 'Brusic, V.' 7 ? primary 'Chowdhury, B.' 8 ? primary 'Yu, L.' 9 ? primary 'Seaman, M.S.' 10 ? primary 'Bellot, G.' 11 ? primary 'Shih, W.M.' 12 ? primary 'Wagner, G.' 13 ? primary 'Reinherz, E.L.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Envelope glycoprotein gp160' _entity.formula_weight 3503.053 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'membrane proximal external region (UNP residues 671-697)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name MPER-PB7 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code EKDLLALDKWNSLWSWFDITKWLWYIK _entity_poly.pdbx_seq_one_letter_code_can EKDLLALDKWNSLWSWFDITKWLWYIK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LYS n 1 3 ASP n 1 4 LEU n 1 5 LEU n 1 6 ALA n 1 7 LEU n 1 8 ASP n 1 9 LYS n 1 10 TRP n 1 11 ASN n 1 12 SER n 1 13 LEU n 1 14 TRP n 1 15 SER n 1 16 TRP n 1 17 PHE n 1 18 ASP n 1 19 ILE n 1 20 THR n 1 21 LYS n 1 22 TRP n 1 23 LEU n 1 24 TRP n 1 25 TYR n 1 26 ILE n 1 27 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene env _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'clade C, ZM197M.PB7 isolate' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET31 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 657 657 GLU GLU A . n A 1 2 LYS 2 658 658 LYS LYS A . n A 1 3 ASP 3 659 659 ASP ASP A . n A 1 4 LEU 4 660 660 LEU LEU A . n A 1 5 LEU 5 661 661 LEU LEU A . n A 1 6 ALA 6 662 662 ALA ALA A . n A 1 7 LEU 7 663 663 LEU LEU A . n A 1 8 ASP 8 664 664 ASP ASP A . n A 1 9 LYS 9 665 665 LYS LYS A . n A 1 10 TRP 10 666 666 TRP TRP A . n A 1 11 ASN 11 667 667 ASN ASN A . n A 1 12 SER 12 668 668 SER SER A . n A 1 13 LEU 13 669 669 LEU LEU A . n A 1 14 TRP 14 670 670 TRP TRP A . n A 1 15 SER 15 671 671 SER SER A . n A 1 16 TRP 16 672 672 TRP TRP A . n A 1 17 PHE 17 673 673 PHE PHE A . n A 1 18 ASP 18 674 674 ASP ASP A . n A 1 19 ILE 19 675 675 ILE ILE A . n A 1 20 THR 20 676 676 THR THR A . n A 1 21 LYS 21 677 677 LYS LYS A . n A 1 22 TRP 22 678 678 TRP TRP A . n A 1 23 LEU 23 679 679 LEU LEU A . n A 1 24 TRP 24 680 680 TRP TRP A . n A 1 25 TYR 25 681 681 TYR TYR A . n A 1 26 ILE 26 682 682 ILE ILE A . n A 1 27 LYS 27 683 683 LYS LYS A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2ME4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2ME4 _struct.title 'HIV-1 gp41 clade C Membrane Proximal External Region peptide in DPC micelle' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ME4 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'MPER, viral fusion, helix-hinge-helix, MEMBRANE PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q27Q69_9HIV1 _struct_ref.pdbx_db_accession Q27Q69 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ENDLLALDKWNSLWSWFDITKWLWYIK _struct_ref.pdbx_align_begin 671 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ME4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 27 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q27Q69 _struct_ref_seq.db_align_beg 671 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 697 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 657 _struct_ref_seq.pdbx_auth_seq_align_end 683 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2ME4 _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 2 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q27Q69 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 672 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 658 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 6 ? ASN A 11 ? ALA A 662 ASN A 667 1 ? 6 HELX_P HELX_P2 2 SER A 12 ? PHE A 17 ? SER A 668 PHE A 673 1 ? 6 HELX_P HELX_P3 3 ILE A 19 ? TRP A 24 ? ILE A 675 TRP A 680 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 O A ILE 675 ? ? H A TRP 678 ? ? 1.60 2 3 O A ILE 675 ? ? H A TRP 678 ? ? 1.59 3 4 O A ILE 675 ? ? H A TRP 678 ? ? 1.59 4 5 O A ILE 675 ? ? H A TRP 678 ? ? 1.59 5 8 O A ILE 675 ? ? H A TRP 678 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 662 ? ? -60.18 90.43 2 1 PHE A 673 ? ? -97.41 42.71 3 1 ILE A 682 ? ? -108.28 -69.15 4 2 ALA A 662 ? ? -60.43 90.91 5 2 PHE A 673 ? ? -97.25 42.68 6 2 ILE A 682 ? ? -106.70 -68.69 7 3 ALA A 662 ? ? -60.23 90.61 8 3 PHE A 673 ? ? -97.51 42.87 9 3 ILE A 682 ? ? -109.96 -67.53 10 4 ALA A 662 ? ? -59.98 92.38 11 4 PHE A 673 ? ? -97.54 42.66 12 4 ILE A 682 ? ? -108.74 -69.91 13 5 LYS A 658 ? ? -109.03 74.13 14 5 ALA A 662 ? ? -63.17 88.34 15 5 PHE A 673 ? ? -97.52 42.57 16 5 ILE A 682 ? ? -109.34 -68.57 17 6 ALA A 662 ? ? -61.34 88.28 18 6 PHE A 673 ? ? -97.38 42.73 19 6 ILE A 682 ? ? -108.62 -69.48 20 7 LYS A 658 ? ? -164.00 116.20 21 7 ALA A 662 ? ? -60.65 89.90 22 7 PHE A 673 ? ? -97.31 42.71 23 8 LYS A 658 ? ? 52.91 80.89 24 8 ALA A 662 ? ? -60.46 91.04 25 8 PHE A 673 ? ? -97.36 42.74 26 8 ILE A 682 ? ? -108.12 -69.55 27 9 ALA A 662 ? ? -60.33 90.95 28 9 PHE A 673 ? ? -97.26 42.94 29 9 ILE A 682 ? ? -96.30 -67.88 30 10 ALA A 662 ? ? -62.22 88.00 31 10 PHE A 673 ? ? -97.35 42.88 32 10 ILE A 682 ? ? -109.00 -70.18 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2ME4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 2.4 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.33 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2ME4 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1 mM MPER-PB7, 100 mM [U-100% 2H] DPC, 100% D2O' 3 '100% D2O' '1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC, 20 mg/mL DNA nanotube, 90% H2O/10% D2O' 4 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id MPER-PB7-1 1 ? mM '[U-100% 13C; U-100% 15N]' 1 DPC-2 100 ? mM '[U-100% 2H]' 1 MPER-PB7-3 1 ? mM '[U-100% 15N]' 2 DPC-4 100 ? mM '[U-100% 2H]' 2 MPER-PB7-5 1 ? mM ? 3 DPC-6 100 ? mM '[U-100% 2H]' 3 MPER-PB7-7 1 ? mM '[U-100% 13C; U-100% 15N]' 4 DPC-8 100 ? mM '[U-100% 2H]' 4 'DNA nanotube-9' 20 ? mg/mL ? 4 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pH 6.6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D HNCO,HNCA,HN(CA)CB,HN(COCA)CB,HN(CO)CA,HN(CA)CO' 1 2 1 '3D C(CO)NH,H(CCO)NH,HCCH-TOCSY' 1 3 1 '3D 1H-13C NOESY' 1 4 2 '3D 1H-15N NOESY' 1 5 2 '3D HNHA' 1 6 3 '2D 1H-1H NOESY,TOCSY' 1 7 4 'Q-J RDC' # _pdbx_nmr_details.text 'MODELS SUPERIMPOSED FROM RESIDUE 666 TO RESIDUE 672.' _pdbx_nmr_details.entry_id 2ME4 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2ME4 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 430 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 175 _pdbx_nmr_constraints.NOE_long_range_total_count 4 _pdbx_nmr_constraints.NOE_medium_range_total_count 111 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 140 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 25 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 21 # _pdbx_nmr_refine.entry_id 2ME4 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Structure models were calculated using TENSO module incorporating RDC restraints during the high temperature torsion angle dynamics annealing stage, and planeDisPot module incorporating EPR depth restraints during the subsequent low temperature Cartesian coordinate dynamics annealing stage. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 9 1 'Rochus Keller' 'data analysis' CARA 1.8.4 2 'Rochus Keller' 'chemical shift assignment' CARA 1.8.4 3 'Rochus Keller' 'peak picking' CARA 1.8.4 4 'Shen, Cornilescu, Delaglio and Bax' 'data analysis' TALOS + 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0c 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' 2.28 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 ILE N N N N 66 ILE CA C N S 67 ILE C C N N 68 ILE O O N N 69 ILE CB C N S 70 ILE CG1 C N N 71 ILE CG2 C N N 72 ILE CD1 C N N 73 ILE OXT O N N 74 ILE H H N N 75 ILE H2 H N N 76 ILE HA H N N 77 ILE HB H N N 78 ILE HG12 H N N 79 ILE HG13 H N N 80 ILE HG21 H N N 81 ILE HG22 H N N 82 ILE HG23 H N N 83 ILE HD11 H N N 84 ILE HD12 H N N 85 ILE HD13 H N N 86 ILE HXT H N N 87 LEU N N N N 88 LEU CA C N S 89 LEU C C N N 90 LEU O O N N 91 LEU CB C N N 92 LEU CG C N N 93 LEU CD1 C N N 94 LEU CD2 C N N 95 LEU OXT O N N 96 LEU H H N N 97 LEU H2 H N N 98 LEU HA H N N 99 LEU HB2 H N N 100 LEU HB3 H N N 101 LEU HG H N N 102 LEU HD11 H N N 103 LEU HD12 H N N 104 LEU HD13 H N N 105 LEU HD21 H N N 106 LEU HD22 H N N 107 LEU HD23 H N N 108 LEU HXT H N N 109 LYS N N N N 110 LYS CA C N S 111 LYS C C N N 112 LYS O O N N 113 LYS CB C N N 114 LYS CG C N N 115 LYS CD C N N 116 LYS CE C N N 117 LYS NZ N N N 118 LYS OXT O N N 119 LYS H H N N 120 LYS H2 H N N 121 LYS HA H N N 122 LYS HB2 H N N 123 LYS HB3 H N N 124 LYS HG2 H N N 125 LYS HG3 H N N 126 LYS HD2 H N N 127 LYS HD3 H N N 128 LYS HE2 H N N 129 LYS HE3 H N N 130 LYS HZ1 H N N 131 LYS HZ2 H N N 132 LYS HZ3 H N N 133 LYS HXT H N N 134 PHE N N N N 135 PHE CA C N S 136 PHE C C N N 137 PHE O O N N 138 PHE CB C N N 139 PHE CG C Y N 140 PHE CD1 C Y N 141 PHE CD2 C Y N 142 PHE CE1 C Y N 143 PHE CE2 C Y N 144 PHE CZ C Y N 145 PHE OXT O N N 146 PHE H H N N 147 PHE H2 H N N 148 PHE HA H N N 149 PHE HB2 H N N 150 PHE HB3 H N N 151 PHE HD1 H N N 152 PHE HD2 H N N 153 PHE HE1 H N N 154 PHE HE2 H N N 155 PHE HZ H N N 156 PHE HXT H N N 157 SER N N N N 158 SER CA C N S 159 SER C C N N 160 SER O O N N 161 SER CB C N N 162 SER OG O N N 163 SER OXT O N N 164 SER H H N N 165 SER H2 H N N 166 SER HA H N N 167 SER HB2 H N N 168 SER HB3 H N N 169 SER HG H N N 170 SER HXT H N N 171 THR N N N N 172 THR CA C N S 173 THR C C N N 174 THR O O N N 175 THR CB C N R 176 THR OG1 O N N 177 THR CG2 C N N 178 THR OXT O N N 179 THR H H N N 180 THR H2 H N N 181 THR HA H N N 182 THR HB H N N 183 THR HG1 H N N 184 THR HG21 H N N 185 THR HG22 H N N 186 THR HG23 H N N 187 THR HXT H N N 188 TRP N N N N 189 TRP CA C N S 190 TRP C C N N 191 TRP O O N N 192 TRP CB C N N 193 TRP CG C Y N 194 TRP CD1 C Y N 195 TRP CD2 C Y N 196 TRP NE1 N Y N 197 TRP CE2 C Y N 198 TRP CE3 C Y N 199 TRP CZ2 C Y N 200 TRP CZ3 C Y N 201 TRP CH2 C Y N 202 TRP OXT O N N 203 TRP H H N N 204 TRP H2 H N N 205 TRP HA H N N 206 TRP HB2 H N N 207 TRP HB3 H N N 208 TRP HD1 H N N 209 TRP HE1 H N N 210 TRP HE3 H N N 211 TRP HZ2 H N N 212 TRP HZ3 H N N 213 TRP HH2 H N N 214 TRP HXT H N N 215 TYR N N N N 216 TYR CA C N S 217 TYR C C N N 218 TYR O O N N 219 TYR CB C N N 220 TYR CG C Y N 221 TYR CD1 C Y N 222 TYR CD2 C Y N 223 TYR CE1 C Y N 224 TYR CE2 C Y N 225 TYR CZ C Y N 226 TYR OH O N N 227 TYR OXT O N N 228 TYR H H N N 229 TYR H2 H N N 230 TYR HA H N N 231 TYR HB2 H N N 232 TYR HB3 H N N 233 TYR HD1 H N N 234 TYR HD2 H N N 235 TYR HE1 H N N 236 TYR HE2 H N N 237 TYR HH H N N 238 TYR HXT H N N 239 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 ILE N CA sing N N 62 ILE N H sing N N 63 ILE N H2 sing N N 64 ILE CA C sing N N 65 ILE CA CB sing N N 66 ILE CA HA sing N N 67 ILE C O doub N N 68 ILE C OXT sing N N 69 ILE CB CG1 sing N N 70 ILE CB CG2 sing N N 71 ILE CB HB sing N N 72 ILE CG1 CD1 sing N N 73 ILE CG1 HG12 sing N N 74 ILE CG1 HG13 sing N N 75 ILE CG2 HG21 sing N N 76 ILE CG2 HG22 sing N N 77 ILE CG2 HG23 sing N N 78 ILE CD1 HD11 sing N N 79 ILE CD1 HD12 sing N N 80 ILE CD1 HD13 sing N N 81 ILE OXT HXT sing N N 82 LEU N CA sing N N 83 LEU N H sing N N 84 LEU N H2 sing N N 85 LEU CA C sing N N 86 LEU CA CB sing N N 87 LEU CA HA sing N N 88 LEU C O doub N N 89 LEU C OXT sing N N 90 LEU CB CG sing N N 91 LEU CB HB2 sing N N 92 LEU CB HB3 sing N N 93 LEU CG CD1 sing N N 94 LEU CG CD2 sing N N 95 LEU CG HG sing N N 96 LEU CD1 HD11 sing N N 97 LEU CD1 HD12 sing N N 98 LEU CD1 HD13 sing N N 99 LEU CD2 HD21 sing N N 100 LEU CD2 HD22 sing N N 101 LEU CD2 HD23 sing N N 102 LEU OXT HXT sing N N 103 LYS N CA sing N N 104 LYS N H sing N N 105 LYS N H2 sing N N 106 LYS CA C sing N N 107 LYS CA CB sing N N 108 LYS CA HA sing N N 109 LYS C O doub N N 110 LYS C OXT sing N N 111 LYS CB CG sing N N 112 LYS CB HB2 sing N N 113 LYS CB HB3 sing N N 114 LYS CG CD sing N N 115 LYS CG HG2 sing N N 116 LYS CG HG3 sing N N 117 LYS CD CE sing N N 118 LYS CD HD2 sing N N 119 LYS CD HD3 sing N N 120 LYS CE NZ sing N N 121 LYS CE HE2 sing N N 122 LYS CE HE3 sing N N 123 LYS NZ HZ1 sing N N 124 LYS NZ HZ2 sing N N 125 LYS NZ HZ3 sing N N 126 LYS OXT HXT sing N N 127 PHE N CA sing N N 128 PHE N H sing N N 129 PHE N H2 sing N N 130 PHE CA C sing N N 131 PHE CA CB sing N N 132 PHE CA HA sing N N 133 PHE C O doub N N 134 PHE C OXT sing N N 135 PHE CB CG sing N N 136 PHE CB HB2 sing N N 137 PHE CB HB3 sing N N 138 PHE CG CD1 doub Y N 139 PHE CG CD2 sing Y N 140 PHE CD1 CE1 sing Y N 141 PHE CD1 HD1 sing N N 142 PHE CD2 CE2 doub Y N 143 PHE CD2 HD2 sing N N 144 PHE CE1 CZ doub Y N 145 PHE CE1 HE1 sing N N 146 PHE CE2 CZ sing Y N 147 PHE CE2 HE2 sing N N 148 PHE CZ HZ sing N N 149 PHE OXT HXT sing N N 150 SER N CA sing N N 151 SER N H sing N N 152 SER N H2 sing N N 153 SER CA C sing N N 154 SER CA CB sing N N 155 SER CA HA sing N N 156 SER C O doub N N 157 SER C OXT sing N N 158 SER CB OG sing N N 159 SER CB HB2 sing N N 160 SER CB HB3 sing N N 161 SER OG HG sing N N 162 SER OXT HXT sing N N 163 THR N CA sing N N 164 THR N H sing N N 165 THR N H2 sing N N 166 THR CA C sing N N 167 THR CA CB sing N N 168 THR CA HA sing N N 169 THR C O doub N N 170 THR C OXT sing N N 171 THR CB OG1 sing N N 172 THR CB CG2 sing N N 173 THR CB HB sing N N 174 THR OG1 HG1 sing N N 175 THR CG2 HG21 sing N N 176 THR CG2 HG22 sing N N 177 THR CG2 HG23 sing N N 178 THR OXT HXT sing N N 179 TRP N CA sing N N 180 TRP N H sing N N 181 TRP N H2 sing N N 182 TRP CA C sing N N 183 TRP CA CB sing N N 184 TRP CA HA sing N N 185 TRP C O doub N N 186 TRP C OXT sing N N 187 TRP CB CG sing N N 188 TRP CB HB2 sing N N 189 TRP CB HB3 sing N N 190 TRP CG CD1 doub Y N 191 TRP CG CD2 sing Y N 192 TRP CD1 NE1 sing Y N 193 TRP CD1 HD1 sing N N 194 TRP CD2 CE2 doub Y N 195 TRP CD2 CE3 sing Y N 196 TRP NE1 CE2 sing Y N 197 TRP NE1 HE1 sing N N 198 TRP CE2 CZ2 sing Y N 199 TRP CE3 CZ3 doub Y N 200 TRP CE3 HE3 sing N N 201 TRP CZ2 CH2 doub Y N 202 TRP CZ2 HZ2 sing N N 203 TRP CZ3 CH2 sing Y N 204 TRP CZ3 HZ3 sing N N 205 TRP CH2 HH2 sing N N 206 TRP OXT HXT sing N N 207 TYR N CA sing N N 208 TYR N H sing N N 209 TYR N H2 sing N N 210 TYR CA C sing N N 211 TYR CA CB sing N N 212 TYR CA HA sing N N 213 TYR C O doub N N 214 TYR C OXT sing N N 215 TYR CB CG sing N N 216 TYR CB HB2 sing N N 217 TYR CB HB3 sing N N 218 TYR CG CD1 doub Y N 219 TYR CG CD2 sing Y N 220 TYR CD1 CE1 sing Y N 221 TYR CD1 HD1 sing N N 222 TYR CD2 CE2 doub Y N 223 TYR CD2 HD2 sing N N 224 TYR CE1 CZ doub Y N 225 TYR CE1 HE1 sing N N 226 TYR CE2 CZ sing Y N 227 TYR CE2 HE2 sing N N 228 TYR CZ OH sing N N 229 TYR OH HH sing N N 230 TYR OXT HXT sing N N 231 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 750 Bruker AVANCE 2 'Bruker Avance' 600 Bruker AVANCE 3 'Bruker Avance' 600 Varian INOVA 4 'Varian INOVA' # _atom_sites.entry_id 2ME4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_