data_2MKN # _entry.id 2MKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2MKN RCSB RCSB103728 BMRB 17679 WWPDB D_1000103728 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 2MKD PDB unspecified 'HADDOCK starting structure' 17679 BMRB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MKN _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-02-10 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wright, P.' 1 'Dyson, J.' 2 'Burge, R.' 3 'Martinez-Yamout, M.' 4 # _citation.id primary _citation.title 'Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids.' _citation.journal_abbrev Biochemistry _citation.journal_volume 53 _citation.page_first 1495 _citation.page_last 1510 _citation.year 2014 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24521053 _citation.pdbx_database_id_DOI 10.1021/bi401675h # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Burge, R.G.' 1 primary 'Martinez-Yamout, M.A.' 2 primary 'Dyson, H.J.' 3 primary 'Wright, P.E.' 4 # _cell.entry_id 2MKN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MKN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Zinc finger protein 346' 7030.144 1 ? ? 'UNP residues 181-224' ? 2 polymer syn ;RNA (5'-R(*GP*CP*CP*GP*UP*GP*GP*UP*CP*UP*GP*GP*UP*GP*GP*CP*CP*GP*G)-3') ; 6157.673 1 ? ? ? ? 3 polymer syn ;RNA (5'-R(P*CP*CP*GP*GP*CP*CP*AP*CP*CP*AP*GP*AP*CP*CP*AP*CP*GP*GP*C)-3') ; 6049.712 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no STKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLAD STKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLAD A ? 2 polyribonucleotide no no GCCGUGGUCUGGUGGCCGG GCCGUGGUCUGGUGGCCGG B ? 3 polyribonucleotide no no CCGGCCACCAGACCACGGC CCGGCCACCAGACCACGGC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 LYS n 1 4 VAL n 1 5 GLU n 1 6 ALA n 1 7 LEU n 1 8 HIS n 1 9 GLN n 1 10 ASN n 1 11 ARG n 1 12 GLU n 1 13 MET n 1 14 ILE n 1 15 ASP n 1 16 PRO n 1 17 ASP n 1 18 LYS n 1 19 PHE n 1 20 CYS n 1 21 SER n 1 22 LEU n 1 23 CYS n 1 24 HIS n 1 25 ALA n 1 26 THR n 1 27 PHE n 1 28 ASN n 1 29 ASP n 1 30 PRO n 1 31 VAL n 1 32 MET n 1 33 ALA n 1 34 GLN n 1 35 GLN n 1 36 HIS n 1 37 TYR n 1 38 VAL n 1 39 GLY n 1 40 LYS n 1 41 LYS n 1 42 HIS n 1 43 ARG n 1 44 LYS n 1 45 GLN n 1 46 GLU n 1 47 THR n 1 48 LYS n 1 49 LEU n 1 50 LYS n 1 51 LEU n 1 52 MET n 1 53 ALA n 1 54 ARG n 1 55 TYR n 1 56 GLY n 1 57 ARG n 1 58 LEU n 1 59 ALA n 1 60 ASP n 2 1 G n 2 2 C n 2 3 C n 2 4 G n 2 5 U n 2 6 G n 2 7 G n 2 8 U n 2 9 C n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 G n 2 16 C n 2 17 C n 2 18 G n 2 19 G n 3 1 C n 3 2 C n 3 3 G n 3 4 G n 3 5 C n 3 6 C n 3 7 A n 3 8 C n 3 9 C n 3 10 A n 3 11 G n 3 12 A n 3 13 C n 3 14 C n 3 15 A n 3 16 C n 3 17 G n 3 18 G n 3 19 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ZNF346, JAZ' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pet21A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ZN346_HUMAN Q9UL40 1 STKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLAD 168 ? 2 PDB 2MKN 2MKN 2 GCCGUGGUCUGGUGGCCGG 1 ? 3 PDB 2MKN 2MKN 3 CCGGCCACCAGACCACGGC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MKN A 1 ? 60 ? Q9UL40 168 ? 227 ? 168 227 2 2 2MKN B 1 ? 19 ? 2MKN 1 ? 19 ? 1 19 3 3 2MKN C 1 ? 19 ? 2MKN 20 ? 38 ? 20 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D 1H-15N NOESY' 1 3 1 '3D HNCA' 1 4 1 '3D HNCO' 1 5 1 '3D HNCACB' 1 6 1 '3D 1H-15N TOCSY' 1 7 1 '3D 1H-13C NOESY' 1 8 1 '3D HCCH-COSY' 1 9 1 '3D HCCH-TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 55 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '200-300 mM [U-95% 13C; U-95% 15N] protein, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 750 Bruker DMX 1 'Bruker DMX' 600 Bruker DRX 2 'Bruker DRX' 800 Bruker Avance 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MKN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'HADDOCK MODEL OF JAZ ZINC FINGER 3 COMPLEXED WITH DSRNA.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MKN _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MKN _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement AMBER ? 1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 2 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView ? 3 'Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS ? 4 'Alexandre Bonvin' refinement HADDOCK ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MKN _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MKN _struct.title 'Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and dsRNA' _struct.pdbx_descriptor 'Zinc finger protein 346' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MKN _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Zinc finger, dsRNA-binding, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 29 ? VAL A 38 ? ASP A 196 VAL A 205 1 ? 10 HELX_P HELX_P2 2 GLY A 39 ? GLY A 56 ? GLY A 206 GLY A 223 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 42 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 209 A ZN 301 1_555 ? ? ? ? ? ? ? 1.783 ? metalc2 metalc ? ? A HIS 36 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 203 A ZN 301 1_555 ? ? ? ? ? ? ? 1.794 ? metalc3 metalc ? ? A CYS 20 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 187 A ZN 301 1_555 ? ? ? ? ? ? ? 2.033 ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 C C 19 N3 ? ? B G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 C C 19 O2 ? ? B G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 C C 19 N4 ? ? B G 1 C C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 C G 18 N1 ? ? B C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 C G 18 O6 ? ? B C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 C G 18 N2 ? ? B C 2 C G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B C 3 N3 ? ? ? 1_555 C G 17 N1 ? ? B C 3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B C 3 N4 ? ? ? 1_555 C G 17 O6 ? ? B C 3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B C 3 O2 ? ? ? 1_555 C G 17 N2 ? ? B C 3 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B G 4 N1 ? ? ? 1_555 C C 16 N3 ? ? B G 4 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B G 4 N2 ? ? ? 1_555 C C 16 O2 ? ? B G 4 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B G 4 O6 ? ? ? 1_555 C C 16 N4 ? ? B G 4 C C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B U 5 N3 ? ? ? 1_555 C A 15 N1 ? ? B U 5 C A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B U 5 O4 ? ? ? 1_555 C A 15 N6 ? ? B U 5 C A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B G 6 N1 ? ? ? 1_555 C C 14 N3 ? ? B G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B G 6 N2 ? ? ? 1_555 C C 14 O2 ? ? B G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B G 6 O6 ? ? ? 1_555 C C 14 N4 ? ? B G 6 C C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B G 7 N1 ? ? ? 1_555 C C 13 N3 ? ? B G 7 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B G 7 N2 ? ? ? 1_555 C C 13 O2 ? ? B G 7 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B G 7 O6 ? ? ? 1_555 C C 13 N4 ? ? B G 7 C C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B U 8 N3 ? ? ? 1_555 C A 12 N1 ? ? B U 8 C A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B U 8 O4 ? ? ? 1_555 C A 12 N6 ? ? B U 8 C A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B C 9 N3 ? ? ? 1_555 C G 11 N1 ? ? B C 9 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B C 9 N4 ? ? ? 1_555 C G 11 O6 ? ? B C 9 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B C 9 O2 ? ? ? 1_555 C G 11 N2 ? ? B C 9 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B U 10 N3 ? ? ? 1_555 C A 10 N1 ? ? B U 10 C A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B U 10 O4 ? ? ? 1_555 C A 10 N6 ? ? B U 10 C A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B G 11 N1 ? ? ? 1_555 C C 9 N3 ? ? B G 11 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B G 11 N2 ? ? ? 1_555 C C 9 O2 ? ? B G 11 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B G 11 O6 ? ? ? 1_555 C C 9 N4 ? ? B G 11 C C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B G 12 N1 ? ? ? 1_555 C C 8 N3 ? ? B G 12 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B G 12 N2 ? ? ? 1_555 C C 8 O2 ? ? B G 12 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B G 12 O6 ? ? ? 1_555 C C 8 N4 ? ? B G 12 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? B U 13 N3 ? ? ? 1_555 C A 7 N1 ? ? B U 13 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? B U 13 O4 ? ? ? 1_555 C A 7 N6 ? ? B U 13 C A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? B G 14 N1 ? ? ? 1_555 C C 6 N3 ? ? B G 14 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? B G 14 N2 ? ? ? 1_555 C C 6 O2 ? ? B G 14 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? B G 14 O6 ? ? ? 1_555 C C 6 N4 ? ? B G 14 C C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? B G 15 N1 ? ? ? 1_555 C C 5 N3 ? ? B G 15 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? B G 15 N2 ? ? ? 1_555 C C 5 O2 ? ? B G 15 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? B G 15 O6 ? ? ? 1_555 C C 5 N4 ? ? B G 15 C C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? B C 16 N3 ? ? ? 1_555 C G 4 N1 ? ? B C 16 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? B C 16 N4 ? ? ? 1_555 C G 4 O6 ? ? B C 16 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? B C 16 O2 ? ? ? 1_555 C G 4 N2 ? ? B C 16 C G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? B C 17 N3 ? ? ? 1_555 C G 3 N1 ? ? B C 17 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? B C 17 N4 ? ? ? 1_555 C G 3 O6 ? ? B C 17 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? B C 17 O2 ? ? ? 1_555 C G 3 N2 ? ? B C 17 C G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? B G 18 N1 ? ? ? 1_555 C C 2 N3 ? ? B G 18 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? B G 18 N2 ? ? ? 1_555 C C 2 O2 ? ? B G 18 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? B G 18 O6 ? ? ? 1_555 C C 2 N4 ? ? B G 18 C C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? B G 19 N1 ? ? ? 1_555 C C 1 N3 ? ? B G 19 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? B G 19 N2 ? ? ? 1_555 C C 1 O2 ? ? B G 19 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? B G 19 O6 ? ? ? 1_555 C C 1 N4 ? ? B G 19 C C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 18 ? PHE A 19 ? LYS A 185 PHE A 186 A 2 THR A 26 ? PHE A 27 ? THR A 193 PHE A 194 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 18 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 185 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id PHE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 27 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 194 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 20 ? CYS A 187 . ? 1_555 ? 2 AC1 4 CYS A 23 ? CYS A 190 . ? 1_555 ? 3 AC1 4 HIS A 36 ? HIS A 203 . ? 1_555 ? 4 AC1 4 HIS A 42 ? HIS A 209 . ? 1_555 ? # _atom_sites.entry_id 2MKN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 168 ? ? ? A . n A 1 2 THR 2 169 ? ? ? A . n A 1 3 LYS 3 170 ? ? ? A . n A 1 4 VAL 4 171 ? ? ? A . n A 1 5 GLU 5 172 ? ? ? A . n A 1 6 ALA 6 173 ? ? ? A . n A 1 7 LEU 7 174 ? ? ? A . n A 1 8 HIS 8 175 ? ? ? A . n A 1 9 GLN 9 176 ? ? ? A . n A 1 10 ASN 10 177 ? ? ? A . n A 1 11 ARG 11 178 ? ? ? A . n A 1 12 GLU 12 179 ? ? ? A . n A 1 13 MET 13 180 ? ? ? A . n A 1 14 ILE 14 181 181 ILE ILE A . n A 1 15 ASP 15 182 182 ASP ASP A . n A 1 16 PRO 16 183 183 PRO PRO A . n A 1 17 ASP 17 184 184 ASP ASP A . n A 1 18 LYS 18 185 185 LYS LYS A . n A 1 19 PHE 19 186 186 PHE PHE A . n A 1 20 CYS 20 187 187 CYS CYS A . n A 1 21 SER 21 188 188 SER SER A . n A 1 22 LEU 22 189 189 LEU LEU A . n A 1 23 CYS 23 190 190 CYS CYS A . n A 1 24 HIS 24 191 191 HIS HIS A . n A 1 25 ALA 25 192 192 ALA ALA A . n A 1 26 THR 26 193 193 THR THR A . n A 1 27 PHE 27 194 194 PHE PHE A . n A 1 28 ASN 28 195 195 ASN ASN A . n A 1 29 ASP 29 196 196 ASP ASP A . n A 1 30 PRO 30 197 197 PRO PRO A . n A 1 31 VAL 31 198 198 VAL VAL A . n A 1 32 MET 32 199 199 MET MET A . n A 1 33 ALA 33 200 200 ALA ALA A . n A 1 34 GLN 34 201 201 GLN GLN A . n A 1 35 GLN 35 202 202 GLN GLN A . n A 1 36 HIS 36 203 203 HIS HIS A . n A 1 37 TYR 37 204 204 TYR TYR A . n A 1 38 VAL 38 205 205 VAL VAL A . n A 1 39 GLY 39 206 206 GLY GLY A . n A 1 40 LYS 40 207 207 LYS LYS A . n A 1 41 LYS 41 208 208 LYS LYS A . n A 1 42 HIS 42 209 209 HIS HIS A . n A 1 43 ARG 43 210 210 ARG ARG A . n A 1 44 LYS 44 211 211 LYS LYS A . n A 1 45 GLN 45 212 212 GLN GLN A . n A 1 46 GLU 46 213 213 GLU GLU A . n A 1 47 THR 47 214 214 THR THR A . n A 1 48 LYS 48 215 215 LYS LYS A . n A 1 49 LEU 49 216 216 LEU LEU A . n A 1 50 LYS 50 217 217 LYS LYS A . n A 1 51 LEU 51 218 218 LEU LEU A . n A 1 52 MET 52 219 219 MET MET A . n A 1 53 ALA 53 220 220 ALA ALA A . n A 1 54 ARG 54 221 221 ARG ARG A . n A 1 55 TYR 55 222 222 TYR TYR A . n A 1 56 GLY 56 223 223 GLY GLY A . n A 1 57 ARG 57 224 224 ARG ARG A . n A 1 58 LEU 58 225 ? ? ? A . n A 1 59 ALA 59 226 ? ? ? A . n A 1 60 ASP 60 227 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 C 2 2 2 C C B . n B 2 3 C 3 3 3 C C B . n B 2 4 G 4 4 4 G G B . n B 2 5 U 5 5 5 U U B . n B 2 6 G 6 6 6 G G B . n B 2 7 G 7 7 7 G G B . n B 2 8 U 8 8 8 U U B . n B 2 9 C 9 9 9 C C B . n B 2 10 U 10 10 10 U U B . n B 2 11 G 11 11 11 G G B . n B 2 12 G 12 12 12 G G B . n B 2 13 U 13 13 13 U U B . n B 2 14 G 14 14 14 G G B . n B 2 15 G 15 15 15 G G B . n B 2 16 C 16 16 16 C C B . n B 2 17 C 17 17 17 C C B . n B 2 18 G 18 18 18 G G B . n B 2 19 G 19 19 19 G G B . n C 3 1 C 1 20 20 C C C . n C 3 2 C 2 21 21 C C C . n C 3 3 G 3 22 22 G G C . n C 3 4 G 4 23 23 G G C . n C 3 5 C 5 24 24 C C C . n C 3 6 C 6 25 25 C C C . n C 3 7 A 7 26 26 A A C . n C 3 8 C 8 27 27 C C C . n C 3 9 C 9 28 28 C C C . n C 3 10 A 10 29 29 A A C . n C 3 11 G 11 30 30 G G C . n C 3 12 A 12 31 31 A A C . n C 3 13 C 13 32 32 C C C . n C 3 14 C 14 33 33 C C C . n C 3 15 A 15 34 34 A A C . n C 3 16 C 16 35 35 C C C . n C 3 17 G 17 36 36 G G C . n C 3 18 G 18 37 37 G G C . n C 3 19 C 19 38 38 C C C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 225 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 42 ? A HIS 209 ? 1_555 ZN ? D ZN . ? A ZN 301 ? 1_555 NE2 ? A HIS 36 ? A HIS 203 ? 1_555 117.3 ? 2 ND1 ? A HIS 42 ? A HIS 209 ? 1_555 ZN ? D ZN . ? A ZN 301 ? 1_555 SG ? A CYS 20 ? A CYS 187 ? 1_555 101.8 ? 3 NE2 ? A HIS 36 ? A HIS 203 ? 1_555 ZN ? D ZN . ? A ZN 301 ? 1_555 SG ? A CYS 20 ? A CYS 187 ? 1_555 107.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-19 2 'Structure model' 1 1 2014-03-26 3 'Structure model' 1 2 2016-04-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' # _pdbx_entry_details.entry_id 2MKN _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'THE HADDOCK STARTING RNA STRUCTURE IS AN IDEALIZED A-FORM HELIX AND WAS GENERATED FROM THE MAKE-NA SERVER.' _pdbx_entry_details.source_details ? # _pdbx_nmr_exptl_sample.component entity_1-1 _pdbx_nmr_exptl_sample.concentration ? _pdbx_nmr_exptl_sample.concentration_range 200-300 _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-95% 13C; U-95% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 209 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 179.80 _pdbx_validate_torsion.psi -48.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 168 ? A SER 1 2 1 Y 1 A THR 169 ? A THR 2 3 1 Y 1 A LYS 170 ? A LYS 3 4 1 Y 1 A VAL 171 ? A VAL 4 5 1 Y 1 A GLU 172 ? A GLU 5 6 1 Y 1 A ALA 173 ? A ALA 6 7 1 Y 1 A LEU 174 ? A LEU 7 8 1 Y 1 A HIS 175 ? A HIS 8 9 1 Y 1 A GLN 176 ? A GLN 9 10 1 Y 1 A ASN 177 ? A ASN 10 11 1 Y 1 A ARG 178 ? A ARG 11 12 1 Y 1 A GLU 179 ? A GLU 12 13 1 Y 1 A MET 180 ? A MET 13 14 1 Y 1 A LEU 225 ? A LEU 58 15 1 Y 1 A ALA 226 ? A ALA 59 16 1 Y 1 A ASP 227 ? A ASP 60 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MKN 'double helix' 2MKN 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 C C 19 1_555 -0.293 -0.102 0.278 6.067 7.141 -2.974 1 B_G1:C38_C B 1 ? C 38 ? 19 1 1 B C 2 1_555 C G 18 1_555 0.312 -0.147 -0.307 1.966 -4.430 -3.193 2 B_C2:G37_C B 2 ? C 37 ? 19 1 1 B C 3 1_555 C G 17 1_555 0.151 -0.025 0.031 -0.002 -5.114 -1.695 3 B_C3:G36_C B 3 ? C 36 ? 19 1 1 B G 4 1_555 C C 16 1_555 -0.188 -0.203 -0.648 -0.737 0.037 -2.995 4 B_G4:C35_C B 4 ? C 35 ? 19 1 1 B U 5 1_555 C A 15 1_555 0.019 -0.046 -0.427 18.537 11.978 -8.024 5 B_U5:A34_C B 5 ? C 34 ? 20 1 1 B G 6 1_555 C C 14 1_555 -0.191 -0.106 -0.340 0.238 3.564 -1.535 6 B_G6:C33_C B 6 ? C 33 ? 19 1 1 B G 7 1_555 C C 13 1_555 -0.443 -0.144 -0.091 8.328 17.500 -0.713 7 B_G7:C32_C B 7 ? C 32 ? 19 1 1 B U 8 1_555 C A 12 1_555 -0.010 0.028 -0.455 2.515 7.782 -10.713 8 B_U8:A31_C B 8 ? C 31 ? 20 1 1 B C 9 1_555 C G 11 1_555 0.177 -0.160 -0.317 -0.235 -3.680 -3.776 9 B_C9:G30_C B 9 ? C 30 ? 19 1 1 B U 10 1_555 C A 10 1_555 0.054 -0.069 -0.298 -8.124 4.051 -2.253 10 B_U10:A29_C B 10 ? C 29 ? 20 1 1 B G 11 1_555 C C 9 1_555 -0.200 -0.104 -0.290 -5.246 3.046 -0.958 11 B_G11:C28_C B 11 ? C 28 ? 19 1 1 B G 12 1_555 C C 8 1_555 -0.066 -0.132 -0.476 -16.843 11.393 -5.495 12 B_G12:C27_C B 12 ? C 27 ? 19 1 1 B U 13 1_555 C A 7 1_555 -0.006 -0.010 -0.183 -11.643 9.530 -7.910 13 B_U13:A26_C B 13 ? C 26 ? 20 1 1 B G 14 1_555 C C 6 1_555 -0.029 -0.082 -0.070 -5.582 7.412 -2.208 14 B_G14:C25_C B 14 ? C 25 ? 19 1 1 B G 15 1_555 C C 5 1_555 -0.373 -0.199 -0.478 14.595 -3.146 0.205 15 B_G15:C24_C B 15 ? C 24 ? 19 1 1 B C 16 1_555 C G 4 1_555 0.295 -0.239 0.062 -7.290 31.792 -0.882 16 B_C16:G23_C B 16 ? C 23 ? 19 1 1 B C 17 1_555 C G 3 1_555 0.164 -0.044 0.041 -16.564 1.195 -0.780 17 B_C17:G22_C B 17 ? C 22 ? 19 1 1 B G 18 1_555 C C 2 1_555 -0.310 -0.064 0.112 -0.321 2.117 -3.278 18 B_G18:C21_C B 18 ? C 21 ? 19 1 1 B G 19 1_555 C C 1 1_555 0.010 -0.100 -0.055 4.224 -3.152 -5.266 19 B_G19:C20_C B 19 ? C 20 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 C C 19 1_555 B C 2 1_555 C G 18 1_555 -0.087 -1.206 3.664 4.303 5.405 33.153 -3.022 0.906 3.393 9.347 -7.440 33.845 1 BB_G1C2:G37C38_CC B 1 ? C 38 ? B 2 ? C 37 ? 1 B C 2 1_555 C G 18 1_555 B C 3 1_555 C G 17 1_555 0.470 -1.598 3.469 -2.054 5.185 33.839 -3.542 -1.127 3.164 8.833 3.499 34.282 2 BB_C2C3:G36G37_CC B 2 ? C 37 ? B 3 ? C 36 ? 1 B C 3 1_555 C G 17 1_555 B G 4 1_555 C C 16 1_555 -0.427 -1.011 3.352 3.745 20.558 31.883 -4.017 1.105 2.256 33.329 -6.072 37.971 3 BB_C3G4:C35G36_CC B 3 ? C 36 ? B 4 ? C 35 ? 1 B G 4 1_555 C C 16 1_555 B U 5 1_555 C A 15 1_555 -0.215 -1.075 3.383 -0.316 2.241 28.302 -2.718 0.364 3.292 4.574 0.645 28.390 4 BB_G4U5:A34C35_CC B 4 ? C 35 ? B 5 ? C 34 ? 1 B U 5 1_555 C A 15 1_555 B G 6 1_555 C C 14 1_555 1.099 -1.442 3.966 0.998 23.178 33.141 -4.970 -1.473 2.506 35.711 -1.538 40.267 5 BB_U5G6:C33A34_CC B 5 ? C 34 ? B 6 ? C 33 ? 1 B G 6 1_555 C C 14 1_555 B G 7 1_555 C C 13 1_555 -0.256 -1.188 3.397 -4.917 10.221 26.616 -4.611 -0.561 2.764 21.028 10.115 28.892 6 BB_G6G7:C32C33_CC B 6 ? C 33 ? B 7 ? C 32 ? 1 B G 7 1_555 C C 13 1_555 B U 8 1_555 C A 12 1_555 -0.649 -1.338 3.796 3.438 15.607 31.217 -4.728 1.632 2.754 26.906 -5.928 34.979 7 BB_G7U8:A31C32_CC B 7 ? C 32 ? B 8 ? C 31 ? 1 B U 8 1_555 C A 12 1_555 B C 9 1_555 C G 11 1_555 0.697 -1.337 3.427 -0.088 6.000 33.102 -3.303 -1.219 3.141 10.425 0.153 33.626 8 BB_U8C9:G30A31_CC B 8 ? C 31 ? B 9 ? C 30 ? 1 B C 9 1_555 C G 11 1_555 B U 10 1_555 C A 10 1_555 0.197 -1.708 3.638 -0.792 18.499 35.902 -4.570 -0.375 2.496 27.848 1.192 40.255 9 BB_C9U10:A29G30_CC B 9 ? C 30 ? B 10 ? C 29 ? 1 B U 10 1_555 C A 10 1_555 B G 11 1_555 C C 9 1_555 0.101 -0.766 3.563 -0.143 9.915 25.350 -4.239 -0.252 3.050 21.570 0.311 27.191 10 BB_U10G11:C28A29_CC B 10 ? C 29 ? B 11 ? C 28 ? 1 B G 11 1_555 C C 9 1_555 B G 12 1_555 C C 8 1_555 -0.625 -1.596 3.893 -1.524 25.993 34.250 -4.921 0.696 2.224 38.074 2.232 42.786 11 BB_G11G12:C27C28_CC B 11 ? C 28 ? B 12 ? C 27 ? 1 B G 12 1_555 C C 8 1_555 B U 13 1_555 C A 7 1_555 -0.022 -1.186 3.591 0.296 5.156 31.553 -3.151 0.097 3.359 9.402 -0.539 31.962 12 BB_G12U13:A26C27_CC B 12 ? C 27 ? B 13 ? C 26 ? 1 B U 13 1_555 C A 7 1_555 B G 14 1_555 C C 6 1_555 0.390 -1.085 3.483 -0.798 8.905 28.815 -3.931 -0.916 3.009 17.373 1.556 30.142 13 BB_U13G14:C25A26_CC B 13 ? C 26 ? B 14 ? C 25 ? 1 B G 14 1_555 C C 6 1_555 B G 15 1_555 C C 5 1_555 0.335 -0.868 3.467 -0.415 -1.323 27.800 -1.467 -0.801 3.499 -2.752 0.864 27.834 14 BB_G14G15:C24C25_CC B 14 ? C 25 ? B 15 ? C 24 ? 1 B G 15 1_555 C C 5 1_555 B C 16 1_555 C G 4 1_555 -0.497 -2.178 4.287 -8.759 9.686 33.812 -5.205 -0.734 3.566 15.934 14.411 36.177 15 BB_G15C16:G23C24_CC B 15 ? C 24 ? B 16 ? C 23 ? 1 B C 16 1_555 C G 4 1_555 B C 17 1_555 C G 3 1_555 1.346 -1.606 3.513 6.315 29.620 42.311 -3.804 -1.128 2.190 36.055 -7.687 51.625 16 BB_C16C17:G22G23_CC B 16 ? C 23 ? B 17 ? C 22 ? 1 B C 17 1_555 C G 3 1_555 B G 18 1_555 C C 2 1_555 -0.304 -0.982 3.079 -1.116 2.325 26.114 -2.746 0.391 2.992 5.131 2.462 26.239 17 BB_C17G18:C21G22_CC B 17 ? C 22 ? B 18 ? C 21 ? 1 B G 18 1_555 C C 2 1_555 B G 19 1_555 C C 1 1_555 -0.217 -1.284 3.620 0.284 2.705 32.991 -2.751 0.433 3.505 4.753 -0.499 33.100 18 BB_G18G19:C20C21_CC B 18 ? C 21 ? B 19 ? C 20 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #