HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-FEB-14 2ML5 TITLE NMR STRUCTURE OF PROTEIN ZP_02064002.1 FROM BACTEROIDES OVATUS ATCC TITLE 2 8483 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 33-186; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 ATCC: 8483; SOURCE 5 GENE: BACOVA_00961; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: SPEEDET KEYWDS GUT MICROBIOME SECRETED PROTEIN, UNKNOWN FUNCTION, PSI-BIOLOGY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG) REVDAT 4 14-JUN-23 2ML5 1 REMARK REVDAT 3 01-FEB-23 2ML5 1 REMARK SEQADV REVDAT 2 04-MAR-15 2ML5 1 JRNL TITLE REVDAT 1 19-MAR-14 2ML5 0 JRNL AUTH S.K.DUTTA,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF PROTEIN ZP_02064002.1 FROM BACTEROIDES JRNL TITL 2 OVATUS ATCC 8483 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPAL REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ML5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103746. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D HNCA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, J-UNIO, CARA, OPAL, REMARK 210 TOPSPIN 3.1, PROSA, GAPRO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 37 OD1 ASP A 121 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 TYR A 129 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 16 TYR A 129 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -178.15 58.37 REMARK 500 1 SER A 3 -174.15 54.16 REMARK 500 1 THR A 7 -164.19 44.84 REMARK 500 1 ASP A 9 14.30 -144.35 REMARK 500 1 ARG A 30 46.80 -143.48 REMARK 500 1 LEU A 35 178.06 75.54 REMARK 500 1 ALA A 43 -173.67 -64.58 REMARK 500 1 ARG A 71 73.18 -156.28 REMARK 500 1 SER A 101 -157.48 -154.25 REMARK 500 1 THR A 124 21.43 -161.07 REMARK 500 2 GLU A 4 113.96 -173.24 REMARK 500 2 ASP A 9 31.26 -163.79 REMARK 500 2 THR A 29 55.21 -102.30 REMARK 500 2 ARG A 30 39.30 -170.49 REMARK 500 2 PRO A 38 -170.37 -69.27 REMARK 500 2 THR A 40 87.00 -159.49 REMARK 500 2 LYS A 58 47.29 -94.62 REMARK 500 2 MET A 67 43.64 -92.35 REMARK 500 2 ASN A 87 59.17 -92.38 REMARK 500 2 HIS A 91 128.48 -172.04 REMARK 500 2 SER A 101 -169.24 -176.00 REMARK 500 2 LEU A 105 131.17 -175.51 REMARK 500 2 GLN A 112 -82.44 -121.02 REMARK 500 2 ASP A 121 130.79 -178.27 REMARK 500 2 ASP A 130 -42.28 -146.24 REMARK 500 2 PRO A 132 -169.44 -69.78 REMARK 500 2 HIS A 154 71.87 -116.59 REMARK 500 3 LEU A 5 -153.87 56.11 REMARK 500 3 ASP A 9 89.39 68.22 REMARK 500 3 ARG A 30 37.54 -143.35 REMARK 500 3 ALA A 43 173.17 -57.35 REMARK 500 3 GLU A 49 90.60 -68.24 REMARK 500 3 MET A 67 49.99 -77.38 REMARK 500 3 CYS A 122 90.21 -161.96 REMARK 500 3 TYR A 127 62.37 -113.54 REMARK 500 3 ASP A 130 -31.17 -157.41 REMARK 500 3 HIS A 154 75.83 -117.62 REMARK 500 4 ASP A 2 -60.63 -135.38 REMARK 500 4 ASP A 9 100.70 -167.53 REMARK 500 4 PRO A 38 -173.59 -66.53 REMARK 500 4 THR A 40 78.78 48.96 REMARK 500 4 ALA A 43 170.40 -58.11 REMARK 500 4 LYS A 58 58.56 -93.86 REMARK 500 4 MET A 67 38.79 -76.70 REMARK 500 4 GLU A 100 54.52 -140.70 REMARK 500 4 CYS A 122 102.00 -164.15 REMARK 500 4 ASP A 130 -60.03 -134.32 REMARK 500 4 HIS A 154 70.18 -117.70 REMARK 500 5 SER A 23 95.17 -167.57 REMARK 500 5 THR A 73 79.41 -68.05 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 1 ASP A 2 4 -145.43 REMARK 500 GLY A 1 ASP A 2 6 -141.31 REMARK 500 SER A 22 SER A 23 7 144.28 REMARK 500 ASP A 2 SER A 3 10 -147.96 REMARK 500 GLY A 1 ASP A 2 12 141.18 REMARK 500 ASP A 44 ASP A 45 12 -147.54 REMARK 500 ASP A 130 LEU A 131 13 -140.90 REMARK 500 GLY A 1 ASP A 2 14 140.85 REMARK 500 SER A 82 LYS A 83 15 145.89 REMARK 500 GLN A 8 ASP A 9 18 148.23 REMARK 500 GLY A 10 GLU A 11 20 147.36 REMARK 500 ASP A 114 GLY A 115 20 -149.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 127 0.07 SIDE CHAIN REMARK 500 4 TYR A 127 0.09 SIDE CHAIN REMARK 500 5 ARG A 71 0.08 SIDE CHAIN REMARK 500 6 ARG A 30 0.08 SIDE CHAIN REMARK 500 6 ARG A 71 0.09 SIDE CHAIN REMARK 500 6 ARG A 106 0.08 SIDE CHAIN REMARK 500 6 TYR A 123 0.10 SIDE CHAIN REMARK 500 7 ARG A 30 0.09 SIDE CHAIN REMARK 500 7 ARG A 106 0.09 SIDE CHAIN REMARK 500 7 TYR A 118 0.11 SIDE CHAIN REMARK 500 8 TYR A 118 0.13 SIDE CHAIN REMARK 500 9 TYR A 98 0.08 SIDE CHAIN REMARK 500 13 TYR A 118 0.09 SIDE CHAIN REMARK 500 15 ARG A 30 0.09 SIDE CHAIN REMARK 500 16 TYR A 28 0.09 SIDE CHAIN REMARK 500 16 ARG A 71 0.10 SIDE CHAIN REMARK 500 16 TYR A 118 0.07 SIDE CHAIN REMARK 500 16 TYR A 129 0.11 SIDE CHAIN REMARK 500 17 TYR A 98 0.07 SIDE CHAIN REMARK 500 17 TYR A 127 0.12 SIDE CHAIN REMARK 500 17 TYR A 129 0.10 SIDE CHAIN REMARK 500 19 ARG A 30 0.12 SIDE CHAIN REMARK 500 20 ARG A 30 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19806 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-419407 RELATED DB: TARGETTRACK DBREF 2ML5 A 2 155 UNP A7LT22 A7LT22_BACOV 33 186 SEQADV 2ML5 GLY A 1 UNP A7LT22 EXPRESSION TAG SEQRES 1 A 155 GLY ASP SER GLU LEU THR THR GLN ASP GLY GLU ASP PHE SEQRES 2 A 155 LYS SER PHE LEU ASP LYS PHE THR SER SER ALA ALA PHE SEQRES 3 A 155 GLN TYR THR ARG VAL LYS PHE PRO LEU LYS THR PRO ILE SEQRES 4 A 155 THR LEU LEU ALA ASP ASP GLY GLU THR GLU LYS THR PHE SEQRES 5 A 155 PRO PHE THR LYS GLU LYS TRP PRO LEU LEU ASP SER GLU SEQRES 6 A 155 THR MET LYS GLU GLU ARG ILE THR GLN GLU GLU GLY GLY SEQRES 7 A 155 ILE TYR VAL SER LYS PHE THR LEU ASN GLU PRO LYS HIS SEQRES 8 A 155 LYS ILE PHE GLU ALA GLY TYR GLU GLU SER GLU VAL ASP SEQRES 9 A 155 LEU ARG VAL GLU PHE GLU LEU GLN ALA ASP GLY LYS TRP SEQRES 10 A 155 TYR VAL VAL ASP CYS TYR THR GLY TRP TYR GLY TYR ASP SEQRES 11 A 155 LEU PRO ILE GLY GLU LEU LYS GLN THR ILE GLN ASN VAL SEQRES 12 A 155 LYS GLU GLU ASN ALA ALA PHE LYS GLU ILE HIS PRO HELIX 1 1 ASP A 12 SER A 23 1 12 HELIX 2 2 SER A 23 TYR A 28 1 6 HELIX 3 3 THR A 55 TRP A 59 5 5 HELIX 4 4 GLU A 135 HIS A 154 1 20 SHEET 1 A 2 ILE A 39 LEU A 42 0 SHEET 2 A 2 GLU A 49 PHE A 52 -1 O LYS A 50 N LEU A 41 SHEET 1 B 5 ARG A 71 THR A 73 0 SHEET 2 B 5 ILE A 79 LYS A 83 -1 O TYR A 80 N ILE A 72 SHEET 3 B 5 HIS A 91 TYR A 98 -1 O GLY A 97 N VAL A 81 SHEET 4 B 5 VAL A 103 LEU A 111 -1 O LEU A 105 N ALA A 96 SHEET 5 B 5 TRP A 117 TYR A 123 -1 O TYR A 118 N GLU A 110 CISPEP 1 PHE A 33 PRO A 34 1 18.32 CISPEP 2 PHE A 33 PRO A 34 2 0.27 CISPEP 3 PHE A 33 PRO A 34 3 -17.12 CISPEP 4 PHE A 33 PRO A 34 4 -10.02 CISPEP 5 PHE A 33 PRO A 34 5 -3.59 CISPEP 6 PHE A 33 PRO A 34 6 -6.13 CISPEP 7 PHE A 33 PRO A 34 7 -17.41 CISPEP 8 PHE A 33 PRO A 34 8 -9.24 CISPEP 9 PHE A 33 PRO A 34 9 -10.19 CISPEP 10 PHE A 33 PRO A 34 10 1.59 CISPEP 11 PHE A 33 PRO A 34 11 -16.86 CISPEP 12 PHE A 33 PRO A 34 12 -14.70 CISPEP 13 PHE A 33 PRO A 34 13 2.31 CISPEP 14 PHE A 33 PRO A 34 14 4.29 CISPEP 15 PHE A 33 PRO A 34 15 -1.24 CISPEP 16 PHE A 33 PRO A 34 16 -17.99 CISPEP 17 PHE A 33 PRO A 34 17 -12.43 CISPEP 18 PHE A 33 PRO A 34 18 -16.03 CISPEP 19 PHE A 33 PRO A 34 19 -12.23 CISPEP 20 PHE A 33 PRO A 34 20 -18.27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1