HEADER VIRAL PROTEIN 15-MAR-14 2MMK TITLE Y41 AND T47 PHOSPHORYLATION OF THE MENGOVIRUS LEADER PROTEIN: NMR TITLE 2 STUDIES OF THE PHOSPHORYLATION OF THE MENGOVIRUS LEADER PROTEIN TITLE 3 REVEAL STABILIZATION OF INTERMOLECULAR DOMAIN INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEADER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-67; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MENGO VIRUS; SOURCE 3 ORGANISM_TAXID: 12107; SOURCE 4 STRAIN: EMCV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41B KEYWDS ANIMAL VIRUSES, POSITIVE-STRAND RNA VIRUSES, CARDIOVIRUSES, LEADER, KEYWDS 2 PROTEIN PHOSPHORYLATION, CASEIN KINASE 2, SPLEEN TYROSINE KINASE, KEYWDS 3 VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.R.BACOT-DAVIS,F.W.PORTER,A.C.PALMENBERG REVDAT 4 14-JUN-23 2MMK 1 REMARK SEQADV LINK REVDAT 3 19-NOV-14 2MMK 1 JRNL REVDAT 2 05-NOV-14 2MMK 1 JRNL REVDAT 1 15-OCT-14 2MMK 0 JRNL AUTH V.R.BACOT-DAVIS,J.J.CIOMPERLIK,H.A.BASTA,C.C.CORNILESCU, JRNL AUTH 2 A.C.PALMENBERG JRNL TITL SOLUTION STRUCTURES OF MENGOVIRUS LEADER PROTEIN, ITS JRNL TITL 2 PHOSPHORYLATED DERIVATIVES, AND IN COMPLEX WITH NUCLEAR JRNL TITL 3 TRANSPORT REGULATORY PROTEIN, RANGTPASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 15792 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25331866 JRNL DOI 10.1073/PNAS.1411098111 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000103793. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 102 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 L MENGO 2P, 20 MM HEPES, 100 MM REMARK 210 POTASSIUM CHLORIDE, 2 MM REMARK 210 MAGNESIUM CHLORIDE, 2 MM DTT, REMARK 210 0.04% SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 1D 31P REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CYANA, TALOS, REMARK 210 SPARTA+, SPARKY, CARA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 36 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 2 TYR A 36 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 3 TYR A 36 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 4 TYR A 36 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 5 TYR A 36 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 6 TYR A 36 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 7 TYR A 36 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 8 TYR A 36 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 9 TYR A 36 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 10 TYR A 36 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 7 -53.83 71.68 REMARK 500 1 GLU A 10 -4.97 77.79 REMARK 500 1 GLU A 12 169.97 67.38 REMARK 500 1 CYS A 14 -116.96 -126.66 REMARK 500 1 ALA A 15 -71.26 -96.26 REMARK 500 1 MET A 18 -114.81 -129.39 REMARK 500 1 ASN A 33 -72.88 -136.15 REMARK 500 2 THR A 7 -53.84 71.65 REMARK 500 2 GLU A 10 -4.97 77.71 REMARK 500 2 GLU A 12 169.94 67.31 REMARK 500 2 CYS A 14 -116.94 -126.68 REMARK 500 2 ALA A 15 -71.20 -96.27 REMARK 500 2 MET A 18 -114.81 -129.48 REMARK 500 2 ASN A 33 -74.47 -133.18 REMARK 500 3 THR A 7 -53.85 71.62 REMARK 500 3 GLU A 10 -4.95 77.75 REMARK 500 3 GLU A 12 169.89 67.37 REMARK 500 3 CYS A 14 -116.96 -126.65 REMARK 500 3 ALA A 15 -71.23 -96.31 REMARK 500 3 MET A 18 -114.85 -129.45 REMARK 500 3 ASN A 33 -78.53 -135.67 REMARK 500 4 THR A 7 -53.88 71.71 REMARK 500 4 GLU A 10 -5.02 77.78 REMARK 500 4 GLU A 12 169.93 67.30 REMARK 500 4 CYS A 14 -117.02 -126.72 REMARK 500 4 ALA A 15 -71.22 -96.24 REMARK 500 4 MET A 18 -114.88 -129.41 REMARK 500 4 ASN A 33 -71.34 -138.44 REMARK 500 5 THR A 7 -53.79 71.63 REMARK 500 5 GLU A 10 -4.96 77.73 REMARK 500 5 GLU A 12 169.96 67.37 REMARK 500 5 CYS A 14 -117.04 -126.72 REMARK 500 5 ALA A 15 -71.21 -96.26 REMARK 500 5 MET A 18 -114.82 -129.36 REMARK 500 5 ASN A 33 -82.27 -131.48 REMARK 500 6 THR A 7 -53.80 71.66 REMARK 500 6 GLU A 10 -4.96 77.69 REMARK 500 6 GLU A 12 169.90 67.44 REMARK 500 6 CYS A 14 -116.95 -126.74 REMARK 500 6 ALA A 15 -71.17 -96.33 REMARK 500 6 MET A 18 -114.84 -129.41 REMARK 500 6 ASN A 33 -79.60 -134.44 REMARK 500 7 THR A 7 -53.78 71.62 REMARK 500 7 GLU A 10 -5.02 77.80 REMARK 500 7 GLU A 12 169.87 67.33 REMARK 500 7 CYS A 14 -116.97 -126.72 REMARK 500 7 ALA A 15 -71.28 -96.26 REMARK 500 7 MET A 18 -114.83 -129.40 REMARK 500 7 ASN A 33 -75.93 -142.36 REMARK 500 8 THR A 7 -53.77 71.60 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19857 RELATED DB: BMRB REMARK 900 RELATED ID: 2MMG RELATED DB: PDB REMARK 900 RELATED ID: 2MMH RELATED DB: PDB REMARK 900 RELATED ID: 2MMI RELATED DB: PDB REMARK 900 RELATED ID: 2MML RELATED DB: PDB DBREF 2MMK A 5 71 UNP P12296 POLG_ENMGO 1 67 SEQADV 2MMK GLY A 1 UNP P12296 EXPRESSION TAG SEQADV 2MMK SER A 2 UNP P12296 EXPRESSION TAG SEQADV 2MMK THR A 3 UNP P12296 EXPRESSION TAG SEQADV 2MMK ALA A 4 UNP P12296 EXPRESSION TAG SEQRES 1 A 71 GLY SER THR ALA MET ALA THR THR MET GLU GLN GLU ILE SEQRES 2 A 71 CYS ALA HIS SER MET THR PHE GLU GLU CYS PRO LYS CYS SEQRES 3 A 71 SER ALA LEU GLN TYR ARG ASN GLY PHE TYR LEU LEU LYS SEQRES 4 A 71 TYR ASP GLU GLU TRP PTR PRO GLU GLU LEU LEU TPO ASP SEQRES 5 A 71 GLY GLU ASP ASP VAL PHE ASP PRO ASP LEU ASP MET GLU SEQRES 6 A 71 VAL VAL PHE GLU THR GLN MODRES 2MMK PTR A 45 TYR O-PHOSPHOTYROSINE MODRES 2MMK TPO A 51 THR PHOSPHOTHREONINE HET PTR A 45 24 HET TPO A 51 17 HET ZN A 101 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETSYN PTR PHOSPHONOTYROSINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ HELIX 1 1 PRO A 46 TPO A 51 1 6 LINK C TRP A 44 N PTR A 45 1555 1555 1.35 LINK C PTR A 45 N PRO A 46 1555 1555 1.37 LINK C LEU A 50 N TPO A 51 1555 1555 1.36 LINK C TPO A 51 N ASP A 52 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1