data_2MND # _entry.id 2MND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MND pdb_00002mnd 10.2210/pdb2mnd/pdb RCSB RCSB103822 ? ? BMRB 19888 ? 10.13018/BMR19888 WWPDB D_1000103822 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2014-09-17 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MND _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-04-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19888 BMRB unspecified . 2MNE PDB unspecified . 2MNF PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alniss, H.Y.' 1 'Salvia, M.-V.' 2 'Sadikov, M.' 3 'Golovchenko, I.' 4 'Anthony, N.G.' 5 'Khalaf, A.I.' 6 'Mackay, S.P.' 7 'Suckling, C.J.' 8 'Parkinson, J.A.' 9 # _citation.id primary _citation.title 'Recognition of the DNA minor groove by thiazotropsin analogues.' _citation.journal_abbrev Chembiochem _citation.journal_volume 15 _citation.page_first 1978 _citation.page_last 1990 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25045155 _citation.pdbx_database_id_DOI 10.1002/cbic.201402202 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Alniss, H.Y.' 1 ? primary 'Salvia, M.V.' 2 ? primary 'Sadikov, M.' 3 ? primary 'Golovchenko, I.' 4 ? primary 'Anthony, N.G.' 5 ? primary 'Khalaf, A.I.' 6 ? primary 'MacKay, S.P.' 7 ? primary 'Suckling, C.J.' 8 ? primary 'Parkinson, J.A.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3'" 3045.992 2 ? ? ? ? 2 non-polymer syn 'thiazotropsin B' 558.676 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DC)(DG)(DC)(DG)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGACGCGTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'thiazotropsin B' _pdbx_entity_nonpoly.comp_id 3BF # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3BF non-polymer . 'thiazotropsin B' ;3-({[2-({[4-({[4-(acetylamino)-1-methyl-1H-imidazol-2-yl]carbonyl}amino)-1-methyl-1H-pyrrol-2-yl]carbonyl}amino)-5-(propan-2-yl)-1,3-thiazol-4-yl]carbonyl}amino)-N,N-dimethylpropan-1-aminium ; 'C25 H36 N9 O4 S 1' 558.676 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DG 2 12 12 DG DG B . n B 1 3 DA 3 13 13 DA DA B . n B 1 4 DC 4 14 14 DC DC B . n B 1 5 DG 5 15 15 DG DG B . n B 1 6 DC 6 16 16 DC DC B . n B 1 7 DG 7 17 17 DG DG B . n B 1 8 DT 8 18 18 DT DT B . n B 1 9 DC 9 19 19 DC DC B . n B 1 10 DG 10 20 20 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3BF 1 101 21 3BF THB A . D 2 3BF 1 101 22 3BF THB B . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MND _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MND _struct.title 'Recognition complex of DNA d(CGACGCGTCG)2 with thiazotropsin B' _struct.pdbx_model_details 'minimized average structure, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2MND _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'THIAZOTROPSINS, DNA RECOGNITION, ISOTHERMAL TITRATION CALORIMETRY NMR, SELF-ASSEMBLY, MINOR GROOVE BINDER, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MND _struct_ref.pdbx_db_accession 2MND _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MND A 1 ? 10 ? 2MND 1 ? 10 ? 1 10 2 1 2MND B 1 ? 10 ? 2MND 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DA 3 N1 ? ? A DG 7 B DA 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DA 3 N6 ? ? A DG 7 B DA 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog18 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 3BF 101 ? 6 'BINDING SITE FOR RESIDUE 3BF A 101' AC2 Software B 3BF 101 ? 8 'BINDING SITE FOR RESIDUE 3BF B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 5 ? DG A 5 . ? 1_555 ? 2 AC1 6 DC A 6 ? DC A 6 . ? 1_555 ? 3 AC1 6 DG A 7 ? DG A 7 . ? 1_555 ? 4 AC1 6 DT A 8 ? DT A 8 . ? 1_555 ? 5 AC1 6 DC A 9 ? DC A 9 . ? 1_555 ? 6 AC1 6 3BF D . ? 3BF B 101 . ? 1_555 ? 7 AC2 8 DC A 4 ? DC A 4 . ? 1_555 ? 8 AC2 8 3BF C . ? 3BF A 101 . ? 1_555 ? 9 AC2 8 DC B 4 ? DC B 14 . ? 1_555 ? 10 AC2 8 DG B 5 ? DG B 15 . ? 1_555 ? 11 AC2 8 DC B 6 ? DC B 16 . ? 1_555 ? 12 AC2 8 DG B 7 ? DG B 17 . ? 1_555 ? 13 AC2 8 DT B 8 ? DT B 18 . ? 1_555 ? 14 AC2 8 DC B 9 ? DC B 19 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? 1.444 1.353 0.091 0.008 N 2 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.273 1.335 -0.062 0.007 N 3 1 C4 A DC 1 ? ? C5 A DC 1 ? ? 1.478 1.425 0.053 0.008 N 4 1 N3 A DG 2 ? ? C4 A DG 2 ? ? 1.441 1.350 0.091 0.007 N 5 1 C4 A DG 2 ? ? C5 A DG 2 ? ? 1.331 1.379 -0.048 0.007 N 6 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.436 1.388 0.048 0.006 N 7 1 N7 A DG 2 ? ? C8 A DG 2 ? ? 1.261 1.305 -0.044 0.006 N 8 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.302 1.374 -0.072 0.007 N 9 1 N9 A DG 2 ? ? C4 A DG 2 ? ? 1.312 1.375 -0.063 0.008 N 10 1 C5 A DA 3 ? ? N7 A DA 3 ? ? 1.339 1.388 -0.049 0.006 N 11 1 N7 A DA 3 ? ? C8 A DA 3 ? ? 1.267 1.311 -0.044 0.007 N 12 1 C8 A DA 3 ? ? N9 A DA 3 ? ? 1.308 1.373 -0.065 0.008 N 13 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.443 1.353 0.090 0.008 N 14 1 N3 A DC 4 ? ? C4 A DC 4 ? ? 1.272 1.335 -0.063 0.007 N 15 1 C4 A DC 4 ? ? C5 A DC 4 ? ? 1.479 1.425 0.054 0.008 N 16 1 N3 A DG 5 ? ? C4 A DG 5 ? ? 1.442 1.350 0.092 0.007 N 17 1 C4 A DG 5 ? ? C5 A DG 5 ? ? 1.331 1.379 -0.048 0.007 N 18 1 C5 A DG 5 ? ? N7 A DG 5 ? ? 1.434 1.388 0.046 0.006 N 19 1 N7 A DG 5 ? ? C8 A DG 5 ? ? 1.258 1.305 -0.047 0.006 N 20 1 C8 A DG 5 ? ? N9 A DG 5 ? ? 1.305 1.374 -0.069 0.007 N 21 1 N9 A DG 5 ? ? C4 A DG 5 ? ? 1.314 1.375 -0.061 0.008 N 22 1 C2 A DC 6 ? ? N3 A DC 6 ? ? 1.443 1.353 0.090 0.008 N 23 1 N3 A DC 6 ? ? C4 A DC 6 ? ? 1.272 1.335 -0.063 0.007 N 24 1 C4 A DC 6 ? ? C5 A DC 6 ? ? 1.479 1.425 0.054 0.008 N 25 1 N3 A DG 7 ? ? C4 A DG 7 ? ? 1.443 1.350 0.093 0.007 N 26 1 C4 A DG 7 ? ? C5 A DG 7 ? ? 1.332 1.379 -0.047 0.007 N 27 1 C5 A DG 7 ? ? N7 A DG 7 ? ? 1.432 1.388 0.044 0.006 N 28 1 N7 A DG 7 ? ? C8 A DG 7 ? ? 1.258 1.305 -0.047 0.006 N 29 1 C8 A DG 7 ? ? N9 A DG 7 ? ? 1.306 1.374 -0.068 0.007 N 30 1 N9 A DG 7 ? ? C4 A DG 7 ? ? 1.315 1.375 -0.060 0.008 N 31 1 C2 A DC 9 ? ? N3 A DC 9 ? ? 1.444 1.353 0.091 0.008 N 32 1 N3 A DC 9 ? ? C4 A DC 9 ? ? 1.273 1.335 -0.062 0.007 N 33 1 C4 A DC 9 ? ? C5 A DC 9 ? ? 1.476 1.425 0.051 0.008 N 34 1 N3 A DG 10 ? ? C4 A DG 10 ? ? 1.440 1.350 0.090 0.007 N 35 1 C4 A DG 10 ? ? C5 A DG 10 ? ? 1.330 1.379 -0.049 0.007 N 36 1 C5 A DG 10 ? ? N7 A DG 10 ? ? 1.435 1.388 0.047 0.006 N 37 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.260 1.305 -0.045 0.006 N 38 1 C8 A DG 10 ? ? N9 A DG 10 ? ? 1.302 1.374 -0.072 0.007 N 39 1 N9 A DG 10 ? ? C4 A DG 10 ? ? 1.310 1.375 -0.065 0.008 N 40 1 C2 B DC 11 ? ? N3 B DC 11 ? ? 1.443 1.353 0.090 0.008 N 41 1 N3 B DC 11 ? ? C4 B DC 11 ? ? 1.271 1.335 -0.064 0.007 N 42 1 C4 B DC 11 ? ? C5 B DC 11 ? ? 1.480 1.425 0.055 0.008 N 43 1 N3 B DG 12 ? ? C4 B DG 12 ? ? 1.442 1.350 0.092 0.007 N 44 1 C4 B DG 12 ? ? C5 B DG 12 ? ? 1.330 1.379 -0.049 0.007 N 45 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.436 1.388 0.048 0.006 N 46 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.261 1.305 -0.044 0.006 N 47 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.304 1.374 -0.070 0.007 N 48 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.312 1.375 -0.063 0.008 N 49 1 C5 B DA 13 ? ? N7 B DA 13 ? ? 1.338 1.388 -0.050 0.006 N 50 1 N7 B DA 13 ? ? C8 B DA 13 ? ? 1.267 1.311 -0.044 0.007 N 51 1 C8 B DA 13 ? ? N9 B DA 13 ? ? 1.307 1.373 -0.066 0.008 N 52 1 C2 B DC 14 ? ? N3 B DC 14 ? ? 1.443 1.353 0.090 0.008 N 53 1 N3 B DC 14 ? ? C4 B DC 14 ? ? 1.272 1.335 -0.063 0.007 N 54 1 C4 B DC 14 ? ? C5 B DC 14 ? ? 1.480 1.425 0.055 0.008 N 55 1 N3 B DG 15 ? ? C4 B DG 15 ? ? 1.441 1.350 0.091 0.007 N 56 1 C4 B DG 15 ? ? C5 B DG 15 ? ? 1.331 1.379 -0.048 0.007 N 57 1 C5 B DG 15 ? ? N7 B DG 15 ? ? 1.434 1.388 0.046 0.006 N 58 1 N7 B DG 15 ? ? C8 B DG 15 ? ? 1.259 1.305 -0.046 0.006 N 59 1 C8 B DG 15 ? ? N9 B DG 15 ? ? 1.306 1.374 -0.068 0.007 N 60 1 N9 B DG 15 ? ? C4 B DG 15 ? ? 1.313 1.375 -0.062 0.008 N 61 1 C2 B DC 16 ? ? N3 B DC 16 ? ? 1.443 1.353 0.090 0.008 N 62 1 N3 B DC 16 ? ? C4 B DC 16 ? ? 1.271 1.335 -0.064 0.007 N 63 1 C4 B DC 16 ? ? C5 B DC 16 ? ? 1.480 1.425 0.055 0.008 N 64 1 N3 B DG 17 ? ? C4 B DG 17 ? ? 1.442 1.350 0.092 0.007 N 65 1 C4 B DG 17 ? ? C5 B DG 17 ? ? 1.331 1.379 -0.048 0.007 N 66 1 C5 B DG 17 ? ? N7 B DG 17 ? ? 1.433 1.388 0.045 0.006 N 67 1 N7 B DG 17 ? ? C8 B DG 17 ? ? 1.260 1.305 -0.045 0.006 N 68 1 C8 B DG 17 ? ? N9 B DG 17 ? ? 1.306 1.374 -0.068 0.007 N 69 1 N9 B DG 17 ? ? C4 B DG 17 ? ? 1.314 1.375 -0.061 0.008 N 70 1 C2 B DC 19 ? ? N3 B DC 19 ? ? 1.444 1.353 0.091 0.008 N 71 1 N3 B DC 19 ? ? C4 B DC 19 ? ? 1.273 1.335 -0.062 0.007 N 72 1 C4 B DC 19 ? ? C5 B DC 19 ? ? 1.479 1.425 0.054 0.008 N 73 1 N3 B DG 20 ? ? C4 B DG 20 ? ? 1.441 1.350 0.091 0.007 N 74 1 C4 B DG 20 ? ? C5 B DG 20 ? ? 1.330 1.379 -0.049 0.007 N 75 1 C5 B DG 20 ? ? N7 B DG 20 ? ? 1.434 1.388 0.046 0.006 N 76 1 N7 B DG 20 ? ? C8 B DG 20 ? ? 1.260 1.305 -0.045 0.006 N 77 1 C8 B DG 20 ? ? N9 B DG 20 ? ? 1.306 1.374 -0.068 0.007 N 78 1 N9 B DG 20 ? ? C4 B DG 20 ? ? 1.311 1.375 -0.064 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 98.83 105.90 -7.07 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.70 108.30 3.40 0.30 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 116.50 121.90 -5.40 0.40 N 4 1 C4 A DC 1 ? ? C5 A DC 1 ? ? C6 A DC 1 ? ? 121.17 117.40 3.77 0.50 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.79 118.90 3.89 0.60 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 116.68 121.90 -5.22 0.70 N 7 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.46 118.00 4.46 0.70 N 8 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 108.36 119.60 -11.24 1.50 N 9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.16 108.30 5.86 0.30 N 10 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 120.96 111.90 9.06 0.50 N 11 1 N3 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 119.03 128.60 -9.57 0.50 N 12 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.51 111.50 4.01 0.50 N 13 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 101.15 110.80 -9.65 0.40 N 14 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 109.30 104.30 5.00 0.50 N 15 1 N7 A DG 2 ? ? C8 A DG 2 ? ? N9 A DG 2 ? ? 110.03 113.10 -3.07 0.50 N 16 1 N9 A DG 2 ? ? C4 A DG 2 ? ? C5 A DG 2 ? ? 111.56 105.40 6.16 0.40 N 17 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 138.49 130.40 8.09 0.60 N 18 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.29 119.90 4.39 0.60 N 19 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 120.20 128.60 -8.40 0.60 N 20 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 109.76 119.60 -9.84 1.50 N 21 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 122.43 129.30 -6.87 0.50 N 22 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 117.97 110.60 7.37 0.50 N 23 1 N3 A DA 3 ? ? C4 A DA 3 ? ? C5 A DA 3 ? ? 119.65 126.80 -7.15 0.70 N 24 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 122.64 117.00 5.64 0.50 N 25 1 C4 A DA 3 ? ? C5 A DA 3 ? ? N7 A DA 3 ? ? 105.56 110.70 -5.14 0.50 N 26 1 C5 A DA 3 ? ? N7 A DA 3 ? ? C8 A DA 3 ? ? 109.68 103.90 5.78 0.50 N 27 1 N3 A DA 3 ? ? C4 A DA 3 ? ? N9 A DA 3 ? ? 134.01 127.40 6.61 0.80 N 28 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 122.96 118.60 4.36 0.60 N 29 1 OP1 A DC 4 ? ? P A DC 4 ? ? OP2 A DC 4 ? ? 109.45 119.60 -10.15 1.50 N 30 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 116.63 121.90 -5.27 0.40 N 31 1 C4 A DC 4 ? ? C5 A DC 4 ? ? C6 A DC 4 ? ? 120.83 117.40 3.43 0.50 N 32 1 N1 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 122.94 118.90 4.04 0.60 N 33 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.72 121.90 -5.18 0.70 N 34 1 N3 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 122.66 118.00 4.66 0.70 N 35 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DG 5 ? ? 127.62 119.70 7.92 1.20 Y 36 1 OP1 A DG 5 ? ? P A DG 5 ? ? OP2 A DG 5 ? ? 109.76 119.60 -9.84 1.50 N 37 1 C2 A DG 5 ? ? N3 A DG 5 ? ? C4 A DG 5 ? ? 120.66 111.90 8.76 0.50 N 38 1 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 118.56 128.60 -10.04 0.50 N 39 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 115.04 111.50 3.54 0.50 N 40 1 C4 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 101.51 110.80 -9.29 0.40 N 41 1 C5 A DG 5 ? ? N7 A DG 5 ? ? C8 A DG 5 ? ? 109.08 104.30 4.78 0.50 N 42 1 N9 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 111.35 105.40 5.95 0.40 N 43 1 N3 A DG 5 ? ? C4 A DG 5 ? ? N9 A DG 5 ? ? 130.09 126.00 4.09 0.60 N 44 1 C6 A DG 5 ? ? C5 A DG 5 ? ? N7 A DG 5 ? ? 137.29 130.40 6.89 0.60 N 45 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 124.73 119.90 4.83 0.60 N 46 1 C5 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 120.23 128.60 -8.37 0.60 N 47 1 OP1 A DC 6 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 109.63 119.60 -9.97 1.50 N 48 1 N3 A DC 6 ? ? C4 A DC 6 ? ? C5 A DC 6 ? ? 116.73 121.90 -5.17 0.40 N 49 1 C4 A DC 6 ? ? C5 A DC 6 ? ? C6 A DC 6 ? ? 120.67 117.40 3.27 0.50 N 50 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.99 118.90 4.09 0.60 N 51 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.80 121.90 -5.10 0.70 N 52 1 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 122.50 118.00 4.50 0.70 N 53 1 OP1 A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 109.82 119.60 -9.78 1.50 N 54 1 C2 A DG 7 ? ? N3 A DG 7 ? ? C4 A DG 7 ? ? 120.77 111.90 8.87 0.50 N 55 1 N3 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 118.18 128.60 -10.42 0.50 N 56 1 C5 A DG 7 ? ? C6 A DG 7 ? ? N1 A DG 7 ? ? 115.24 111.50 3.74 0.50 N 57 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 101.57 110.80 -9.23 0.40 N 58 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 109.08 104.30 4.78 0.50 N 59 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 111.41 105.40 6.01 0.40 N 60 1 N3 A DG 7 ? ? C4 A DG 7 ? ? N9 A DG 7 ? ? 130.41 126.00 4.41 0.60 N 61 1 C6 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 136.97 130.40 6.57 0.60 N 62 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 124.72 119.90 4.82 0.60 N 63 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 120.04 128.60 -8.56 0.60 N 64 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 109.87 119.60 -9.73 1.50 N 65 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 99.83 105.90 -6.07 0.80 N 66 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.41 108.30 2.11 0.30 N 67 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.30 114.60 4.70 0.60 N 68 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.21 127.20 -4.99 0.60 N 69 1 C5 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 119.55 124.90 -5.35 0.70 N 70 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 130.82 119.70 11.12 1.20 Y 71 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 109.53 119.60 -10.07 1.50 N 72 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 116.61 121.90 -5.29 0.40 N 73 1 C4 A DC 9 ? ? C5 A DC 9 ? ? C6 A DC 9 ? ? 120.70 117.40 3.30 0.50 N 74 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.46 118.90 4.56 0.60 N 75 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 115.98 121.90 -5.92 0.70 N 76 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 122.88 118.00 4.88 0.70 N 77 1 OP1 A DG 10 ? ? P A DG 10 ? ? OP2 A DG 10 ? ? 109.61 119.60 -9.99 1.50 N 78 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 100.92 105.90 -4.98 0.80 N 79 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.44 108.30 2.14 0.30 N 80 1 C2 A DG 10 ? ? N3 A DG 10 ? ? C4 A DG 10 ? ? 120.80 111.90 8.90 0.50 N 81 1 N3 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 119.09 128.60 -9.51 0.50 N 82 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.28 111.50 3.78 0.50 N 83 1 C4 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 101.35 110.80 -9.45 0.40 N 84 1 C5 A DG 10 ? ? N7 A DG 10 ? ? C8 A DG 10 ? ? 109.10 104.30 4.80 0.50 N 85 1 N9 A DG 10 ? ? C4 A DG 10 ? ? C5 A DG 10 ? ? 111.48 105.40 6.08 0.40 N 86 1 C6 A DG 10 ? ? C5 A DG 10 ? ? N7 A DG 10 ? ? 138.10 130.40 7.70 0.60 N 87 1 N1 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.55 119.90 4.65 0.60 N 88 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 120.17 128.60 -8.43 0.60 N 89 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? "C2'" B DC 11 ? ? 100.58 105.90 -5.32 0.80 N 90 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 113.19 108.30 4.89 0.30 N 91 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 116.63 121.90 -5.27 0.40 N 92 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 121.01 117.40 3.61 0.50 N 93 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.33 118.90 4.43 0.60 N 94 1 N3 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 116.26 121.90 -5.64 0.70 N 95 1 N3 B DC 11 ? ? C4 B DC 11 ? ? N4 B DC 11 ? ? 122.28 118.00 4.28 0.70 N 96 1 OP1 B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 109.72 119.60 -9.88 1.50 N 97 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? "C2'" B DG 12 ? ? 100.08 105.90 -5.82 0.80 N 98 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.91 108.30 2.61 0.30 N 99 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 120.90 111.90 9.00 0.50 N 100 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 118.79 128.60 -9.81 0.50 N 101 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 115.44 111.50 3.94 0.50 N 102 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 101.27 110.80 -9.53 0.40 N 103 1 C5 B DG 12 ? ? N7 B DG 12 ? ? C8 B DG 12 ? ? 109.20 104.30 4.90 0.50 N 104 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 111.63 105.40 6.23 0.40 N 105 1 C6 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 137.97 130.40 7.57 0.60 N 106 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.51 119.90 4.61 0.60 N 107 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 120.06 128.60 -8.54 0.60 N 108 1 OP1 B DA 13 ? ? P B DA 13 ? ? OP2 B DA 13 ? ? 109.87 119.60 -9.73 1.50 N 109 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.41 108.30 2.11 0.30 N 110 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 122.64 129.30 -6.66 0.50 N 111 1 C2 B DA 13 ? ? N3 B DA 13 ? ? C4 B DA 13 ? ? 118.01 110.60 7.41 0.50 N 112 1 N3 B DA 13 ? ? C4 B DA 13 ? ? C5 B DA 13 ? ? 119.43 126.80 -7.37 0.70 N 113 1 C4 B DA 13 ? ? C5 B DA 13 ? ? C6 B DA 13 ? ? 122.72 117.00 5.72 0.50 N 114 1 C4 B DA 13 ? ? C5 B DA 13 ? ? N7 B DA 13 ? ? 105.55 110.70 -5.15 0.50 N 115 1 C5 B DA 13 ? ? N7 B DA 13 ? ? C8 B DA 13 ? ? 109.68 103.90 5.78 0.50 N 116 1 N3 B DA 13 ? ? C4 B DA 13 ? ? N9 B DA 13 ? ? 134.28 127.40 6.88 0.80 N 117 1 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 123.40 118.60 4.80 0.60 N 118 1 OP1 B DC 14 ? ? P B DC 14 ? ? OP2 B DC 14 ? ? 109.47 119.60 -10.13 1.50 N 119 1 N3 B DC 14 ? ? C4 B DC 14 ? ? C5 B DC 14 ? ? 116.54 121.90 -5.36 0.40 N 120 1 C4 B DC 14 ? ? C5 B DC 14 ? ? C6 B DC 14 ? ? 121.04 117.40 3.64 0.50 N 121 1 N1 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 123.21 118.90 4.31 0.60 N 122 1 N3 B DC 14 ? ? C2 B DC 14 ? ? O2 B DC 14 ? ? 116.43 121.90 -5.47 0.70 N 123 1 N3 B DC 14 ? ? C4 B DC 14 ? ? N4 B DC 14 ? ? 122.46 118.00 4.46 0.70 N 124 1 OP1 B DG 15 ? ? P B DG 15 ? ? OP2 B DG 15 ? ? 109.80 119.60 -9.80 1.50 N 125 1 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 102.55 108.00 -5.45 0.70 N 126 1 C2 B DG 15 ? ? N3 B DG 15 ? ? C4 B DG 15 ? ? 120.75 111.90 8.85 0.50 N 127 1 N3 B DG 15 ? ? C4 B DG 15 ? ? C5 B DG 15 ? ? 118.60 128.60 -10.00 0.50 N 128 1 C5 B DG 15 ? ? C6 B DG 15 ? ? N1 B DG 15 ? ? 115.09 111.50 3.59 0.50 N 129 1 C4 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 101.46 110.80 -9.34 0.40 N 130 1 C5 B DG 15 ? ? N7 B DG 15 ? ? C8 B DG 15 ? ? 109.14 104.30 4.84 0.50 N 131 1 N9 B DG 15 ? ? C4 B DG 15 ? ? C5 B DG 15 ? ? 111.42 105.40 6.02 0.40 N 132 1 N3 B DG 15 ? ? C4 B DG 15 ? ? N9 B DG 15 ? ? 129.98 126.00 3.98 0.60 N 133 1 C6 B DG 15 ? ? C5 B DG 15 ? ? N7 B DG 15 ? ? 137.45 130.40 7.05 0.60 N 134 1 N1 B DG 15 ? ? C6 B DG 15 ? ? O6 B DG 15 ? ? 124.80 119.90 4.90 0.60 N 135 1 C5 B DG 15 ? ? C6 B DG 15 ? ? O6 B DG 15 ? ? 120.10 128.60 -8.50 0.60 N 136 1 "C3'" B DG 15 ? ? "O3'" B DG 15 ? ? P B DC 16 ? ? 127.67 119.70 7.97 1.20 Y 137 1 OP1 B DC 16 ? ? P B DC 16 ? ? OP2 B DC 16 ? ? 110.01 119.60 -9.59 1.50 N 138 1 N3 B DC 16 ? ? C4 B DC 16 ? ? C5 B DC 16 ? ? 116.73 121.90 -5.17 0.40 N 139 1 C4 B DC 16 ? ? C5 B DC 16 ? ? C6 B DC 16 ? ? 120.90 117.40 3.50 0.50 N 140 1 N1 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 122.83 118.90 3.93 0.60 N 141 1 N3 B DC 16 ? ? C2 B DC 16 ? ? O2 B DC 16 ? ? 116.95 121.90 -4.95 0.70 N 142 1 N3 B DC 16 ? ? C4 B DC 16 ? ? N4 B DC 16 ? ? 122.49 118.00 4.49 0.70 N 143 1 OP1 B DG 17 ? ? P B DG 17 ? ? OP2 B DG 17 ? ? 109.58 119.60 -10.02 1.50 N 144 1 C2 B DG 17 ? ? N3 B DG 17 ? ? C4 B DG 17 ? ? 120.83 111.90 8.93 0.50 N 145 1 N3 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 118.52 128.60 -10.08 0.50 N 146 1 C5 B DG 17 ? ? C6 B DG 17 ? ? N1 B DG 17 ? ? 115.13 111.50 3.63 0.50 N 147 1 C4 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 101.49 110.80 -9.31 0.40 N 148 1 C5 B DG 17 ? ? N7 B DG 17 ? ? C8 B DG 17 ? ? 109.10 104.30 4.80 0.50 N 149 1 N9 B DG 17 ? ? C4 B DG 17 ? ? C5 B DG 17 ? ? 111.55 105.40 6.15 0.40 N 150 1 N3 B DG 17 ? ? C4 B DG 17 ? ? N9 B DG 17 ? ? 129.93 126.00 3.93 0.60 N 151 1 C6 B DG 17 ? ? C5 B DG 17 ? ? N7 B DG 17 ? ? 137.31 130.40 6.91 0.60 N 152 1 N1 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 124.84 119.90 4.94 0.60 N 153 1 C5 B DG 17 ? ? C6 B DG 17 ? ? O6 B DG 17 ? ? 120.04 128.60 -8.56 0.60 N 154 1 OP1 B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 109.97 119.60 -9.63 1.50 N 155 1 "O4'" B DT 18 ? ? "C4'" B DT 18 ? ? "C3'" B DT 18 ? ? 102.04 104.50 -2.46 0.40 N 156 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 110.54 108.30 2.24 0.30 N 157 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 118.90 114.60 4.30 0.60 N 158 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 122.32 127.20 -4.88 0.60 N 159 1 C5 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 119.65 124.90 -5.25 0.70 N 160 1 "C3'" B DT 18 ? ? "O3'" B DT 18 ? ? P B DC 19 ? ? 127.46 119.70 7.76 1.20 Y 161 1 OP1 B DC 19 ? ? P B DC 19 ? ? OP2 B DC 19 ? ? 109.97 119.60 -9.63 1.50 N 162 1 N3 B DC 19 ? ? C4 B DC 19 ? ? C5 B DC 19 ? ? 116.61 121.90 -5.29 0.40 N 163 1 C4 B DC 19 ? ? C5 B DC 19 ? ? C6 B DC 19 ? ? 120.90 117.40 3.50 0.50 N 164 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 122.99 118.90 4.09 0.60 N 165 1 N3 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 116.64 121.90 -5.26 0.70 N 166 1 N3 B DC 19 ? ? C4 B DC 19 ? ? N4 B DC 19 ? ? 122.86 118.00 4.86 0.70 N 167 1 OP1 B DG 20 ? ? P B DG 20 ? ? OP2 B DG 20 ? ? 109.71 119.60 -9.89 1.50 N 168 1 C2 B DG 20 ? ? N3 B DG 20 ? ? C4 B DG 20 ? ? 120.94 111.90 9.04 0.50 N 169 1 N3 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 118.93 128.60 -9.67 0.50 N 170 1 C5 B DG 20 ? ? C6 B DG 20 ? ? N1 B DG 20 ? ? 115.38 111.50 3.88 0.50 N 171 1 C4 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 101.21 110.80 -9.59 0.40 N 172 1 C5 B DG 20 ? ? N7 B DG 20 ? ? C8 B DG 20 ? ? 109.31 104.30 5.01 0.50 N 173 1 N7 B DG 20 ? ? C8 B DG 20 ? ? N9 B DG 20 ? ? 110.07 113.10 -3.03 0.50 N 174 1 N9 B DG 20 ? ? C4 B DG 20 ? ? C5 B DG 20 ? ? 111.73 105.40 6.33 0.40 N 175 1 C6 B DG 20 ? ? C5 B DG 20 ? ? N7 B DG 20 ? ? 138.18 130.40 7.78 0.60 N 176 1 N1 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 124.77 119.90 4.87 0.60 N 177 1 C5 B DG 20 ? ? C6 B DG 20 ? ? O6 B DG 20 ? ? 119.86 128.60 -8.74 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 4 ? ? 0.072 'SIDE CHAIN' 2 1 DA B 13 ? ? 0.068 'SIDE CHAIN' 3 1 DG B 15 ? ? 0.056 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MND _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MND _pdbx_nmr_representative.selection_criteria 'minimized average structure' # _pdbx_nmr_sample_details.contents ;2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3', 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Thiazotropsin B-1' 2 ? mM ? 1 "5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3'-2" 2 ? mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MND _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 740 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 318 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 141 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2MND _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Bruker Biospin' processing TopSpin 2.1 2 Goddard 'chemical shift assignment' Sparky ? 3 Goddard 'data analysis' Sparky ? 4 Goddard 'peak picking' Sparky ? 5 Tripos 'geometry optimization' SYBYL ? 6 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'geometry optimization' Amber ? 7 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber ? 8 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' 'structure solution' Amber ? 9 Tripos 'structure solution' MARDIGRAS ? 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3BF N2 N N N 1 3BF C4 C Y N 2 3BF N5 N Y N 3 3BF N8 N N N 4 3BF C6 C Y N 5 3BF C7 C N N 6 3BF C9 C Y N 7 3BF C10 C Y N 8 3BF C11 C N N 9 3BF "O1'" O N N 10 3BF "C1'" C N N 11 3BF C1 C N N 12 3BF C3 C Y N 13 3BF C5 C N N 14 3BF N6 N Y N 15 3BF O7 O N N 16 3BF N11 N Y N 17 3BF C13 C Y N 18 3BF C12 C Y N 19 3BF C14 C N N 20 3BF O12 O N N 21 3BF N14 N N N 22 3BF C15 C Y N 23 3BF S16 S Y N 24 3BF C17 C Y N 25 3BF C20 C N N 26 3BF C21 C N N 27 3BF C28 C N N 28 3BF N19 N Y N 29 3BF C18 C Y N 30 3BF C22 C N N 31 3BF O22 O N N 32 3BF N22 N N N 33 3BF C23 C N N 34 3BF C24 C N N 35 3BF C25 C N N 36 3BF N26 N N N 37 3BF C29 C N N 38 3BF C27 C N N 39 3BF H2 H N N 40 3BF H4 H N N 41 3BF H8 H N N 42 3BF H10 H N N 43 3BF H111 H N N 44 3BF H112 H N N 45 3BF H113 H N N 46 3BF H102 H N N 47 3BF H101 H N N 48 3BF H103 H N N 49 3BF H53 H N N 50 3BF H51 H N N 51 3BF H52 H N N 52 3BF H13 H N N 53 3BF H14 H N N 54 3BF H20 H N N 55 3BF H212 H N N 56 3BF H211 H N N 57 3BF H213 H N N 58 3BF H283 H N N 59 3BF H281 H N N 60 3BF H282 H N N 61 3BF H22 H N N 62 3BF H232 H N N 63 3BF H231 H N N 64 3BF H242 H N N 65 3BF H241 H N N 66 3BF H251 H N N 67 3BF H252 H N N 68 3BF H291 H N N 69 3BF H293 H N N 70 3BF H292 H N N 71 3BF H273 H N N 72 3BF H272 H N N 73 3BF H271 H N N 74 3BF H26 H N N 75 DA OP3 O N N 76 DA P P N N 77 DA OP1 O N N 78 DA OP2 O N N 79 DA "O5'" O N N 80 DA "C5'" C N N 81 DA "C4'" C N R 82 DA "O4'" O N N 83 DA "C3'" C N S 84 DA "O3'" O N N 85 DA "C2'" C N N 86 DA "C1'" C N R 87 DA N9 N Y N 88 DA C8 C Y N 89 DA N7 N Y N 90 DA C5 C Y N 91 DA C6 C Y N 92 DA N6 N N N 93 DA N1 N Y N 94 DA C2 C Y N 95 DA N3 N Y N 96 DA C4 C Y N 97 DA HOP3 H N N 98 DA HOP2 H N N 99 DA "H5'" H N N 100 DA "H5''" H N N 101 DA "H4'" H N N 102 DA "H3'" H N N 103 DA "HO3'" H N N 104 DA "H2'" H N N 105 DA "H2''" H N N 106 DA "H1'" H N N 107 DA H8 H N N 108 DA H61 H N N 109 DA H62 H N N 110 DA H2 H N N 111 DC OP3 O N N 112 DC P P N N 113 DC OP1 O N N 114 DC OP2 O N N 115 DC "O5'" O N N 116 DC "C5'" C N N 117 DC "C4'" C N R 118 DC "O4'" O N N 119 DC "C3'" C N S 120 DC "O3'" O N N 121 DC "C2'" C N N 122 DC "C1'" C N R 123 DC N1 N N N 124 DC C2 C N N 125 DC O2 O N N 126 DC N3 N N N 127 DC C4 C N N 128 DC N4 N N N 129 DC C5 C N N 130 DC C6 C N N 131 DC HOP3 H N N 132 DC HOP2 H N N 133 DC "H5'" H N N 134 DC "H5''" H N N 135 DC "H4'" H N N 136 DC "H3'" H N N 137 DC "HO3'" H N N 138 DC "H2'" H N N 139 DC "H2''" H N N 140 DC "H1'" H N N 141 DC H41 H N N 142 DC H42 H N N 143 DC H5 H N N 144 DC H6 H N N 145 DG OP3 O N N 146 DG P P N N 147 DG OP1 O N N 148 DG OP2 O N N 149 DG "O5'" O N N 150 DG "C5'" C N N 151 DG "C4'" C N R 152 DG "O4'" O N N 153 DG "C3'" C N S 154 DG "O3'" O N N 155 DG "C2'" C N N 156 DG "C1'" C N R 157 DG N9 N Y N 158 DG C8 C Y N 159 DG N7 N Y N 160 DG C5 C Y N 161 DG C6 C N N 162 DG O6 O N N 163 DG N1 N N N 164 DG C2 C N N 165 DG N2 N N N 166 DG N3 N N N 167 DG C4 C Y N 168 DG HOP3 H N N 169 DG HOP2 H N N 170 DG "H5'" H N N 171 DG "H5''" H N N 172 DG "H4'" H N N 173 DG "H3'" H N N 174 DG "HO3'" H N N 175 DG "H2'" H N N 176 DG "H2''" H N N 177 DG "H1'" H N N 178 DG H8 H N N 179 DG H1 H N N 180 DG H21 H N N 181 DG H22 H N N 182 DT OP3 O N N 183 DT P P N N 184 DT OP1 O N N 185 DT OP2 O N N 186 DT "O5'" O N N 187 DT "C5'" C N N 188 DT "C4'" C N R 189 DT "O4'" O N N 190 DT "C3'" C N S 191 DT "O3'" O N N 192 DT "C2'" C N N 193 DT "C1'" C N R 194 DT N1 N N N 195 DT C2 C N N 196 DT O2 O N N 197 DT N3 N N N 198 DT C4 C N N 199 DT O4 O N N 200 DT C5 C N N 201 DT C7 C N N 202 DT C6 C N N 203 DT HOP3 H N N 204 DT HOP2 H N N 205 DT "H5'" H N N 206 DT "H5''" H N N 207 DT "H4'" H N N 208 DT "H3'" H N N 209 DT "HO3'" H N N 210 DT "H2'" H N N 211 DT "H2''" H N N 212 DT "H1'" H N N 213 DT H3 H N N 214 DT H71 H N N 215 DT H72 H N N 216 DT H73 H N N 217 DT H6 H N N 218 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3BF C21 C20 sing N N 1 3BF C28 C20 sing N N 2 3BF C20 C17 sing N N 3 3BF C11 N11 sing N N 4 3BF S16 C17 sing Y N 5 3BF S16 C15 sing Y N 6 3BF O12 C14 doub N N 7 3BF C17 C18 doub Y N 8 3BF N11 C10 sing Y N 9 3BF N11 C12 sing Y N 10 3BF C29 N26 sing N N 11 3BF C14 C12 sing N N 12 3BF C14 N14 sing N N 13 3BF O22 C22 doub N N 14 3BF C18 C22 sing N N 15 3BF C18 N19 sing Y N 16 3BF C15 N14 sing N N 17 3BF C15 N19 doub Y N 18 3BF C10 C9 doub Y N 19 3BF C12 C13 doub Y N 20 3BF C22 N22 sing N N 21 3BF N26 C27 sing N N 22 3BF N26 C25 sing N N 23 3BF C9 C13 sing Y N 24 3BF C9 N8 sing N N 25 3BF C25 C24 sing N N 26 3BF O7 C7 doub N N 27 3BF N22 C23 sing N N 28 3BF N8 C7 sing N N 29 3BF C7 C6 sing N N 30 3BF C23 C24 sing N N 31 3BF C5 N5 sing N N 32 3BF C6 N5 sing Y N 33 3BF C6 N6 doub Y N 34 3BF N5 C4 sing Y N 35 3BF N6 C3 sing Y N 36 3BF C4 C3 doub Y N 37 3BF C3 N2 sing N N 38 3BF N2 "C1'" sing N N 39 3BF "O1'" "C1'" doub N N 40 3BF "C1'" C1 sing N N 41 3BF N2 H2 sing N N 42 3BF C4 H4 sing N N 43 3BF N8 H8 sing N N 44 3BF C10 H10 sing N N 45 3BF C11 H111 sing N N 46 3BF C11 H112 sing N N 47 3BF C11 H113 sing N N 48 3BF C1 H102 sing N N 49 3BF C1 H101 sing N N 50 3BF C1 H103 sing N N 51 3BF C5 H53 sing N N 52 3BF C5 H51 sing N N 53 3BF C5 H52 sing N N 54 3BF C13 H13 sing N N 55 3BF N14 H14 sing N N 56 3BF C20 H20 sing N N 57 3BF C21 H212 sing N N 58 3BF C21 H211 sing N N 59 3BF C21 H213 sing N N 60 3BF C28 H283 sing N N 61 3BF C28 H281 sing N N 62 3BF C28 H282 sing N N 63 3BF N22 H22 sing N N 64 3BF C23 H232 sing N N 65 3BF C23 H231 sing N N 66 3BF C24 H242 sing N N 67 3BF C24 H241 sing N N 68 3BF C25 H251 sing N N 69 3BF C25 H252 sing N N 70 3BF C29 H291 sing N N 71 3BF C29 H293 sing N N 72 3BF C29 H292 sing N N 73 3BF C27 H273 sing N N 74 3BF C27 H272 sing N N 75 3BF C27 H271 sing N N 76 3BF N26 H26 sing N N 77 DA OP3 P sing N N 78 DA OP3 HOP3 sing N N 79 DA P OP1 doub N N 80 DA P OP2 sing N N 81 DA P "O5'" sing N N 82 DA OP2 HOP2 sing N N 83 DA "O5'" "C5'" sing N N 84 DA "C5'" "C4'" sing N N 85 DA "C5'" "H5'" sing N N 86 DA "C5'" "H5''" sing N N 87 DA "C4'" "O4'" sing N N 88 DA "C4'" "C3'" sing N N 89 DA "C4'" "H4'" sing N N 90 DA "O4'" "C1'" sing N N 91 DA "C3'" "O3'" sing N N 92 DA "C3'" "C2'" sing N N 93 DA "C3'" "H3'" sing N N 94 DA "O3'" "HO3'" sing N N 95 DA "C2'" "C1'" sing N N 96 DA "C2'" "H2'" sing N N 97 DA "C2'" "H2''" sing N N 98 DA "C1'" N9 sing N N 99 DA "C1'" "H1'" sing N N 100 DA N9 C8 sing Y N 101 DA N9 C4 sing Y N 102 DA C8 N7 doub Y N 103 DA C8 H8 sing N N 104 DA N7 C5 sing Y N 105 DA C5 C6 sing Y N 106 DA C5 C4 doub Y N 107 DA C6 N6 sing N N 108 DA C6 N1 doub Y N 109 DA N6 H61 sing N N 110 DA N6 H62 sing N N 111 DA N1 C2 sing Y N 112 DA C2 N3 doub Y N 113 DA C2 H2 sing N N 114 DA N3 C4 sing Y N 115 DC OP3 P sing N N 116 DC OP3 HOP3 sing N N 117 DC P OP1 doub N N 118 DC P OP2 sing N N 119 DC P "O5'" sing N N 120 DC OP2 HOP2 sing N N 121 DC "O5'" "C5'" sing N N 122 DC "C5'" "C4'" sing N N 123 DC "C5'" "H5'" sing N N 124 DC "C5'" "H5''" sing N N 125 DC "C4'" "O4'" sing N N 126 DC "C4'" "C3'" sing N N 127 DC "C4'" "H4'" sing N N 128 DC "O4'" "C1'" sing N N 129 DC "C3'" "O3'" sing N N 130 DC "C3'" "C2'" sing N N 131 DC "C3'" "H3'" sing N N 132 DC "O3'" "HO3'" sing N N 133 DC "C2'" "C1'" sing N N 134 DC "C2'" "H2'" sing N N 135 DC "C2'" "H2''" sing N N 136 DC "C1'" N1 sing N N 137 DC "C1'" "H1'" sing N N 138 DC N1 C2 sing N N 139 DC N1 C6 sing N N 140 DC C2 O2 doub N N 141 DC C2 N3 sing N N 142 DC N3 C4 doub N N 143 DC C4 N4 sing N N 144 DC C4 C5 sing N N 145 DC N4 H41 sing N N 146 DC N4 H42 sing N N 147 DC C5 C6 doub N N 148 DC C5 H5 sing N N 149 DC C6 H6 sing N N 150 DG OP3 P sing N N 151 DG OP3 HOP3 sing N N 152 DG P OP1 doub N N 153 DG P OP2 sing N N 154 DG P "O5'" sing N N 155 DG OP2 HOP2 sing N N 156 DG "O5'" "C5'" sing N N 157 DG "C5'" "C4'" sing N N 158 DG "C5'" "H5'" sing N N 159 DG "C5'" "H5''" sing N N 160 DG "C4'" "O4'" sing N N 161 DG "C4'" "C3'" sing N N 162 DG "C4'" "H4'" sing N N 163 DG "O4'" "C1'" sing N N 164 DG "C3'" "O3'" sing N N 165 DG "C3'" "C2'" sing N N 166 DG "C3'" "H3'" sing N N 167 DG "O3'" "HO3'" sing N N 168 DG "C2'" "C1'" sing N N 169 DG "C2'" "H2'" sing N N 170 DG "C2'" "H2''" sing N N 171 DG "C1'" N9 sing N N 172 DG "C1'" "H1'" sing N N 173 DG N9 C8 sing Y N 174 DG N9 C4 sing Y N 175 DG C8 N7 doub Y N 176 DG C8 H8 sing N N 177 DG N7 C5 sing Y N 178 DG C5 C6 sing N N 179 DG C5 C4 doub Y N 180 DG C6 O6 doub N N 181 DG C6 N1 sing N N 182 DG N1 C2 sing N N 183 DG N1 H1 sing N N 184 DG C2 N2 sing N N 185 DG C2 N3 doub N N 186 DG N2 H21 sing N N 187 DG N2 H22 sing N N 188 DG N3 C4 sing N N 189 DT OP3 P sing N N 190 DT OP3 HOP3 sing N N 191 DT P OP1 doub N N 192 DT P OP2 sing N N 193 DT P "O5'" sing N N 194 DT OP2 HOP2 sing N N 195 DT "O5'" "C5'" sing N N 196 DT "C5'" "C4'" sing N N 197 DT "C5'" "H5'" sing N N 198 DT "C5'" "H5''" sing N N 199 DT "C4'" "O4'" sing N N 200 DT "C4'" "C3'" sing N N 201 DT "C4'" "H4'" sing N N 202 DT "O4'" "C1'" sing N N 203 DT "C3'" "O3'" sing N N 204 DT "C3'" "C2'" sing N N 205 DT "C3'" "H3'" sing N N 206 DT "O3'" "HO3'" sing N N 207 DT "C2'" "C1'" sing N N 208 DT "C2'" "H2'" sing N N 209 DT "C2'" "H2''" sing N N 210 DT "C1'" N1 sing N N 211 DT "C1'" "H1'" sing N N 212 DT N1 C2 sing N N 213 DT N1 C6 sing N N 214 DT C2 O2 doub N N 215 DT C2 N3 sing N N 216 DT N3 C4 sing N N 217 DT N3 H3 sing N N 218 DT C4 O4 doub N N 219 DT C4 C5 sing N N 220 DT C5 C7 sing N N 221 DT C5 C6 doub N N 222 DT C7 H71 sing N N 223 DT C7 H72 sing N N 224 DT C7 H73 sing N N 225 DT C6 H6 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MND 'double helix' 2MND 'b-form double helix' 2MND 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.707 -0.653 -1.994 27.717 -35.916 6.302 1 A_DC1:DG20_B A 1 ? B 20 ? ? 1 1 A DG 2 1_555 B DC 9 1_555 0.603 -0.256 1.506 -3.139 -18.943 -8.732 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 -0.161 -0.068 -0.176 -10.769 -21.309 3.445 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 0.813 -0.335 -0.164 -8.199 -18.288 -4.697 4 A_DC4:DG17_B A 4 ? B 17 ? 19 1 1 A DG 5 1_555 B DC 6 1_555 -0.161 -0.514 1.395 2.574 -16.762 -7.329 5 A_DG5:DC16_B A 5 ? B 16 ? 19 1 1 A DC 6 1_555 B DG 5 1_555 0.531 -0.232 0.569 -9.459 -1.541 -2.011 6 A_DC6:DG15_B A 6 ? B 15 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.297 -0.161 0.863 -0.888 -3.227 -1.268 7 A_DG7:DC14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.688 -0.391 1.448 1.321 -5.978 -8.832 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.368 -0.310 0.784 8.669 -11.507 -8.454 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.008 -0.596 1.418 4.571 -22.878 -16.266 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.420 0.830 4.202 -25.684 9.713 35.229 -0.143 -2.727 3.777 13.766 36.401 44.398 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 0.625 -0.650 3.677 8.630 4.289 33.739 -1.812 0.436 3.616 7.209 -14.506 35.050 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.969 -0.269 3.015 -0.733 12.893 33.841 -2.094 1.467 2.753 21.214 1.207 36.154 3 AA_DA3DC4:DG17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DC 4 1_555 B DG 7 1_555 A DG 5 1_555 B DC 6 1_555 -0.933 0.813 3.403 -13.160 2.386 32.257 0.956 -0.657 3.554 4.082 22.516 34.852 4 AA_DC4DG5:DC16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DG 5 1_555 B DC 6 1_555 A DC 6 1_555 B DG 5 1_555 0.361 -0.213 3.535 3.710 -8.042 42.010 0.583 -0.090 3.533 -11.070 -5.108 42.892 5 AA_DG5DC6:DG15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DC 6 1_555 B DG 5 1_555 A DG 7 1_555 B DC 4 1_555 0.352 0.866 3.456 -1.129 7.857 32.811 0.107 -0.807 3.549 13.661 1.963 33.732 6 AA_DC6DG7:DC14DG15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 -0.312 -1.014 3.146 -5.008 1.757 29.798 -2.284 -0.376 3.092 3.383 9.642 30.256 7 AA_DG7DT8:DA13DC14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.353 -1.315 2.712 3.541 0.790 41.014 -1.941 0.816 2.650 1.125 -5.042 41.167 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.497 -1.652 2.946 -7.944 -10.162 32.547 -1.222 -0.368 3.327 -17.308 13.530 34.945 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _atom_sites.entry_id 2MND _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_