data_2MS5 # _entry.id 2MS5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MS5 pdb_00002ms5 10.2210/pdb2ms5/pdb RCSB RCSB103986 ? ? BMRB 25106 ? ? WWPDB D_1000103986 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 3NJ6 PDB '0.95 A resolution X-ray structure of (GGCAGCAGCC)2' unspecified 3NJ7 PDB '1.9 A resolution X-ray structure of (GGCAGCAGCC)2' unspecified 4J50 PDB 'Crystal Structure of an Expanded RNA CAG Repeat' unspecified 25106 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MS5 _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-07-23 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, A.' 1 'Tawani, A.' 2 # _citation.id primary _citation.title ;Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington's Disease (HD) and Spinocerebellar Ataxias (SCAs) ; _citation.journal_abbrev 'Plos One' _citation.journal_volume 10 _citation.page_first e0131788 _citation.page_last e0131788 _citation.year 2015 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26148061 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0131788 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tawani, A.' 1 ? primary 'Kumar, A.' 2 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')" _entity.formula_weight 2885.799 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCGCAGCGG _entity_poly.pdbx_seq_one_letter_code_can CCGCAGCGG _entity_poly.pdbx_strand_id S,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 G n 1 4 C n 1 5 A n 1 6 G n 1 7 C n 1 8 G n 1 9 G n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MS5 _struct_ref.pdbx_db_accession 2MS5 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MS5 S 1 ? 9 ? 2MS5 1 ? 9 ? 1 9 2 1 2MS5 A 1 ? 9 ? 2MS5 1 ? 9 ? 1 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D DQF-COSY' 1 2 1 '2D 1H-1H NOESY' 1 3 1 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.018 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;2.35 mM RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')-1, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 400 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MS5 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MS5 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MS5 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Accelrys Software Inc.' 'structure solution' Discover 1 ? ? refinement Discover 2 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MS5 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MS5 _struct.title 'Structural dynamics of double-helical RNA having CAG motif' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MS5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;CAG repeat expansion, Trinucleotide repeats, Huntington's Disease, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 9 N1 ? ? S C 1 A G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 9 O6 ? ? S C 1 A G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 9 N2 ? ? S C 1 A G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 8 N1 ? ? S C 2 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 8 O6 ? ? S C 2 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 8 N2 ? ? S C 2 A G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 7 N3 ? ? S G 3 A C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 7 O2 ? ? S G 3 A C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 7 N4 ? ? S G 3 A C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 6 N1 ? ? S C 4 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 6 O6 ? ? S C 4 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 6 N2 ? ? S C 4 A G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 B A 5 N1 ? ? S A 5 A A 5 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 4 N3 ? ? S G 6 A C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 4 O2 ? ? S G 6 A C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 4 N4 ? ? S G 6 A C 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 3 N1 ? ? S C 7 A G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 3 O6 ? ? S C 7 A G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 3 N2 ? ? S C 7 A G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 2 N3 ? ? S G 8 A C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 2 O2 ? ? S G 8 A C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 2 N4 ? ? S G 8 A C 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 1 N3 ? ? S G 9 A C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 1 O2 ? ? S G 9 A C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 1 N4 ? ? S G 9 A C 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2MS5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C S . n A 1 2 C 2 2 2 C C S . n A 1 3 G 3 3 3 G G S . n A 1 4 C 4 4 4 C C S . n A 1 5 A 5 5 5 A A S . n A 1 6 G 6 6 6 G G S . n A 1 7 C 7 7 7 C C S . n A 1 8 G 8 8 8 G G S . n A 1 9 G 9 9 9 G G S . n B 1 1 C 1 1 1 C C A . n B 1 2 C 2 2 2 C C A . n B 1 3 G 3 3 3 G G A . n B 1 4 C 4 4 4 C C A . n B 1 5 A 5 5 5 A A A . n B 1 6 G 6 6 6 G G A . n B 1 7 C 7 7 7 C C A . n B 1 8 G 8 8 8 G G A . n B 1 9 G 9 9 9 G G A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-28 2 'Structure model' 1 1 2015-07-15 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_nmr_exptl_sample.component ;RNA (5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')-1 ; _pdbx_nmr_exptl_sample.concentration 2.35 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P S C 1 ? ? OP1 S C 1 ? ? 1.601 1.485 0.116 0.017 N 2 1 "C2'" S C 1 ? ? "C1'" S C 1 ? ? 1.596 1.529 0.067 0.011 N 3 1 C5 S C 1 ? ? C6 S C 1 ? ? 1.405 1.339 0.066 0.008 N 4 1 "O3'" S C 1 ? ? P S C 2 ? ? 1.527 1.607 -0.080 0.012 Y 5 1 C4 S C 2 ? ? C5 S C 2 ? ? 1.375 1.425 -0.050 0.008 N 6 1 N7 S G 3 ? ? C8 S G 3 ? ? 1.360 1.305 0.055 0.006 N 7 1 "O4'" S C 4 ? ? "C4'" S C 4 ? ? 1.350 1.451 -0.101 0.013 N 8 1 C4 S C 4 ? ? C5 S C 4 ? ? 1.363 1.425 -0.062 0.008 N 9 1 C5 S C 4 ? ? C6 S C 4 ? ? 1.409 1.339 0.070 0.008 N 10 1 P S A 5 ? ? "O5'" S A 5 ? ? 1.519 1.593 -0.074 0.010 N 11 1 N3 S A 5 ? ? C4 S A 5 ? ? 1.303 1.344 -0.041 0.006 N 12 1 C6 S A 5 ? ? N6 S A 5 ? ? 1.419 1.335 0.084 0.008 N 13 1 "O3'" S A 5 ? ? P S G 6 ? ? 1.528 1.607 -0.079 0.012 Y 14 1 P S C 7 ? ? "O5'" S C 7 ? ? 1.498 1.593 -0.095 0.010 N 15 1 C2 S C 7 ? ? N3 S C 7 ? ? 1.437 1.353 0.084 0.008 N 16 1 C5 S C 7 ? ? C6 S C 7 ? ? 1.393 1.339 0.054 0.008 N 17 1 C6 S G 8 ? ? N1 S G 8 ? ? 1.346 1.391 -0.045 0.007 N 18 1 N1 S G 9 ? ? C2 S G 9 ? ? 1.318 1.373 -0.055 0.008 N 19 1 P A C 1 ? ? OP2 A C 1 ? ? 1.589 1.485 0.104 0.017 N 20 1 P A C 2 ? ? "O5'" A C 2 ? ? 1.500 1.593 -0.093 0.010 N 21 1 C5 A C 2 ? ? C6 A C 2 ? ? 1.399 1.339 0.060 0.008 N 22 1 P A G 3 ? ? "O5'" A G 3 ? ? 1.503 1.593 -0.090 0.010 N 23 1 C6 A G 3 ? ? N1 A G 3 ? ? 1.344 1.391 -0.047 0.007 N 24 1 N7 A G 3 ? ? C8 A G 3 ? ? 1.364 1.305 0.059 0.006 N 25 1 P A C 4 ? ? OP1 A C 4 ? ? 1.601 1.485 0.116 0.017 N 26 1 P A C 4 ? ? "O5'" A C 4 ? ? 1.514 1.593 -0.079 0.010 N 27 1 N1 A C 4 ? ? C6 A C 4 ? ? 1.311 1.367 -0.056 0.006 N 28 1 N9 A A 5 ? ? C4 A A 5 ? ? 1.327 1.374 -0.047 0.006 N 29 1 "O3'" A A 5 ? ? P A G 6 ? ? 1.514 1.607 -0.093 0.012 Y 30 1 C2 A G 6 ? ? N3 A G 6 ? ? 1.383 1.323 0.060 0.008 N 31 1 C5 A G 6 ? ? N7 A G 6 ? ? 1.327 1.388 -0.061 0.006 N 32 1 N7 A G 6 ? ? C8 A G 6 ? ? 1.388 1.305 0.083 0.006 N 33 1 C8 A G 6 ? ? N9 A G 6 ? ? 1.299 1.374 -0.075 0.007 N 34 1 N9 A G 6 ? ? C4 A G 6 ? ? 1.429 1.375 0.054 0.008 N 35 1 N1 A C 7 ? ? C6 A C 7 ? ? 1.329 1.367 -0.038 0.006 N 36 1 C4 A C 7 ? ? C5 A C 7 ? ? 1.357 1.425 -0.068 0.008 N 37 1 C4 A G 8 ? ? C5 A G 8 ? ? 1.462 1.379 0.083 0.007 N 38 1 C6 A G 9 ? ? N1 A G 9 ? ? 1.345 1.391 -0.046 0.007 N 39 1 C5 A G 9 ? ? N7 A G 9 ? ? 1.344 1.388 -0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 S C 1 ? ? P S C 1 ? ? OP2 S C 1 ? ? 106.11 119.60 -13.49 1.50 N 2 1 "O5'" S C 1 ? ? P S C 1 ? ? OP1 S C 1 ? ? 98.87 105.70 -6.83 0.90 N 3 1 C2 S C 1 ? ? N3 S C 1 ? ? C4 S C 1 ? ? 123.81 119.90 3.91 0.50 N 4 1 OP1 S C 2 ? ? P S C 2 ? ? OP2 S C 2 ? ? 107.41 119.60 -12.19 1.50 N 5 1 "O5'" S C 2 ? ? "C5'" S C 2 ? ? "C4'" S C 2 ? ? 104.25 109.40 -5.15 0.80 N 6 1 N1 S C 2 ? ? C2 S C 2 ? ? O2 S C 2 ? ? 123.67 118.90 4.77 0.60 N 7 1 "C3'" S G 3 ? ? "C2'" S G 3 ? ? "C1'" S G 3 ? ? 96.76 101.30 -4.54 0.70 N 8 1 N3 S G 3 ? ? C4 S G 3 ? ? C5 S G 3 ? ? 123.37 128.60 -5.23 0.50 N 9 1 C5 S G 3 ? ? C6 S G 3 ? ? O6 S G 3 ? ? 122.99 128.60 -5.61 0.60 N 10 1 C2 S C 4 ? ? N3 S C 4 ? ? C4 S C 4 ? ? 124.82 119.90 4.92 0.50 N 11 1 N1 S C 4 ? ? C2 S C 4 ? ? O2 S C 4 ? ? 122.69 118.90 3.79 0.60 N 12 1 N3 S C 4 ? ? C4 S C 4 ? ? N4 S C 4 ? ? 123.62 118.00 5.62 0.70 N 13 1 C5 S C 4 ? ? C4 S C 4 ? ? N4 S C 4 ? ? 115.72 120.20 -4.48 0.70 N 14 1 OP1 S A 5 ? ? P S A 5 ? ? OP2 S A 5 ? ? 105.99 119.60 -13.61 1.50 N 15 1 N9 S A 5 ? ? "C1'" S A 5 ? ? "C2'" S A 5 ? ? 104.99 112.00 -7.01 1.10 N 16 1 N1 S A 5 ? ? C2 S A 5 ? ? N3 S A 5 ? ? 124.29 129.30 -5.01 0.50 N 17 1 C2 S A 5 ? ? N3 S A 5 ? ? C4 S A 5 ? ? 116.30 110.60 5.70 0.50 N 18 1 C4 S A 5 ? ? C5 S A 5 ? ? C6 S A 5 ? ? 113.93 117.00 -3.07 0.50 N 19 1 C5 S A 5 ? ? C6 S A 5 ? ? N1 S A 5 ? ? 121.57 117.70 3.87 0.50 N 20 1 N9 S A 5 ? ? C4 S A 5 ? ? C5 S A 5 ? ? 101.83 105.80 -3.97 0.40 N 21 1 N3 S A 5 ? ? C4 S A 5 ? ? N9 S A 5 ? ? 132.94 127.40 5.54 0.80 N 22 1 C2 S G 6 ? ? N3 S G 6 ? ? C4 S G 6 ? ? 115.35 111.90 3.45 0.50 N 23 1 N3 S G 6 ? ? C4 S G 6 ? ? C5 S G 6 ? ? 123.57 128.60 -5.03 0.50 N 24 1 C4 S G 6 ? ? C5 S G 6 ? ? N7 S G 6 ? ? 107.92 110.80 -2.88 0.40 N 25 1 C8 S G 6 ? ? N9 S G 6 ? ? C4 S G 6 ? ? 103.41 106.40 -2.99 0.40 N 26 1 N9 S G 6 ? ? C4 S G 6 ? ? C5 S G 6 ? ? 108.03 105.40 2.63 0.40 N 27 1 N1 S G 6 ? ? C6 S G 6 ? ? O6 S G 6 ? ? 125.85 119.90 5.95 0.60 N 28 1 C5 S G 6 ? ? C6 S G 6 ? ? O6 S G 6 ? ? 124.06 128.60 -4.54 0.60 N 29 1 OP1 S C 7 ? ? P S C 7 ? ? OP2 S C 7 ? ? 109.56 119.60 -10.04 1.50 N 30 1 "O4'" S C 7 ? ? "C1'" S C 7 ? ? N1 S C 7 ? ? 112.89 108.50 4.39 0.70 N 31 1 C6 S G 8 ? ? N1 S G 8 ? ? C2 S G 8 ? ? 129.17 125.10 4.07 0.60 N 32 1 N3 S G 9 ? ? C4 S G 9 ? ? C5 S G 9 ? ? 124.70 128.60 -3.90 0.50 N 33 1 C4 S G 9 ? ? C5 S G 9 ? ? N7 S G 9 ? ? 107.34 110.80 -3.46 0.40 N 34 1 OP1 A C 1 ? ? P A C 1 ? ? OP2 A C 1 ? ? 105.99 119.60 -13.61 1.50 N 35 1 C6 A C 1 ? ? N1 A C 1 ? ? C2 A C 1 ? ? 123.63 120.30 3.33 0.40 N 36 1 N1 A C 1 ? ? C2 A C 1 ? ? N3 A C 1 ? ? 114.89 119.20 -4.31 0.70 N 37 1 C2 A C 1 ? ? N3 A C 1 ? ? C4 A C 1 ? ? 127.06 119.90 7.16 0.50 N 38 1 N3 A C 1 ? ? C4 A C 1 ? ? C5 A C 1 ? ? 116.02 121.90 -5.88 0.40 N 39 1 N3 A C 1 ? ? C4 A C 1 ? ? N4 A C 1 ? ? 123.40 118.00 5.40 0.70 N 40 1 OP1 A G 3 ? ? P A G 3 ? ? OP2 A G 3 ? ? 110.42 119.60 -9.18 1.50 N 41 1 N3 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 121.68 128.60 -6.92 0.50 N 42 1 C4 A G 3 ? ? C5 A G 3 ? ? C6 A G 3 ? ? 123.14 118.80 4.34 0.60 N 43 1 N7 A G 3 ? ? C8 A G 3 ? ? N9 A G 3 ? ? 117.54 113.10 4.44 0.50 N 44 1 C8 A G 3 ? ? N9 A G 3 ? ? C4 A G 3 ? ? 101.55 106.40 -4.85 0.40 N 45 1 N9 A G 3 ? ? C4 A G 3 ? ? C5 A G 3 ? ? 109.84 105.40 4.44 0.40 N 46 1 OP1 A C 4 ? ? P A C 4 ? ? OP2 A C 4 ? ? 109.31 119.60 -10.29 1.50 N 47 1 N1 A C 4 ? ? C2 A C 4 ? ? N3 A C 4 ? ? 113.58 119.20 -5.62 0.70 N 48 1 C2 A C 4 ? ? N3 A C 4 ? ? C4 A C 4 ? ? 127.53 119.90 7.63 0.50 N 49 1 N3 A C 4 ? ? C4 A C 4 ? ? C5 A C 4 ? ? 116.47 121.90 -5.43 0.40 N 50 1 N3 A C 4 ? ? C2 A C 4 ? ? O2 A C 4 ? ? 126.58 121.90 4.68 0.70 N 51 1 N3 A C 4 ? ? C4 A C 4 ? ? N4 A C 4 ? ? 122.99 118.00 4.99 0.70 N 52 1 "O3'" A C 4 ? ? P A A 5 ? ? "O5'" A A 5 ? ? 116.94 104.00 12.94 1.90 Y 53 1 OP1 A A 5 ? ? P A A 5 ? ? OP2 A A 5 ? ? 110.25 119.60 -9.35 1.50 N 54 1 "C5'" A A 5 ? ? "C4'" A A 5 ? ? "O4'" A A 5 ? ? 118.54 109.80 8.74 0.90 N 55 1 C2 A A 5 ? ? N3 A A 5 ? ? C4 A A 5 ? ? 119.33 110.60 8.73 0.50 N 56 1 N3 A A 5 ? ? C4 A A 5 ? ? C5 A A 5 ? ? 117.13 126.80 -9.67 0.70 N 57 1 C4 A A 5 ? ? C5 A A 5 ? ? C6 A A 5 ? ? 120.27 117.00 3.27 0.50 N 58 1 C4 A A 5 ? ? C5 A A 5 ? ? N7 A A 5 ? ? 104.44 110.70 -6.26 0.50 N 59 1 C5 A A 5 ? ? N7 A A 5 ? ? C8 A A 5 ? ? 107.24 103.90 3.34 0.50 N 60 1 N9 A A 5 ? ? C4 A A 5 ? ? C5 A A 5 ? ? 110.29 105.80 4.49 0.40 N 61 1 N3 A A 5 ? ? C4 A A 5 ? ? N9 A A 5 ? ? 132.51 127.40 5.11 0.80 N 62 1 C2 A G 6 ? ? N3 A G 6 ? ? C4 A G 6 ? ? 118.39 111.90 6.49 0.50 N 63 1 N3 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 122.02 128.60 -6.58 0.50 N 64 1 C5 A G 6 ? ? C6 A G 6 ? ? N1 A G 6 ? ? 114.93 111.50 3.43 0.50 N 65 1 N7 A G 6 ? ? C8 A G 6 ? ? N9 A G 6 ? ? 117.39 113.10 4.29 0.50 N 66 1 C8 A G 6 ? ? N9 A G 6 ? ? C4 A G 6 ? ? 101.56 106.40 -4.84 0.40 N 67 1 N9 A G 6 ? ? C4 A G 6 ? ? C5 A G 6 ? ? 107.82 105.40 2.42 0.40 N 68 1 N3 A G 6 ? ? C4 A G 6 ? ? N9 A G 6 ? ? 130.15 126.00 4.15 0.60 N 69 1 C8 A G 6 ? ? N9 A G 6 ? ? "C1'" A G 6 ? ? 135.88 127.00 8.88 1.30 N 70 1 "C5'" A C 7 ? ? "C4'" A C 7 ? ? "O4'" A C 7 ? ? 118.00 109.80 8.20 0.90 N 71 1 N1 A C 7 ? ? C2 A C 7 ? ? N3 A C 7 ? ? 114.81 119.20 -4.39 0.70 N 72 1 C2 A C 7 ? ? N3 A C 7 ? ? C4 A C 7 ? ? 122.97 119.90 3.07 0.50 N 73 1 C4 A C 7 ? ? C5 A C 7 ? ? C6 A C 7 ? ? 113.58 117.40 -3.82 0.50 N 74 1 C5 A C 7 ? ? C6 A C 7 ? ? N1 A C 7 ? ? 125.57 121.00 4.57 0.50 N 75 1 N1 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 122.52 118.90 3.62 0.60 N 76 1 C5 A C 7 ? ? C4 A C 7 ? ? N4 A C 7 ? ? 115.81 120.20 -4.39 0.70 N 77 1 "C1'" A G 8 ? ? "O4'" A G 8 ? ? "C4'" A G 8 ? ? 116.42 109.90 6.52 0.80 N 78 1 "O4'" A G 8 ? ? "C1'" A G 8 ? ? N9 A G 8 ? ? 114.06 108.50 5.56 0.70 N 79 1 C2 A G 8 ? ? N3 A G 8 ? ? C4 A G 8 ? ? 117.03 111.90 5.13 0.50 N 80 1 N3 A G 8 ? ? C4 A G 8 ? ? C5 A G 8 ? ? 124.28 128.60 -4.32 0.50 N 81 1 C5 A G 8 ? ? C6 A G 8 ? ? N1 A G 8 ? ? 115.67 111.50 4.17 0.50 N 82 1 N7 A G 8 ? ? C8 A G 8 ? ? N9 A G 8 ? ? 118.19 113.10 5.09 0.50 N 83 1 C8 A G 8 ? ? N9 A G 8 ? ? C4 A G 8 ? ? 103.90 106.40 -2.50 0.40 N 84 1 N3 A G 8 ? ? C4 A G 8 ? ? N9 A G 8 ? ? 130.43 126.00 4.43 0.60 N 85 1 C2 A G 9 ? ? N3 A G 9 ? ? C4 A G 9 ? ? 115.07 111.90 3.17 0.50 N 86 1 N3 A G 9 ? ? C4 A G 9 ? ? C5 A G 9 ? ? 124.59 128.60 -4.01 0.50 N 87 1 C5 A G 9 ? ? C6 A G 9 ? ? N1 A G 9 ? ? 115.42 111.50 3.92 0.50 N 88 1 C4 A G 9 ? ? C5 A G 9 ? ? N7 A G 9 ? ? 108.28 110.80 -2.52 0.40 N 89 1 C8 A G 9 ? ? N9 A G 9 ? ? C4 A G 9 ? ? 103.96 106.40 -2.44 0.40 N 90 1 C6 A G 9 ? ? C5 A G 9 ? ? N7 A G 9 ? ? 134.12 130.40 3.72 0.60 N 91 1 N1 A G 9 ? ? C6 A G 9 ? ? O6 A G 9 ? ? 116.12 119.90 -3.78 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A S 5 ? ? 0.055 'SIDE CHAIN' 2 1 G S 8 ? ? 0.056 'SIDE CHAIN' 3 1 G S 9 ? ? 0.058 'SIDE CHAIN' 4 1 G A 6 ? ? 0.066 'SIDE CHAIN' 5 1 G A 8 ? ? 0.071 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MS5 'a-form double helix' 2MS5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 9 1_555 0.318 -0.114 -0.253 0.063 -1.495 -0.893 1 S_C1:G9_A S 1 ? A 9 ? 19 1 1 A C 2 1_555 B G 8 1_555 0.058 -0.205 -0.530 1.508 -1.926 -3.154 2 S_C2:G8_A S 2 ? A 8 ? 19 1 1 A G 3 1_555 B C 7 1_555 -0.236 -0.191 -0.134 -1.788 -1.225 -2.075 3 S_G3:C7_A S 3 ? A 7 ? 19 1 1 A C 4 1_555 B G 6 1_555 0.113 -0.155 0.049 4.929 -0.544 -1.110 4 S_C4:G6_A S 4 ? A 6 ? 19 1 1 A A 5 1_555 B A 5 1_555 -1.606 1.437 0.295 -0.340 -11.278 -14.099 5 S_A5:A5_A S 5 ? A 5 ? ? 1 1 A G 6 1_555 B C 4 1_555 -0.261 -0.158 -0.103 -0.035 -0.231 -1.975 6 S_G6:C4_A S 6 ? A 4 ? 19 1 1 A C 7 1_555 B G 3 1_555 0.210 -0.184 -0.515 3.694 -3.224 0.659 7 S_C7:G3_A S 7 ? A 3 ? 19 1 1 A G 8 1_555 B C 2 1_555 0.014 -0.149 -0.503 -5.605 -3.888 -1.745 8 S_G8:C2_A S 8 ? A 2 ? 19 1 1 A G 9 1_555 B C 1 1_555 -0.140 -0.111 -0.175 -0.522 -2.180 0.704 9 S_G9:C1_A S 9 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 9 1_555 A C 2 1_555 B G 8 1_555 -0.062 -1.335 3.272 3.256 9.662 29.698 -4.176 0.690 2.694 18.189 -6.130 31.362 1 SS_C1C2:G8G9_AA S 1 ? A 9 ? S 2 ? A 8 ? 1 A C 2 1_555 B G 8 1_555 A G 3 1_555 B C 7 1_555 0.081 -1.337 3.451 -2.378 11.206 29.362 -4.524 -0.586 2.753 21.122 4.482 31.471 2 SS_C2G3:C7G8_AA S 2 ? A 8 ? S 3 ? A 7 ? 1 A G 3 1_555 B C 7 1_555 A C 4 1_555 B G 6 1_555 0.029 -1.451 3.108 -1.576 7.564 33.952 -3.468 -0.265 2.728 12.748 2.656 34.795 3 SS_G3C4:G6C7_AA S 3 ? A 7 ? S 4 ? A 6 ? 1 A C 4 1_555 B G 6 1_555 A A 5 1_555 B A 5 1_555 -0.246 -1.470 3.445 1.337 10.352 21.930 -6.620 0.989 2.485 25.440 -3.287 24.260 4 SS_C4A5:A5G6_AA S 4 ? A 6 ? S 5 ? A 5 ? 1 A A 5 1_555 B A 5 1_555 A G 6 1_555 B C 4 1_555 0.340 -1.624 3.273 -1.883 8.599 38.894 -3.326 -0.706 2.845 12.716 2.784 39.840 5 SS_A5G6:C4A5_AA S 5 ? A 5 ? S 6 ? A 4 ? 1 A G 6 1_555 B C 4 1_555 A C 7 1_555 B G 3 1_555 0.043 -1.322 3.230 4.477 8.526 33.864 -3.385 0.557 2.808 14.282 -7.500 35.168 6 SS_G6C7:G3C4_AA S 6 ? A 4 ? S 7 ? A 3 ? 1 A C 7 1_555 B G 3 1_555 A G 8 1_555 B C 2 1_555 -0.072 -1.104 3.712 -0.032 11.191 30.661 -4.069 0.122 3.127 20.333 0.058 32.594 7 SS_C7G8:C2G3_AA S 7 ? A 3 ? S 8 ? A 2 ? 1 A G 8 1_555 B C 2 1_555 A G 9 1_555 B C 1 1_555 0.133 -1.336 3.189 -2.115 8.995 29.822 -4.054 -0.616 2.667 16.973 3.991 31.190 8 SS_G8G9:C1C2_AA S 8 ? A 2 ? S 9 ? A 1 ? #