data_2MXV # _entry.id 2MXV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104180 RCSB ? ? 2MXV PDB pdb_00002mxv 10.2210/pdb2mxv/pdb 25433 BMRB ? ? D_1000104180 WWPDB ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25433 BMRB unspecified . JCSG-429316 TargetTrack unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MXV _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-01-16 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serrano, P.' 1 'Wuthrich, K.' 2 'Geralt, M.' 3 'Joint Center for Structural Genomics (JCSG)' 4 'Partnership for T-Cell Biology (TCELL)' 5 # _citation.id primary _citation.title 'NMR structure of the first Zinc Finger domain of RBM10' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serrano, P.' 1 ? primary 'Geralt, M.' 2 ? primary 'Wuthrich, K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA-binding protein 10' 4957.840 1 ? ? 'Zinc Finger domain (UNP residues 211-250)' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'G patch domain-containing protein 9, RNA-binding motif protein 10, RNA-binding protein S1-1, S1-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GHMPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLG _entity_poly.pdbx_seq_one_letter_code_can GHMPKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-429316 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 PRO n 1 5 LYS n 1 6 ILE n 1 7 ASN n 1 8 GLU n 1 9 ASP n 1 10 TRP n 1 11 LEU n 1 12 CYS n 1 13 ASN n 1 14 LYS n 1 15 CYS n 1 16 GLY n 1 17 VAL n 1 18 GLN n 1 19 ASN n 1 20 PHE n 1 21 LYS n 1 22 ARG n 1 23 ARG n 1 24 GLU n 1 25 LYS n 1 26 CYS n 1 27 PHE n 1 28 LYS n 1 29 CYS n 1 30 GLY n 1 31 VAL n 1 32 PRO n 1 33 LYS n 1 34 SER n 1 35 GLU n 1 36 ALA n 1 37 GLU n 1 38 GLN n 1 39 LYS n 1 40 LEU n 1 41 PRO n 1 42 LEU n 1 43 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RBM10, DXS8237E, GPATC9, GPATCH9, KIAA0122' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM10_HUMAN _struct_ref.pdbx_db_accession P98175 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLG _struct_ref.pdbx_align_begin 211 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MXV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P98175 _struct_ref_seq.db_align_beg 211 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MXV GLY A 1 ? UNP P98175 ? ? 'expression tag' 1 1 1 2MXV HIS A 2 ? UNP P98175 ? ? 'expression tag' 2 2 1 2MXV MET A 3 ? UNP P98175 ? ? 'expression tag' 3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 'APSY 4D-HACANH' 1 2 1 'APSY 5D-HACACONH' 1 3 1 'APSY 5D-CBCACONH' 1 4 1 '2D 1H-15N HSQC' 1 5 1 '3D 1H-15N NOESY' 1 6 1 '3D 1H-13C NOESY aliphatic' 1 7 1 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.0798 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1.0 mM [U-99% 13C; U-98% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MXV _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 80 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MXV _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MXV _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, A.T. et al.' refinement CNS ? 1 'Guntert, Mumenthaler, and Wuthrich' 'structure solution' CYANA ? 2 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 3 'Bruker Biospin' collection TopSpin ? 4 'Bruker Biospin' processing TopSpin ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MXV _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MXV _struct.title 'NMR structure of the first Zinc Finger domain of RBM10' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MXV _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;Zinc Finger, Splicing, RNA binding domain, RNA BINDING PROTEIN, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for T-Cell Biology, TCELL ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 12 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 12 A ZN 101 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc2 metalc ? ? A CYS 15 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 15 A ZN 101 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc3 metalc ? ? A CYS 26 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 26 A ZN 101 1_555 ? ? ? ? ? ? ? 2.667 ? ? metalc4 metalc ? ? A CYS 29 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 29 A ZN 101 1_555 ? ? ? ? ? ? ? 2.841 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ZN _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE ZN A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 12 ? CYS A 12 . ? 1_555 ? 2 AC1 5 CYS A 15 ? CYS A 15 . ? 1_555 ? 3 AC1 5 CYS A 26 ? CYS A 26 . ? 1_555 ? 4 AC1 5 CYS A 29 ? CYS A 29 . ? 1_555 ? 5 AC1 5 VAL A 31 ? VAL A 31 . ? 1_555 ? # _atom_sites.entry_id 2MXV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O Q S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLY 43 43 43 GLY GLY A . n # loop_ _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center _pdbx_SG_project.project_name 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL PSI:Biology # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ZN _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 70 _pdbx_nonpoly_scheme.pdb_mon_id ZN _pdbx_nonpoly_scheme.auth_mon_id ZN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 15 ? A CYS 15 ? 1_555 81.9 ? 2 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 26 ? 1_555 106.5 ? 3 SG ? A CYS 15 ? A CYS 15 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 26 ? A CYS 26 ? 1_555 87.1 ? 4 SG ? A CYS 12 ? A CYS 12 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 99.3 ? 5 SG ? A CYS 15 ? A CYS 15 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 103.0 ? 6 SG ? A CYS 26 ? A CYS 26 ? 1_555 ZN ? B ZN . ? A ZN 101 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 153.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-28 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer 5 2 'Structure model' struct_ref_seq_dif 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' 6 2 'Structure model' '_struct_ref_seq_dif.details' 7 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 1.0 ? mM '[U-99% 13C; U-98% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 50 ? mM ? 1 'sodium azide-4' 5 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MXV _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 398 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 135 _pdbx_nmr_constraints.NOE_long_range_total_count 84 _pdbx_nmr_constraints.NOE_medium_range_total_count 70 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 109 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 3 ? ? -157.31 84.85 2 1 ASP A 9 ? ? 62.79 176.93 3 1 LYS A 14 ? ? -122.10 -68.83 4 1 LYS A 21 ? ? 65.88 -12.30 5 1 LYS A 28 ? ? -133.56 -42.20 6 1 ALA A 36 ? ? -123.51 -154.99 7 1 LYS A 39 ? ? -111.92 -167.16 8 1 PRO A 41 ? ? -55.53 95.84 9 1 LEU A 42 ? ? -171.33 104.90 10 2 PRO A 4 ? ? -65.70 78.12 11 2 LYS A 14 ? ? -93.86 -76.12 12 2 ASN A 19 ? ? -94.20 -159.09 13 2 LYS A 21 ? ? 54.43 -71.56 14 2 ARG A 23 ? ? -53.90 108.20 15 2 LYS A 28 ? ? -152.01 -45.19 16 2 PRO A 41 ? ? -69.12 71.90 17 3 ASP A 9 ? ? 63.62 -164.53 18 3 LYS A 14 ? ? -80.97 -73.16 19 3 LYS A 28 ? ? -156.94 -42.40 20 3 CYS A 29 ? ? -75.25 -73.69 21 3 ALA A 36 ? ? -154.60 -67.18 22 3 PRO A 41 ? ? -70.80 -165.69 23 4 LYS A 5 ? ? -161.55 89.92 24 4 ILE A 6 ? ? 73.99 -48.79 25 4 ASN A 7 ? ? -67.03 93.52 26 4 ASP A 9 ? ? 59.48 -168.46 27 4 ASN A 19 ? ? -85.26 -154.31 28 4 LYS A 21 ? ? 55.10 -69.45 29 4 ARG A 23 ? ? -55.38 98.83 30 4 ALA A 36 ? ? -99.35 -69.00 31 5 HIS A 2 ? ? -92.52 -60.34 32 5 MET A 3 ? ? 60.95 85.43 33 5 LYS A 5 ? ? 65.21 159.92 34 5 ILE A 6 ? ? 55.89 12.36 35 5 LYS A 14 ? ? -90.99 -75.65 36 5 PHE A 20 ? ? -84.09 39.10 37 5 LYS A 21 ? ? 46.32 13.72 38 5 ARG A 22 ? ? -140.90 -33.59 39 5 ARG A 23 ? ? -55.50 105.54 40 5 LYS A 28 ? ? -139.53 -40.97 41 5 PRO A 41 ? ? -48.74 97.05 42 5 LEU A 42 ? ? -143.55 -58.84 43 6 ASN A 7 ? ? 44.39 89.16 44 6 ASP A 9 ? ? 71.11 160.03 45 6 LYS A 14 ? ? -91.77 -63.59 46 6 ASN A 19 ? ? -113.84 -151.75 47 6 LYS A 21 ? ? -74.10 20.24 48 6 LYS A 28 ? ? -150.70 -32.29 49 6 PRO A 41 ? ? -66.92 80.38 50 7 HIS A 2 ? ? -90.83 58.61 51 7 LYS A 14 ? ? -127.80 -70.23 52 7 PHE A 20 ? ? -103.13 40.45 53 7 LYS A 21 ? ? 54.50 -51.38 54 7 ARG A 22 ? ? -73.15 43.37 55 7 LYS A 28 ? ? -140.05 -39.63 56 7 GLU A 37 ? ? 62.40 -164.26 57 8 HIS A 2 ? ? 67.97 150.62 58 8 LYS A 5 ? ? 69.32 115.36 59 8 ILE A 6 ? ? -83.14 31.37 60 8 LYS A 14 ? ? -86.95 -73.98 61 8 PHE A 20 ? ? -87.24 42.56 62 8 LYS A 21 ? ? 54.67 -59.58 63 8 LYS A 28 ? ? -142.49 -38.52 64 8 GLN A 38 ? ? -61.34 92.11 65 8 LYS A 39 ? ? 70.99 141.79 66 9 LYS A 5 ? ? -63.38 98.74 67 9 LYS A 14 ? ? -82.61 -72.41 68 9 PHE A 20 ? ? -87.28 36.03 69 9 LYS A 21 ? ? 46.97 7.34 70 9 LYS A 28 ? ? -134.48 -40.23 71 9 GLU A 37 ? ? 61.53 66.21 72 10 MET A 3 ? ? -177.86 143.87 73 10 ILE A 6 ? ? 58.77 83.45 74 10 ARG A 22 ? ? -158.79 -31.94 75 10 ARG A 23 ? ? -53.52 104.23 76 10 LYS A 28 ? ? -156.25 -53.29 77 10 CYS A 29 ? ? -66.51 -70.83 78 10 LEU A 42 ? ? 64.95 -165.20 79 11 ASN A 7 ? ? -166.37 -63.65 80 11 LYS A 14 ? ? -93.99 -67.18 81 11 PHE A 20 ? ? -82.00 42.25 82 11 LYS A 21 ? ? 54.05 -64.08 83 11 PHE A 27 ? ? -68.66 2.17 84 11 LYS A 28 ? ? -154.80 -33.99 85 11 LEU A 40 ? ? 65.55 145.24 86 12 HIS A 2 ? ? -167.71 45.63 87 12 MET A 3 ? ? 50.98 87.90 88 12 LYS A 5 ? ? -167.18 107.06 89 12 LYS A 21 ? ? 63.95 -69.33 90 12 ARG A 23 ? ? -58.05 103.09 91 12 LYS A 28 ? ? -132.32 -43.32 92 12 ALA A 36 ? ? -76.34 -164.95 93 12 GLU A 37 ? ? 66.29 -166.57 94 12 LEU A 40 ? ? 65.51 142.38 95 13 ASP A 9 ? ? 63.03 159.07 96 13 LYS A 14 ? ? -113.56 -71.20 97 13 ASN A 19 ? ? -101.65 -149.84 98 13 LYS A 21 ? ? 60.00 -60.63 99 13 ARG A 23 ? ? -57.39 107.27 100 13 LYS A 28 ? ? -145.51 -40.44 101 13 ALA A 36 ? ? -170.62 -40.94 102 13 LYS A 39 ? ? 61.63 78.31 103 13 PRO A 41 ? ? -67.33 79.82 104 14 HIS A 2 ? ? 61.29 61.79 105 14 ASN A 7 ? ? 66.42 165.92 106 14 ASP A 9 ? ? 64.27 -177.18 107 14 LYS A 14 ? ? -80.70 -73.00 108 14 ARG A 23 ? ? -66.04 97.99 109 14 LYS A 28 ? ? -136.79 -38.70 110 14 GLU A 37 ? ? 62.78 134.87 111 14 LYS A 39 ? ? 69.16 116.66 112 15 LYS A 21 ? ? 55.02 -61.77 113 15 LYS A 28 ? ? -137.06 -36.22 114 15 GLU A 37 ? ? 66.93 179.55 115 16 ASN A 7 ? ? -87.31 -76.37 116 16 LYS A 14 ? ? -84.22 -71.37 117 16 PHE A 20 ? ? -97.74 44.08 118 16 LYS A 21 ? ? 50.46 -68.82 119 16 LYS A 28 ? ? -144.85 -39.12 120 16 GLN A 38 ? ? 53.97 178.62 121 16 PRO A 41 ? ? -45.47 102.99 122 16 LEU A 42 ? ? 70.07 -61.45 123 17 HIS A 2 ? ? 62.41 84.05 124 17 MET A 3 ? ? 64.51 87.63 125 17 ALA A 36 ? ? -85.81 -70.52 126 18 ASN A 7 ? ? -95.25 34.40 127 18 LYS A 14 ? ? -86.95 -73.83 128 18 LYS A 28 ? ? -147.58 -38.88 129 18 GLN A 38 ? ? 71.85 126.47 130 19 ASN A 7 ? ? -87.46 38.17 131 19 LYS A 14 ? ? -85.46 -73.15 132 19 PHE A 20 ? ? -96.03 38.30 133 19 LYS A 21 ? ? 45.32 12.31 134 19 LYS A 28 ? ? -154.34 -34.27 135 20 HIS A 2 ? ? 42.45 72.51 136 20 PRO A 4 ? ? -53.68 90.57 137 20 LYS A 5 ? ? -111.45 -74.69 138 20 ASP A 9 ? ? -69.35 -176.19 139 20 LYS A 14 ? ? -79.11 -70.97 140 20 ASN A 19 ? ? -111.13 -165.37 141 20 LYS A 21 ? ? 64.47 -42.31 142 20 LYS A 28 ? ? -138.82 -44.14 143 20 CYS A 29 ? ? -79.39 -73.28 144 20 ALA A 36 ? ? -144.52 -43.10 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #