HEADER RNA BINDING PROTEIN 16-JAN-15 2MXV TITLE NMR STRUCTURE OF THE FIRST ZINC FINGER DOMAIN OF RBM10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN (UNP RESIDUES 211-250); COMPND 5 SYNONYM: G PATCH DOMAIN-CONTAINING PROTEIN 9, RNA-BINDING MOTIF COMPND 6 PROTEIN 10, RNA-BINDING PROTEIN S1-1, S1-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM10, DXS8237E, GPATC9, GPATCH9, KIAA0122; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ZINC FINGER, SPLICING, RNA BINDING DOMAIN, RNA BINDING PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, PSI-BIOLOGY, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PARTNERSHIP FOR T-CELL BIOLOGY, TCELL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,K.WUTHRICH,M.GERALT,JOINT CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (JCSG),PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 2 14-JUN-23 2MXV 1 REMARK SEQADV REVDAT 1 28-JAN-15 2MXV 0 JRNL AUTH P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE FIRST ZINC FINGER DOMAIN OF RBM10 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000104180. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.0798 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-98% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : APSY 4D-HACANH; APSY 5D REMARK 210 -HACACONH; APSY 5D-CBCACONH; 2D REMARK 210 1H-15N HSQC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 84.85 -157.31 REMARK 500 1 ASP A 9 176.93 62.79 REMARK 500 1 LYS A 14 -68.83 -122.10 REMARK 500 1 LYS A 21 -12.30 65.88 REMARK 500 1 LYS A 28 -42.20 -133.56 REMARK 500 1 ALA A 36 -154.99 -123.51 REMARK 500 1 LYS A 39 -167.16 -111.92 REMARK 500 1 PRO A 41 95.84 -55.53 REMARK 500 1 LEU A 42 104.90 -171.33 REMARK 500 2 PRO A 4 78.12 -65.70 REMARK 500 2 LYS A 14 -76.12 -93.86 REMARK 500 2 ASN A 19 -159.09 -94.20 REMARK 500 2 LYS A 21 -71.56 54.43 REMARK 500 2 ARG A 23 108.20 -53.90 REMARK 500 2 LYS A 28 -45.19 -152.01 REMARK 500 2 PRO A 41 71.90 -69.12 REMARK 500 3 ASP A 9 -164.53 63.62 REMARK 500 3 LYS A 14 -73.16 -80.97 REMARK 500 3 LYS A 28 -42.40 -156.94 REMARK 500 3 CYS A 29 -73.69 -75.25 REMARK 500 3 ALA A 36 -67.18 -154.60 REMARK 500 3 PRO A 41 -165.69 -70.80 REMARK 500 4 LYS A 5 89.92 -161.55 REMARK 500 4 ILE A 6 -48.79 73.99 REMARK 500 4 ASN A 7 93.52 -67.03 REMARK 500 4 ASP A 9 -168.46 59.48 REMARK 500 4 ASN A 19 -154.31 -85.26 REMARK 500 4 LYS A 21 -69.45 55.10 REMARK 500 4 ARG A 23 98.83 -55.38 REMARK 500 4 ALA A 36 -69.00 -99.35 REMARK 500 5 HIS A 2 -60.34 -92.52 REMARK 500 5 MET A 3 85.43 60.95 REMARK 500 5 LYS A 5 159.92 65.21 REMARK 500 5 ILE A 6 12.36 55.89 REMARK 500 5 LYS A 14 -75.65 -90.99 REMARK 500 5 PHE A 20 39.10 -84.09 REMARK 500 5 LYS A 21 13.72 46.32 REMARK 500 5 ARG A 22 -33.59 -140.90 REMARK 500 5 ARG A 23 105.54 -55.50 REMARK 500 5 LYS A 28 -40.97 -139.53 REMARK 500 5 PRO A 41 97.05 -48.74 REMARK 500 5 LEU A 42 -58.84 -143.55 REMARK 500 6 ASN A 7 89.16 44.39 REMARK 500 6 ASP A 9 160.03 71.11 REMARK 500 6 LYS A 14 -63.59 -91.77 REMARK 500 6 ASN A 19 -151.75 -113.84 REMARK 500 6 LYS A 21 20.24 -74.10 REMARK 500 6 LYS A 28 -32.29 -150.70 REMARK 500 6 PRO A 41 80.38 -66.92 REMARK 500 7 HIS A 2 58.61 -90.83 REMARK 500 REMARK 500 THIS ENTRY HAS 144 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 15 SG 81.9 REMARK 620 3 CYS A 26 SG 106.5 87.1 REMARK 620 4 CYS A 29 SG 99.3 103.0 153.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25433 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-429316 RELATED DB: TARGETTRACK DBREF 2MXV A 4 43 UNP P98175 RBM10_HUMAN 211 250 SEQADV 2MXV GLY A 1 UNP P98175 EXPRESSION TAG SEQADV 2MXV HIS A 2 UNP P98175 EXPRESSION TAG SEQADV 2MXV MET A 3 UNP P98175 EXPRESSION TAG SEQRES 1 A 43 GLY HIS MET PRO LYS ILE ASN GLU ASP TRP LEU CYS ASN SEQRES 2 A 43 LYS CYS GLY VAL GLN ASN PHE LYS ARG ARG GLU LYS CYS SEQRES 3 A 43 PHE LYS CYS GLY VAL PRO LYS SER GLU ALA GLU GLN LYS SEQRES 4 A 43 LEU PRO LEU GLY HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ LINK SG CYS A 12 ZN ZN A 101 1555 1555 2.37 LINK SG CYS A 15 ZN ZN A 101 1555 1555 2.54 LINK SG CYS A 26 ZN ZN A 101 1555 1555 2.67 LINK SG CYS A 29 ZN ZN A 101 1555 1555 2.84 SITE 1 AC1 5 CYS A 12 CYS A 15 CYS A 26 CYS A 29 SITE 2 AC1 5 VAL A 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1