HEADER VIRAL PROTEIN 01-MAY-15 2N29 TITLE SOLUTION-STATE NMR STRUCTURE OF VPU CYTOPLASMIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN VPU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN (UNP RESIDUES 28-81); COMPND 5 SYNONYM: U ORF PROTEIN, VIRAL PROTEIN U; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: VPU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET31B+ KEYWDS ALPHA HELIX, VIRAL PROTEIN EXPDTA SOLUTION NMR AUTHOR H.ZHANG,E.C.LIN,Y.TIAN,B.B.DAS,S.J.OPELLA REVDAT 2 14-OCT-15 2N29 1 JRNL REVDAT 1 30-SEP-15 2N29 0 JRNL AUTH H.ZHANG,E.C.LIN,B.B.DAS,Y.TIAN,S.J.OPELLA JRNL TITL STRUCTURAL DETERMINATION OF VIRUS PROTEIN U FROM HIV-1 BY JRNL TITL 2 NMR IN MEMBRANE ENVIRONMENTS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1848 3007 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 26362058 JRNL DOI 10.1016/J.BBAMEM.2015.09.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ANI COORDINATES HAVE BEEN INCLUDED REMARK 3 IN THE RESTRAINT FILE. THE ANI Z AXIS SPECIFIES THE DIRECTION OF REMARK 3 THE NORMAL TO THE PLANE OF THE LIPID BILAYER MEMBRANE. REMARK 4 REMARK 4 2N29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-15. REMARK 100 THE RCSB ID CODE IS RCSB104330. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] VPU REMARK 210 CYTOPLASMIC DOMAIN, 0.5 MM [U- REMARK 210 100% 13C; U-100% 15N] VPU REMARK 210 CYTOPLASMIC DOMAIN, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D_15N/ REMARK 210 1N_HSQC; 2D_15N/1N_HSQCIPAP; 3D_ REMARK 210 HNCA; 3D_HCCCONH; 3D_CCCONH; 3D_ REMARK 210 15N/13C'/13C; 3D_HNCO; 3D_HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 20 H ASP A 24 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 58.62 -93.93 REMARK 500 LYS A 4 99.44 38.17 REMARK 500 ILE A 5 -145.25 34.23 REMARK 500 LEU A 6 -41.12 73.40 REMARK 500 ARG A 9 -7.90 -40.71 REMARK 500 SER A 25 -42.67 -178.01 REMARK 500 GLU A 28 -71.43 60.09 REMARK 500 SER A 29 57.89 83.51 REMARK 500 HIS A 45 87.65 39.53 REMARK 500 PRO A 48 34.96 -64.77 REMARK 500 VAL A 51 -47.48 70.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25592 RELATED DB: BMRB REMARK 900 RELATED ID: 2N28 RELATED DB: PDB DBREF 2N29 A 1 54 UNP P69700 VPU_HV1H3 28 81 SEQADV 2N29 LEU A 39 UNP P69700 MET 66 CONFLICT SEQADV 2N29 LEU A 43 UNP P69700 MET 70 CONFLICT SEQRES 1 A 54 GLU TYR ARG LYS ILE LEU ARG GLN ARG LYS ILE ASP ARG SEQRES 2 A 54 LEU ILE ASP ARG LEU ILE GLU ARG ALA GLU ASP SER GLY SEQRES 3 A 54 ASN GLU SER GLU GLY GLU ILE SER ALA LEU VAL GLU LEU SEQRES 4 A 54 GLY VAL GLU LEU GLY HIS HIS ALA PRO TRP ASP VAL ASP SEQRES 5 A 54 ASP LEU HELIX 1 1 GLN A 8 ASP A 12 5 5 HELIX 2 2 ARG A 13 ASP A 24 1 12 HELIX 3 3 SER A 29 LEU A 43 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000