data_2N3T # _entry.id 2N3T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104386 RCSB ? ? 2N3T PDB pdb_00002n3t 10.2210/pdb2n3t/pdb 25657 BMRB ? ? D_1000104386 WWPDB ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 25657 BMRB unspecified . 2N3U PDB unspecified . 2N3V PDB unspecified . 2N3W PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2N3T _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2015-06-10 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, X.' 1 'Walters, K.J.' 2 # _citation.id primary _citation.title 'Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome.' _citation.journal_abbrev Science _citation.journal_volume 351 _citation.page_first ? _citation.page_last ? _citation.year 2016 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 1095-9203 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 26912900 _citation.pdbx_database_id_DOI 10.1126/science.aad9421 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shi, Y.' 1 ? primary 'Chen, X.' 2 ? primary 'Elsasser, S.' 3 ? primary 'Stocks, B.B.' 4 ? primary 'Tian, G.' 5 ? primary 'Lee, B.H.' 6 ? primary 'Shi, Y.' 7 ? primary 'Zhang, N.' 8 ? primary 'de Poot, S.A.' 9 ? primary 'Tuebing, F.' 10 ? primary 'Sun, S.' 11 ? primary 'Vannoy, J.' 12 ? primary 'Tarasov, S.G.' 13 ? primary 'Engen, J.R.' 14 ? primary 'Finley, D.' 15 ? primary 'Walters, K.J.' 16 ? # _cell.entry_id 2N3T _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2N3T _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '26S proteasome regulatory subunit RPN1' _entity.formula_weight 13636.592 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 482-612' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HMG-CoA reductase degradation protein 2, Proteasome non-ATPase subunit 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DTKISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLALAHVFVGTCNGDITTSIMDNFLERTAIELKTD WVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTG ; _entity_poly.pdbx_seq_one_letter_code_can ;DTKISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLALAHVFVGTCNGDITTSIMDNFLERTAIELKTD WVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 THR n 1 3 LYS n 1 4 ILE n 1 5 SER n 1 6 SER n 1 7 ALA n 1 8 ALA n 1 9 ILE n 1 10 LEU n 1 11 GLY n 1 12 LEU n 1 13 GLY n 1 14 ILE n 1 15 ALA n 1 16 PHE n 1 17 ALA n 1 18 GLY n 1 19 SER n 1 20 LYS n 1 21 ASN n 1 22 ASP n 1 23 GLU n 1 24 VAL n 1 25 LEU n 1 26 GLY n 1 27 LEU n 1 28 LEU n 1 29 LEU n 1 30 PRO n 1 31 ILE n 1 32 ALA n 1 33 ALA n 1 34 SER n 1 35 THR n 1 36 ASP n 1 37 LEU n 1 38 PRO n 1 39 ILE n 1 40 GLU n 1 41 THR n 1 42 ALA n 1 43 ALA n 1 44 MET n 1 45 ALA n 1 46 SER n 1 47 LEU n 1 48 ALA n 1 49 LEU n 1 50 ALA n 1 51 HIS n 1 52 VAL n 1 53 PHE n 1 54 VAL n 1 55 GLY n 1 56 THR n 1 57 CYS n 1 58 ASN n 1 59 GLY n 1 60 ASP n 1 61 ILE n 1 62 THR n 1 63 THR n 1 64 SER n 1 65 ILE n 1 66 MET n 1 67 ASP n 1 68 ASN n 1 69 PHE n 1 70 LEU n 1 71 GLU n 1 72 ARG n 1 73 THR n 1 74 ALA n 1 75 ILE n 1 76 GLU n 1 77 LEU n 1 78 LYS n 1 79 THR n 1 80 ASP n 1 81 TRP n 1 82 VAL n 1 83 ARG n 1 84 PHE n 1 85 LEU n 1 86 ALA n 1 87 LEU n 1 88 ALA n 1 89 LEU n 1 90 GLY n 1 91 ILE n 1 92 LEU n 1 93 TYR n 1 94 MET n 1 95 GLY n 1 96 GLN n 1 97 GLY n 1 98 GLU n 1 99 GLN n 1 100 VAL n 1 101 ASP n 1 102 ASP n 1 103 VAL n 1 104 LEU n 1 105 GLU n 1 106 THR n 1 107 ILE n 1 108 SER n 1 109 ALA n 1 110 ILE n 1 111 GLU n 1 112 HIS n 1 113 PRO n 1 114 MET n 1 115 THR n 1 116 SER n 1 117 ALA n 1 118 ILE n 1 119 GLU n 1 120 VAL n 1 121 LEU n 1 122 VAL n 1 123 GLY n 1 124 SER n 1 125 CYS n 1 126 ALA n 1 127 TYR n 1 128 THR n 1 129 GLY n 1 130 THR n 1 131 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RPN1, HRD2, NAS1, RPD1, YHR027C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name Pgex4t1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RPN1_YEAST _struct_ref.pdbx_db_accession P38764 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DTKISSAAILGLGIAFAGSKNDEVLGLLLPIAASTDLPIETAAMASLALAHVFVGTCNGDITTSIMDNFLERTAIELKTD WVRFLALALGILYMGQGEQVDDVLETISAIEHPMTSAIEVLVGSCAYTGTG ; _struct_ref.pdbx_align_begin 482 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2N3T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P38764 _struct_ref_seq.db_align_beg 482 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 612 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 482 _struct_ref_seq.pdbx_auth_seq_align_end 612 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 3 '2D 1H-13C HSQC' 1 3 1 '3D HNCACB' 1 4 1 '3D HNCA' 1 5 1 '3D HN(CO)CA' 1 6 1 '3D HNCO' 1 7 3 '3D HCCH-TOCSY' 1 8 2 '3D 1H-15N NOESY' 1 9 3 '3D 1H-13C NOESY aliphatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] protein, 50 mM HEPES, 50 mM sodium chloride, 2 mM DTT, 1 mM EDTA, 0.1 % sodium azide, 95% H2O/5% D2O ; 1 '95% H2O/5% D2O' '0.7 mM [U-100% 15N] protein, 50 mM HEPES, 50 mM sodium chloride, 2 mM DTT, 1 mM EDTA, 0.1 % sodium azide, 95% H2O/5% D2O' 2 '95% H2O/5% D2O' '0.7 mM [U-100% 13C] protein, 50 mM HEPES, 50 mM sodium chloride, 2 mM DTT, 1 mM EDTA, 0.1 % sodium azide, 100% D2O' 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 850 Bruker AVANCE 1 'Bruker Avance' 900 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' 800 Varian INOVA 4 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2N3T _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2N3T _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 1.8 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 5.5 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2N3T _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 'Bartels et al.' 'chemical shift assignment' XEASY ? 3 'Bartels et al.' 'peak picking' XEASY ? 4 'Bartels et al.' 'data analysis' XEASY ? 5 'Cornilescu, Delaglio and Bax' 'data analysis' TALOS ? 6 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 7 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2N3T _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2N3T _struct.title 'Solution structure of the Rpn1 substrate receptor site toroid 1 (T1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2N3T _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? PHE A 16 ? LYS A 484 PHE A 497 1 ? 14 HELX_P HELX_P2 2 ALA A 17 ? LYS A 20 ? ALA A 498 LYS A 501 5 ? 4 HELX_P HELX_P3 3 ASN A 21 ? ALA A 33 ? ASN A 502 ALA A 514 1 ? 13 HELX_P HELX_P4 4 PRO A 38 ? VAL A 54 ? PRO A 519 VAL A 535 1 ? 17 HELX_P HELX_P5 5 ASN A 58 ? ARG A 72 ? ASN A 539 ARG A 553 1 ? 15 HELX_P HELX_P6 6 THR A 73 ? LYS A 78 ? THR A 554 LYS A 559 5 ? 6 HELX_P HELX_P7 7 ASP A 80 ? LEU A 92 ? ASP A 561 LEU A 573 1 ? 13 HELX_P HELX_P8 8 GLY A 97 ? ILE A 110 ? GLY A 578 ILE A 591 1 ? 14 HELX_P HELX_P9 9 THR A 115 ? CYS A 125 ? THR A 596 CYS A 606 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2N3T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O Q S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 482 482 ASP ASP A . n A 1 2 THR 2 483 483 THR THR A . n A 1 3 LYS 3 484 484 LYS LYS A . n A 1 4 ILE 4 485 485 ILE ILE A . n A 1 5 SER 5 486 486 SER SER A . n A 1 6 SER 6 487 487 SER SER A . n A 1 7 ALA 7 488 488 ALA ALA A . n A 1 8 ALA 8 489 489 ALA ALA A . n A 1 9 ILE 9 490 490 ILE ILE A . n A 1 10 LEU 10 491 491 LEU LEU A . n A 1 11 GLY 11 492 492 GLY GLY A . n A 1 12 LEU 12 493 493 LEU LEU A . n A 1 13 GLY 13 494 494 GLY GLY A . n A 1 14 ILE 14 495 495 ILE ILE A . n A 1 15 ALA 15 496 496 ALA ALA A . n A 1 16 PHE 16 497 497 PHE PHE A . n A 1 17 ALA 17 498 498 ALA ALA A . n A 1 18 GLY 18 499 499 GLY GLY A . n A 1 19 SER 19 500 500 SER SER A . n A 1 20 LYS 20 501 501 LYS LYS A . n A 1 21 ASN 21 502 502 ASN ASN A . n A 1 22 ASP 22 503 503 ASP ASP A . n A 1 23 GLU 23 504 504 GLU GLU A . n A 1 24 VAL 24 505 505 VAL VAL A . n A 1 25 LEU 25 506 506 LEU LEU A . n A 1 26 GLY 26 507 507 GLY GLY A . n A 1 27 LEU 27 508 508 LEU LEU A . n A 1 28 LEU 28 509 509 LEU LEU A . n A 1 29 LEU 29 510 510 LEU LEU A . n A 1 30 PRO 30 511 511 PRO PRO A . n A 1 31 ILE 31 512 512 ILE ILE A . n A 1 32 ALA 32 513 513 ALA ALA A . n A 1 33 ALA 33 514 514 ALA ALA A . n A 1 34 SER 34 515 515 SER SER A . n A 1 35 THR 35 516 516 THR THR A . n A 1 36 ASP 36 517 517 ASP ASP A . n A 1 37 LEU 37 518 518 LEU LEU A . n A 1 38 PRO 38 519 519 PRO PRO A . n A 1 39 ILE 39 520 520 ILE ILE A . n A 1 40 GLU 40 521 521 GLU GLU A . n A 1 41 THR 41 522 522 THR THR A . n A 1 42 ALA 42 523 523 ALA ALA A . n A 1 43 ALA 43 524 524 ALA ALA A . n A 1 44 MET 44 525 525 MET MET A . n A 1 45 ALA 45 526 526 ALA ALA A . n A 1 46 SER 46 527 527 SER SER A . n A 1 47 LEU 47 528 528 LEU LEU A . n A 1 48 ALA 48 529 529 ALA ALA A . n A 1 49 LEU 49 530 530 LEU LEU A . n A 1 50 ALA 50 531 531 ALA ALA A . n A 1 51 HIS 51 532 532 HIS HIS A . n A 1 52 VAL 52 533 533 VAL VAL A . n A 1 53 PHE 53 534 534 PHE PHE A . n A 1 54 VAL 54 535 535 VAL VAL A . n A 1 55 GLY 55 536 536 GLY GLY A . n A 1 56 THR 56 537 537 THR THR A . n A 1 57 CYS 57 538 538 CYS CYS A . n A 1 58 ASN 58 539 539 ASN ASN A . n A 1 59 GLY 59 540 540 GLY GLY A . n A 1 60 ASP 60 541 541 ASP ASP A . n A 1 61 ILE 61 542 542 ILE ILE A . n A 1 62 THR 62 543 543 THR THR A . n A 1 63 THR 63 544 544 THR THR A . n A 1 64 SER 64 545 545 SER SER A . n A 1 65 ILE 65 546 546 ILE ILE A . n A 1 66 MET 66 547 547 MET MET A . n A 1 67 ASP 67 548 548 ASP ASP A . n A 1 68 ASN 68 549 549 ASN ASN A . n A 1 69 PHE 69 550 550 PHE PHE A . n A 1 70 LEU 70 551 551 LEU LEU A . n A 1 71 GLU 71 552 552 GLU GLU A . n A 1 72 ARG 72 553 553 ARG ARG A . n A 1 73 THR 73 554 554 THR THR A . n A 1 74 ALA 74 555 555 ALA ALA A . n A 1 75 ILE 75 556 556 ILE ILE A . n A 1 76 GLU 76 557 557 GLU GLU A . n A 1 77 LEU 77 558 558 LEU LEU A . n A 1 78 LYS 78 559 559 LYS LYS A . n A 1 79 THR 79 560 560 THR THR A . n A 1 80 ASP 80 561 561 ASP ASP A . n A 1 81 TRP 81 562 562 TRP TRP A . n A 1 82 VAL 82 563 563 VAL VAL A . n A 1 83 ARG 83 564 564 ARG ARG A . n A 1 84 PHE 84 565 565 PHE PHE A . n A 1 85 LEU 85 566 566 LEU LEU A . n A 1 86 ALA 86 567 567 ALA ALA A . n A 1 87 LEU 87 568 568 LEU LEU A . n A 1 88 ALA 88 569 569 ALA ALA A . n A 1 89 LEU 89 570 570 LEU LEU A . n A 1 90 GLY 90 571 571 GLY GLY A . n A 1 91 ILE 91 572 572 ILE ILE A . n A 1 92 LEU 92 573 573 LEU LEU A . n A 1 93 TYR 93 574 574 TYR TYR A . n A 1 94 MET 94 575 575 MET MET A . n A 1 95 GLY 95 576 576 GLY GLY A . n A 1 96 GLN 96 577 577 GLN GLN A . n A 1 97 GLY 97 578 578 GLY GLY A . n A 1 98 GLU 98 579 579 GLU GLU A . n A 1 99 GLN 99 580 580 GLN GLN A . n A 1 100 VAL 100 581 581 VAL VAL A . n A 1 101 ASP 101 582 582 ASP ASP A . n A 1 102 ASP 102 583 583 ASP ASP A . n A 1 103 VAL 103 584 584 VAL VAL A . n A 1 104 LEU 104 585 585 LEU LEU A . n A 1 105 GLU 105 586 586 GLU GLU A . n A 1 106 THR 106 587 587 THR THR A . n A 1 107 ILE 107 588 588 ILE ILE A . n A 1 108 SER 108 589 589 SER SER A . n A 1 109 ALA 109 590 590 ALA ALA A . n A 1 110 ILE 110 591 591 ILE ILE A . n A 1 111 GLU 111 592 592 GLU GLU A . n A 1 112 HIS 112 593 593 HIS HIS A . n A 1 113 PRO 113 594 594 PRO PRO A . n A 1 114 MET 114 595 595 MET MET A . n A 1 115 THR 115 596 596 THR THR A . n A 1 116 SER 116 597 597 SER SER A . n A 1 117 ALA 117 598 598 ALA ALA A . n A 1 118 ILE 118 599 599 ILE ILE A . n A 1 119 GLU 119 600 600 GLU GLU A . n A 1 120 VAL 120 601 601 VAL VAL A . n A 1 121 LEU 121 602 602 LEU LEU A . n A 1 122 VAL 122 603 603 VAL VAL A . n A 1 123 GLY 123 604 604 GLY GLY A . n A 1 124 SER 124 605 605 SER SER A . n A 1 125 CYS 125 606 606 CYS CYS A . n A 1 126 ALA 126 607 607 ALA ALA A . n A 1 127 TYR 127 608 608 TYR TYR A . n A 1 128 THR 128 609 609 THR THR A . n A 1 129 GLY 129 610 610 GLY GLY A . n A 1 130 THR 130 611 611 THR THR A . n A 1 131 GLY 131 612 612 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-02-24 2 'Structure model' 1 1 2016-03-23 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 0.7 ? mM '[U-100% 13C; U-100% 15N; U-80% 2H]' 1 HEPES-2 50 ? mM ? 1 'sodium chloride-3' 50 ? mM ? 1 DTT-4 2 ? mM ? 1 EDTA-5 1 ? mM ? 1 'sodium azide-6' 0.1 ? % ? 1 protein-7 0.7 ? mM '[U-100% 15N]' 2 HEPES-8 50 ? mM ? 2 'sodium chloride-9' 50 ? mM ? 2 DTT-10 2 ? mM ? 2 EDTA-11 1 ? mM ? 2 'sodium azide-12' 0.1 ? % ? 2 protein-13 0.7 ? mM '[U-100% 13C]' 3 HEPES-14 50 ? mM ? 3 'sodium chloride-15' 50 ? mM ? 3 DTT-16 2 ? mM ? 3 EDTA-17 1 ? mM ? 3 'sodium azide-18' 0.1 ? % ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2N3T _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1242 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 576 _pdbx_nmr_constraints.NOE_long_range_total_count 247 _pdbx_nmr_constraints.NOE_medium_range_total_count 241 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 178 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 91 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 91 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 491 ? ? -49.52 -70.77 2 1 PHE A 497 ? ? -53.87 -1.84 3 1 SER A 500 ? ? -45.10 -12.82 4 1 LYS A 501 ? ? -74.89 33.94 5 1 ASP A 503 ? ? -46.41 -12.69 6 1 SER A 515 ? ? 44.16 81.20 7 1 ASP A 517 ? ? -168.08 -57.51 8 1 VAL A 535 ? ? -49.96 -13.68 9 1 ARG A 553 ? ? -40.59 105.56 10 1 ILE A 556 ? ? -53.89 -7.70 11 1 LEU A 558 ? ? -53.46 -0.71 12 1 THR A 560 ? ? -165.23 75.52 13 1 ASP A 561 ? ? -173.42 -51.29 14 1 GLN A 577 ? ? 52.17 175.25 15 1 PRO A 594 ? ? -47.68 -160.68 16 1 MET A 595 ? ? -55.83 0.00 17 1 ALA A 607 ? ? -171.22 -148.08 18 1 THR A 609 ? ? -74.24 43.49 19 1 THR A 611 ? ? 46.80 72.43 20 2 THR A 483 ? ? -170.38 120.70 21 2 LYS A 484 ? ? 57.66 105.82 22 2 ILE A 495 ? ? -62.24 3.40 23 2 SER A 500 ? ? -136.87 -65.34 24 2 ASN A 502 ? ? 85.81 0.60 25 2 THR A 516 ? ? -46.79 -12.50 26 2 VAL A 535 ? ? -49.28 -12.08 27 2 ASN A 539 ? ? -165.76 117.13 28 2 ARG A 553 ? ? 43.91 96.47 29 2 ALA A 555 ? ? -48.79 -14.27 30 2 LEU A 558 ? ? -60.69 2.02 31 2 ASP A 561 ? ? -173.98 -42.07 32 2 MET A 575 ? ? 32.04 34.26 33 2 MET A 595 ? ? -97.49 -63.77 34 2 THR A 609 ? ? -156.48 -153.44 35 3 LEU A 491 ? ? -47.87 -79.15 36 3 LEU A 493 ? ? -45.36 -17.52 37 3 ILE A 495 ? ? -48.52 -8.35 38 3 SER A 500 ? ? -137.15 -67.55 39 3 ASN A 502 ? ? 94.14 2.46 40 3 SER A 515 ? ? -115.54 62.79 41 3 THR A 516 ? ? -49.59 -10.67 42 3 ASP A 517 ? ? -39.10 -39.58 43 3 ARG A 553 ? ? 39.74 95.29 44 3 ALA A 555 ? ? -53.32 -7.72 45 3 LEU A 558 ? ? -47.06 -10.82 46 3 LEU A 570 ? ? -43.49 -17.88 47 3 MET A 575 ? ? 43.50 26.95 48 3 GLN A 577 ? ? -172.52 133.00 49 3 GLU A 592 ? ? -59.15 97.91 50 3 ALA A 607 ? ? -163.91 -113.68 51 3 THR A 611 ? ? 55.54 162.51 52 4 THR A 483 ? ? -138.18 -104.74 53 4 LYS A 484 ? ? -79.71 -119.54 54 4 ILE A 485 ? ? 47.94 -87.97 55 4 ILE A 495 ? ? -45.67 -9.93 56 4 PHE A 497 ? ? -51.73 -9.20 57 4 SER A 500 ? ? -136.70 -67.60 58 4 ASN A 502 ? ? 92.86 7.78 59 4 ALA A 514 ? ? -81.95 35.58 60 4 THR A 516 ? ? -49.56 -10.72 61 4 PRO A 519 ? ? -46.14 153.85 62 4 VAL A 535 ? ? -49.48 -14.84 63 4 ARG A 553 ? ? 30.48 89.84 64 4 ALA A 555 ? ? -53.42 -7.67 65 4 ILE A 556 ? ? -53.09 -8.72 66 4 LEU A 558 ? ? -60.42 1.48 67 4 LYS A 559 ? ? -65.61 -137.28 68 4 THR A 560 ? ? -101.77 43.66 69 4 ASP A 561 ? ? 60.99 69.67 70 4 MET A 575 ? ? 61.01 -73.51 71 4 LEU A 602 ? ? -67.39 -70.20 72 4 TYR A 608 ? ? -46.47 104.89 73 4 THR A 611 ? ? -146.35 -154.51 74 5 LEU A 491 ? ? -62.81 -73.09 75 5 ALA A 498 ? ? -48.30 -5.14 76 5 SER A 500 ? ? -136.07 -67.04 77 5 PHE A 534 ? ? -61.68 0.89 78 5 VAL A 535 ? ? -49.53 -17.53 79 5 ASN A 539 ? ? -176.75 118.62 80 5 ARG A 553 ? ? 27.95 81.31 81 5 ALA A 555 ? ? -55.62 -1.92 82 5 ASP A 561 ? ? -140.69 39.90 83 5 PRO A 594 ? ? -75.44 -74.39 84 6 THR A 483 ? ? 56.44 97.01 85 6 PHE A 497 ? ? -50.10 -7.76 86 6 SER A 500 ? ? -46.22 -13.19 87 6 LYS A 501 ? ? -75.21 33.90 88 6 SER A 515 ? ? 38.96 78.40 89 6 ASP A 517 ? ? -161.67 37.02 90 6 VAL A 535 ? ? -49.98 -10.84 91 6 ARG A 553 ? ? 47.95 91.54 92 6 ALA A 555 ? ? -45.27 -15.54 93 6 ILE A 556 ? ? -53.36 -5.49 94 6 THR A 560 ? ? -154.38 89.26 95 6 ASP A 561 ? ? -173.54 -43.70 96 6 MET A 575 ? ? 60.38 -73.30 97 6 GLN A 577 ? ? -74.31 -94.33 98 6 PRO A 594 ? ? -75.19 -74.37 99 6 ALA A 607 ? ? -163.21 -111.27 100 6 TYR A 608 ? ? -57.88 101.19 101 6 THR A 611 ? ? -165.65 -44.94 102 7 PHE A 497 ? ? -57.70 6.35 103 7 ALA A 498 ? ? -41.99 -15.68 104 7 SER A 500 ? ? -37.32 -16.72 105 7 LYS A 501 ? ? -75.91 26.03 106 7 ASP A 503 ? ? -51.11 -5.07 107 7 ASP A 517 ? ? -170.61 44.23 108 7 VAL A 535 ? ? -49.97 -18.64 109 7 ASN A 539 ? ? -172.16 124.96 110 7 ARG A 553 ? ? 30.28 75.55 111 7 ALA A 555 ? ? -42.27 -18.40 112 7 LEU A 558 ? ? -43.05 -16.66 113 7 GLN A 577 ? ? -125.18 -168.24 114 7 GLU A 579 ? ? -47.37 -18.77 115 7 GLU A 592 ? ? -65.28 88.33 116 7 LEU A 602 ? ? -73.14 -70.45 117 7 CYS A 606 ? ? -89.66 48.08 118 7 ALA A 607 ? ? -166.75 -94.18 119 8 LYS A 484 ? ? -160.79 8.42 120 8 ALA A 498 ? ? -49.05 -4.71 121 8 SER A 500 ? ? -136.03 -67.03 122 8 SER A 515 ? ? 41.25 73.74 123 8 ASP A 517 ? ? -158.59 18.55 124 8 VAL A 535 ? ? -49.97 -12.06 125 8 ASN A 539 ? ? 168.81 120.11 126 8 ARG A 553 ? ? -44.61 92.63 127 8 ALA A 555 ? ? -49.78 -8.92 128 8 ILE A 556 ? ? -53.18 -3.92 129 8 LEU A 558 ? ? -62.06 1.72 130 8 LYS A 559 ? ? -73.89 -94.36 131 8 MET A 575 ? ? 54.78 -82.96 132 8 THR A 611 ? ? -151.30 85.03 133 9 ILE A 485 ? ? -56.78 -4.98 134 9 LEU A 491 ? ? -76.73 -71.58 135 9 ALA A 498 ? ? -55.46 -7.80 136 9 SER A 500 ? ? -44.18 -15.61 137 9 LYS A 501 ? ? -77.10 32.55 138 9 ASP A 517 ? ? -173.27 26.72 139 9 VAL A 535 ? ? -49.84 -12.68 140 9 ARG A 553 ? ? 33.59 88.47 141 9 ALA A 555 ? ? -48.69 -10.95 142 9 LEU A 558 ? ? -39.56 -28.16 143 9 MET A 575 ? ? 54.75 -83.38 144 9 PRO A 594 ? ? -43.79 -18.87 145 9 SER A 605 ? ? -135.03 -57.57 146 9 CYS A 606 ? ? -75.00 49.09 147 9 ALA A 607 ? ? -157.48 -129.66 148 9 TYR A 608 ? ? -60.58 86.86 149 9 THR A 609 ? ? -91.33 -105.44 150 10 THR A 483 ? ? -145.05 26.06 151 10 LYS A 484 ? ? -145.09 -81.83 152 10 LEU A 491 ? ? -65.00 -76.50 153 10 PHE A 497 ? ? -55.26 -5.32 154 10 ALA A 498 ? ? -43.12 -19.68 155 10 SER A 500 ? ? -38.87 -18.43 156 10 LYS A 501 ? ? -76.56 25.53 157 10 ALA A 514 ? ? -82.83 34.65 158 10 PHE A 534 ? ? -61.94 0.55 159 10 ARG A 553 ? ? 36.10 93.67 160 10 ILE A 556 ? ? -55.59 -3.30 161 10 LEU A 558 ? ? -48.55 -8.75 162 10 ASP A 561 ? ? 84.62 -64.89 163 10 MET A 575 ? ? 52.82 80.83 164 10 ALA A 607 ? ? -156.00 -153.27 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 553 ? ? 0.133 'SIDE CHAIN' 2 1 ARG A 564 ? ? 0.229 'SIDE CHAIN' 3 2 ARG A 553 ? ? 0.298 'SIDE CHAIN' 4 2 ARG A 564 ? ? 0.190 'SIDE CHAIN' 5 3 ARG A 553 ? ? 0.202 'SIDE CHAIN' 6 3 ARG A 564 ? ? 0.156 'SIDE CHAIN' 7 4 ARG A 553 ? ? 0.209 'SIDE CHAIN' 8 4 ARG A 564 ? ? 0.300 'SIDE CHAIN' 9 5 ARG A 553 ? ? 0.306 'SIDE CHAIN' 10 5 ARG A 564 ? ? 0.245 'SIDE CHAIN' 11 7 ARG A 553 ? ? 0.293 'SIDE CHAIN' 12 7 ARG A 564 ? ? 0.183 'SIDE CHAIN' 13 8 ARG A 553 ? ? 0.144 'SIDE CHAIN' 14 8 ARG A 564 ? ? 0.250 'SIDE CHAIN' 15 9 ARG A 553 ? ? 0.265 'SIDE CHAIN' 16 9 ARG A 564 ? ? 0.116 'SIDE CHAIN' #